-
1
-
-
84942895870
-
Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
-
Sun Z, Harris HMB, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW. 2015. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nat Commun 6:8322. https://doi .org/10.1038/ncomms9322.
-
(2015)
Nat Commun
, vol.6
, pp. 8322
-
-
Sun, Z.1
Harris, H.M.B.2
McCann, A.3
Guo, C.4
Argimón, S.5
Zhang, W.6
Yang, X.7
Jeffery, I.B.8
Cooney, J.C.9
Kagawa, T.F.10
Liu, W.11
Song, Y.12
Salvetti, E.13
Wrobel, A.14
Rasinkangas, P.15
Parkhill, J.16
Rea, M.C.17
O'Sullivan, O.18
Ritari, J.19
Douillard, F.P.20
Paul Ross, R.21
Yang, R.22
Briner, A.E.23
Felis, G.E.24
De Vos, W.M.25
Barrangou, R.26
Klaenhammer, T.R.27
Caufield, P.W.28
Cui, Y.29
Zhang, H.30
O'Toole, P.W.31
more..
-
2
-
-
84885112951
-
Genomic adaptation of the Lactobacillus casei group
-
Toh H, Oshima K, Nakano A, Takahata M, Murakami M, Takaki T, Nishiyama H, Igimi S, Hattori M, Morita H. 2013. Genomic adaptation of the Lactobacillus casei group. PLoS One 8:e75073. https://doi.org/10 .1371/journal.pone.0075073.
-
(2013)
PLoS One
, vol.8
, pp. e75073
-
-
Toh, H.1
Oshima, K.2
Nakano, A.3
Takahata, M.4
Murakami, M.5
Takaki, T.6
Nishiyama, H.7
Igimi, S.8
Hattori, M.9
Morita, H.10
-
3
-
-
84984985713
-
Advances in the genomics and metabolomics of dairy lactobacilli: A review
-
Stefanovic E, Fitzgerald G, McAuliffe O. 2017. Advances in the genomics and metabolomics of dairy lactobacilli: a review. Food Microbiol 61: 33-49. https://doi.org/10.1016/j.fm.2016.08.009.
-
(2017)
Food Microbiol
, vol.61
, pp. 33-49
-
-
Stefanovic, E.1
Fitzgerald, G.2
McAuliffe, O.3
-
4
-
-
84908052904
-
High resolution melting analysis (HRM) as a new tool for the identification of species belonging to the Lactobacillus casei group and comparison with species-specific PCRs and multiplex PCR
-
Iacumin L, Ginaldi F, Manzano M, Anastasi V, Reale A, Zotta T, Rossi F, Coppola R, Comi G. 2015. High resolution melting analysis (HRM) as a new tool for the identification of species belonging to the Lactobacillus casei group and comparison with species-specific PCRs and multiplex PCR. Food Microbiol 46:357-367. https://doi.org/10.1016/j.fm.2014.08 .007.
-
(2015)
Food Microbiol
, vol.46
, pp. 357-367
-
-
Iacumin, L.1
Ginaldi, F.2
Manzano, M.3
Anastasi, V.4
Reale, A.5
Zotta, T.6
Rossi, F.7
Coppola, R.8
Comi, G.9
-
5
-
-
85016954006
-
The development of probiotics for women's health
-
Reid G. 2017. The development of probiotics for women's health. Can J Microbiol 63:269-277. https://doi.org/10.1139/cjm-2016-0733.
-
(2017)
Can J Microbiol
, vol.63
, pp. 269-277
-
-
Reid, G.1
-
6
-
-
84924941855
-
Novel microbiome-based therapeutics for chronic rhinosinusitis
-
Cope EK, Lynch SV. 2015. Novel microbiome-based therapeutics for chronic rhinosinusitis. Curr Allergy Asthma Rep 15:504. https://doi.org/ 10.1007/s11882-014-0504-y.
-
(2015)
Curr Allergy Asthma Rep
, vol.15
, pp. 504
-
-
Cope, E.K.1
Lynch, S.V.2
-
7
-
-
0030032849
-
Reclassification of Lactobacillus casei subsp.casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. Rev., designation of ATCC 334 as the neotype of L. Casei subsp. Casei, and rejection of the name Lactoba-cillus paracasei
-
Dicks LM, Du Plessis EM, Dellaglio F, Lauer E. 1996. Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactoba-cillus paracasei. Int J Syst Bacteriol 46:337-340. https://doi.org/10.1099/ 00207713-46-1-337.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 337-340
-
-
Dicks, L.M.1
Du Plessis, E.M.2
Dellaglio, F.3
Lauer, E.4
-
8
-
-
52449089918
-
The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name "lactobacillus zeae" contravenes rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82
-
Judicial Commission of the International Committee on Systematics of Bacteria
-
Judicial Commission of the International Committee on Systematics of Bacteria. 2008. The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name "Lactobacillus zeae" contravenes rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82. Int J Syst Evol Microbiol 58(Pt 7):1764-1765. https://doi.org/ 10.1099/ijs.0.2008/005330-0.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1764-1765
-
-
-
9
-
-
84880437408
-
Lactobacillus paracasei comparative genomics: Towards species pan-genome definition and exploitation of diversity
-
Smokvina T, Wels M, Polka J, Chervaux C, Brisse S, Boekhorst J, van Hylckama Vlieg JETH, Siezen RJ. 2013. Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One 8:e68731. https://doi.org/10.1371/journal.pone .0068731.
-
(2013)
PLoS One
, vol.8
, pp. e68731
-
-
Smokvina, T.1
Wels, M.2
Polka, J.3
Chervaux, C.4
Brisse, S.5
Boekhorst, J.6
Van Hylckama Vlieg, J.E.T.H.7
Siezen, R.J.8
-
10
-
-
20444431294
-
DNAbased classification and sequence heterogeneities in the 16S rRNA genes of Lactobacillus casei/paracasei and related species
-
Vásquez A, Molin G, Pettersson B, Antonsson M, Ahrné S. 2005. DNAbased classification and sequence heterogeneities in the 16S rRNA genes of Lactobacillus casei/paracasei and related species. Syst Appl Microbiol 28:430-441. https://doi.org/10.1016/j.syapm.2005.02.011.
-
(2005)
Syst Appl Microbiol
, vol.28
, pp. 430-441
-
-
Vásquez, A.1
Molin, G.2
Pettersson, B.3
Antonsson, M.4
Ahrné, S.5
-
11
-
-
85017308228
-
Genetic, enzymatic and metabolite profiling of the Lactobacillus casei group reveals strain biodiversity and potential applications for flavour diversification
-
Stefanovic E, Kilcawley KN, Rea MC, Fitzgerald GF, McAuliffe O. 2017. Genetic, enzymatic and metabolite profiling of the Lactobacillus casei group reveals strain biodiversity and potential applications for flavour diversification. J Appl Microbiol 122:1245-1261. https://doi.org/10.1111/ jam.13420.
-
(2017)
J Appl Microbiol
, vol.122
, pp. 1245-1261
-
-
Stefanovic, E.1
Kilcawley, K.N.2
Rea, M.C.3
Fitzgerald, G.F.4
McAuliffe, O.5
-
12
-
-
0032870959
-
Differentiation of Lactobacillus casei, Lactobacillus paracasei and Lactobacillus rhamnosus by polymerase chain reaction
-
Ward LJ, Timmins MJ. 1999. Differentiation of Lactobacillus casei, Lactobacillus paracasei and Lactobacillus rhamnosus by polymerase chain reaction. Lett Appl Microbiol 29:90-92. https://doi.org/10.1046/j.1365-2672.1999.00586.x.
-
(1999)
Lett Appl Microbiol
, vol.29
, pp. 90-92
-
-
Ward, L.J.1
Timmins, M.J.2
-
13
-
-
0035067535
-
Temporal temperature gradient gel electrophoresis (TTGE) as a tool for identification of Lactobacillus casei, Lactobacillus paracasei, Lactobacillus zeae and Lactobacillus rhamnosus
-
Vásquez A, Ahrné S, Pettersson B, Molin G. 2001. Temporal temperature gradient gel electrophoresis (TTGE) as a tool for identification of Lactobacillus casei, Lactobacillus paracasei, Lactobacillus zeae and Lactobacillus rhamnosus. Lett Appl Microbiol 32:215-219. https://doi.org/10 .1046/j.1472-765X.2001.00901.x.
-
(2001)
Lett Appl Microbiol
, vol.32
, pp. 215-219
-
-
Vásquez, A.1
Ahrné, S.2
Pettersson, B.3
Molin, G.4
-
14
-
-
84891787231
-
Ribosomal Database Project: Data and tools for high throughput rRNA analysis
-
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. 2014. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42:D633-D642. https://doi.org/10.1093/nar/gkt1244.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D633-D642
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
Sun, Y.6
Brown, C.T.7
Porras-Alfaro, A.8
Kuske, C.R.9
Tiedje, J.M.10
-
15
-
-
84947793096
-
Roary: Rapid large-scale prokaryote pan genome analysis
-
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, Fookes M, Falush D, Keane JA, Parkhill J. 2015. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics 31:3691-3693. https://doi .org/10.1093/bioinformatics/btv421.
-
(2015)
Bioinformatics
, vol.31
, pp. 3691-3693
-
-
Page, A.J.1
Cummins, C.A.2
Hunt, M.3
Wong, V.K.4
Reuter, S.5
Holden, M.T.G.6
Fookes, M.7
Falush, D.8
Keane, J.A.9
Parkhill, J.10
-
16
-
-
84906836046
-
Towards a better understanding of Lactobacillus rhamnosus GG-host interactions
-
Segers ME, Lebeer S. 2014. Towards a better understanding of Lactobacillus rhamnosus GG-host interactions. Microb Cell Fact 13:S7. https:// doi.org/10.1186/1475-2859-13-S1-S7.
-
(2014)
Microb Cell Fact
, vol.13
, pp. S7
-
-
Segers, M.E.1
Lebeer, S.2
-
17
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126-19131. https://doi.org/10.1073/pnas.0906412106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
18
-
-
84938582898
-
OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
-
Emms DM, Kelly S. 2015. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol 16:157. https://doi.org/10.1186/s13059-015-0721-2.
-
(2015)
Genome Biol
, vol.16
, pp. 157
-
-
Emms, D.M.1
Kelly, S.2
-
19
-
-
84976905626
-
EGGNOG 4.5: A hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
-
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, Jensen LJ, Von Mering C, Bork P. 2016. EGGNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res 44:D286-D293. https://doi.org/10.1093/nar/gkv1248.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D286-D293
-
-
Huerta-Cepas, J.1
Szklarczyk, D.2
Forslund, K.3
Cook, H.4
Heller, D.5
Walter, M.C.6
Rattei, T.7
Mende, D.R.8
Sunagawa, S.9
Kuhn, M.10
Jensen, L.J.11
Von Mering, C.12
Bork, P.13
-
20
-
-
85009971427
-
Draft genome sequence of the respiration-competent strain Lactobacillus casei N87
-
Zotta T, Ricciardi A, Parente E, Reale A, Ianniello RG, Bassi D. 2016. Draft genome sequence of the respiration-competent strain Lactobacillus casei N87. Genome Announc 4:e00348-16. https://doi.org/10.1128/ genomeA.00348-16.
-
(2016)
Genome Announc
, vol.4
, pp. e00348-e00416
-
-
Zotta, T.1
Ricciardi, A.2
Parente, E.3
Reale, A.4
Ianniello, R.G.5
Bassi, D.6
-
21
-
-
84994030189
-
Investigation of factors affecting aerobic and respiratory growth in the oxygen-tolerant strain Lactobacillus casei N87
-
Ianniello RG, Zotta T, Matera A, Genovese F, Parente E, Ricciardi A. 2016. Investigation of factors affecting aerobic and respiratory growth in the oxygen-tolerant strain Lactobacillus casei N87. PLoS One 11:e0164065. https://doi.org/10.1371/journal.pone.0164065.
-
(2016)
PLoS One
, vol.11
, pp. e0164065
-
-
Ianniello, R.G.1
Zotta, T.2
Matera, A.3
Genovese, F.4
Parente, E.5
Ricciardi, A.6
-
22
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR. 2011. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39:W29-W37. https:// doi.org/10.1093/nar/gkr367.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
23
-
-
84903384945
-
Assessment of aerobic and respiratory growth in the Lactobacillus casei group
-
Zotta T, Ricciardi A, Ianniello RG, Parente E, Reale A, Rossi F, Iacumin L, Comi G, Coppola R. 2014. Assessment of aerobic and respiratory growth in the Lactobacillus casei group. PLoS One 9:e99189. https://doi.org/10 .1371/journal.pone.0099189.
-
(2014)
PLoS One
, vol.9
, pp. e99189
-
-
Zotta, T.1
Ricciardi, A.2
Ianniello, R.G.3
Parente, E.4
Reale, A.5
Rossi, F.6
Iacumin, L.7
Comi, G.8
Coppola, R.9
-
24
-
-
84881559071
-
Cell surfaceassociated compounds of probiotic lactobacilli sustain the strainspecificity dogma
-
Bron PA, Tomita S, Mercenier A, Kleerebezem M. 2013. Cell surfaceassociated compounds of probiotic lactobacilli sustain the strainspecificity dogma. Curr Opin Microbiol 16:262-269. https://doi.org/10 .1016/j.mib.2013.06.001.
-
(2013)
Curr Opin Microbiol
, vol.16
, pp. 262-269
-
-
Bron, P.A.1
Tomita, S.2
Mercenier, A.3
Kleerebezem, M.4
-
25
-
-
76949107790
-
Host interactions of probiotic bacterial surface molecules: Comparison with commensals and pathogens
-
Lebeer S, Vanderleyden J, De Keersmaecker SCJ. 2010. Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens. Nat Rev Microbiol 8:171-184. https://doi.org/10.1038/ nrmicro2297.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 171-184
-
-
Lebeer, S.1
Vanderleyden, J.2
De Keersmaecker, S.C.J.3
-
26
-
-
84902244886
-
Selective transport by SecA2: An expanding family of customized motor proteins
-
Bensing BA, Seepersaud R, Yen YT, Sullam PM. 2014. Selective transport by SecA2: an expanding family of customized motor proteins. Biochim Biophys Acta 1843:1674-1686. https://doi.org/10.1016/j.bbamcr.2013.10 .019.
-
(2014)
Biochim Biophys Acta
, vol.1843
, pp. 1674-1686
-
-
Bensing, B.A.1
Seepersaud, R.2
Yen, Y.T.3
Sullam, P.M.4
-
28
-
-
84884610218
-
Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG
-
Douillard FP, Ribbera A, Kant R, Pietilä TE, Järvinen HM, Messing M, Randazzo CL, Paulin L, Laine P, Ritari J, Caggia C, Lähteinen T, Brouns SJJ, Satokari R, von Ossowski I, Reunanen J, Palva A, de Vos WM. 2013. Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG. PLoS Genet 9:e1003683. https://doi.org/10.1371/journal.pgen.1003683.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003683
-
-
Douillard, F.P.1
Ribbera, A.2
Kant, R.3
Pietilä, T.E.4
Järvinen, H.M.5
Messing, M.6
Randazzo, C.L.7
Paulin, L.8
Laine, P.9
Ritari, J.10
Caggia, C.11
Lähteinen, T.12
Brouns, S.J.J.13
Satokari, R.14
Von Ossowski, I.15
Reunanen, J.16
Palva, A.17
De Vos, W.M.18
-
29
-
-
33747342672
-
Production of a heterologous nonheme catalase by Lactobacillus casei: An efficient tool for removal of H2O2 and protection of Lactobacillus bulgaricus from oxidative stress in milk
-
Rochat T, Gratadoux JJ, Gruss A, Corthier G, Maguin E, Langella P, Van De Guchte M. 2006. Production of a heterologous nonheme catalase by Lactobacillus casei: an efficient tool for removal of H2O2 and protection of Lactobacillus bulgaricus from oxidative stress in milk. Appl Environ Microbiol 72:5143-5149. https://doi.org/10.1128/AEM.00482-06.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5143-5149
-
-
Rochat, T.1
Gratadoux, J.J.2
Gruss, A.3
Corthier, G.4
Maguin, E.5
Langella, P.6
Van De Guchte, M.7
-
30
-
-
78149270683
-
Intragastric administration of a superoxide dismutase-producing recombinant Lactobacillus casei BL23 strain attenuates DSS colitis in mice
-
Watterlot L, Rochat T, Sokol H, Cherbuy C, Bouloufa I, Lefèvre F, Gratadoux JJ, Honvo-Hueto E, Chilmonczyk S, Blugeon S, Corthier G, Langella P, Bermúdez-Humarán LG. 2010. Intragastric administration of a superoxide dismutase-producing recombinant Lactobacillus casei BL23 strain attenuates DSS colitis in mice. Int J Food Microbiol 144:35-41. https:// doi.org/10.1016/j.ijfoodmicro.2010.03.037.
-
(2010)
Int J Food Microbiol
, vol.144
, pp. 35-41
-
-
Watterlot, L.1
Rochat, T.2
Sokol, H.3
Cherbuy, C.4
Bouloufa, I.5
Lefèvre, F.6
Gratadoux, J.J.7
Honvo-Hueto, E.8
Chilmonczyk, S.9
Blugeon, S.10
Corthier, G.11
Langella, P.12
Bermúdez-Humarán, L.G.13
-
31
-
-
80051684613
-
Coexpression of bile salt hydrolase gene and catalase gene remarkably improves oxidative stress and bile salt resistance in Lactobacillus casei
-
Wang G, Yin S, An H, Chen S, Hao Y. 2011. Coexpression of bile salt hydrolase gene and catalase gene remarkably improves oxidative stress and bile salt resistance in Lactobacillus casei. J Ind Microbiol Biotechnol 38:985-990. https://doi.org/10.1007/s10295-010-0871-x.
-
(2011)
J Ind Microbiol Biotechnol
, vol.38
, pp. 985-990
-
-
Wang, G.1
Yin, S.2
An, H.3
Chen, S.4
Hao, Y.5
-
32
-
-
84963676464
-
The impact of heterologous catalase expression and superoxide dismutase overexpression on enhancing the oxidative resistance in Lactobacillus casei
-
Lin J, Zou Y, Cao K, Ma C, Chen Z. 2016. The impact of heterologous catalase expression and superoxide dismutase overexpression on enhancing the oxidative resistance in Lactobacillus casei. J Ind Microbiol Biotechnol 43:703-711. https://doi.org/10.1007/s10295-016-1752-8.
-
(2016)
J Ind Microbiol Biotechnol
, vol.43
, pp. 703-711
-
-
Lin, J.1
Zou, Y.2
Cao, K.3
Ma, C.4
Chen, Z.5
-
33
-
-
28644443758
-
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K
-
Chaillou S, Champomier-Vergès MC, Cornet M, Crutz-Le Coq AM, Dudez AM, Martin V, Beaufils S, Darbon-Rongère E, Bossy R, Loux V, Zagorec M. 2005. The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat Biotechnol 23:1527-1533. https:// doi.org/10.1038/nbt1160.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1527-1533
-
-
Chaillou, S.1
Champomier-Vergès, M.C.2
Cornet, M.3
Crutz-Le Coq, A.M.4
Dudez, A.M.5
Martin, V.6
Beaufils, S.7
Darbon-Rongère, E.8
Bossy, R.9
Loux, V.10
Zagorec, M.11
-
34
-
-
84863717940
-
Cloning and heterologous expression of the manganese superoxide dismutase gene from Lactobacillus casei Lc18
-
Liu Q, Hang X, Liu X, Tan J, Li D, Yang H. 2012. Cloning and heterologous expression of the manganese superoxide dismutase gene from Lactobacillus casei Lc18. Ann Microbiol 62:129-137. https://doi.org/10.1007/ s13213-011-0237-2.
-
(2012)
Ann Microbiol
, vol.62
, pp. 129-137
-
-
Liu, Q.1
Hang, X.2
Liu, X.3
Tan, J.4
Li, D.5
Yang, H.6
-
35
-
-
84855214884
-
Effect of respiration and manganese on oxidative stress resistance of Lactobacillus plantarum WCFS1
-
Watanabe M, van der Veen S, Nakajima H, Abee T. 2012. Effect of respiration and manganese on oxidative stress resistance of Lactobacillus plantarum WCFS1. Microbiology 158:293-300. https://doi.org/10 .1099/mic.0.051250-0.
-
(2012)
Microbiology
, vol.158
, pp. 293-300
-
-
Watanabe, M.1
Van Der Veen, S.2
Nakajima, H.3
Abee, T.4
-
36
-
-
77954954290
-
High-level expression of heme-dependent catalase gene katA from Lactobacillus sakei protects Lactobacillus rhamnosus from oxidative stress
-
An H, Zhou H, Huang Y, Wang G, Luan C, Mou J, Luo Y, Hao Y. 2010. High-level expression of heme-dependent catalase gene katA from Lactobacillus sakei protects Lactobacillus rhamnosus from oxidative stress. Mol Biotechnol 45:155-160. https://doi.org/10.1007/s12033-010-9254-9.
-
(2010)
Mol Biotechnol
, vol.45
, pp. 155-160
-
-
An, H.1
Zhou, H.2
Huang, Y.3
Wang, G.4
Luan, C.5
Mou, J.6
Luo, Y.7
Hao, Y.8
-
37
-
-
0029860739
-
Molecular cloning of manganese catalase from Lactobacillus plantarum
-
Igarashi T, Kono Y, Tanaka K. 1996. Molecular cloning of manganese catalase from Lactobacillus plantarum. J Biol Chem 271:29521-29524. https://doi.org/10.1074/jbc.271.47.29521.
-
(1996)
J Biol Chem
, vol.271
, pp. 29521-29524
-
-
Igarashi, T.1
Kono, Y.2
Tanaka, K.3
-
38
-
-
0037452621
-
Complete genome sequence of Lactobacillus plantarum WCFS1
-
Kleerebezem M, Boekhorst J, van Kranenburg R, Molenaar D, Kuipers OP, Leer R, Tarchini R, Peters SA, Sandbrink HM, Fiers MWEJ, Stiekema W, Lankhorst RMK, Bron PA, Hoffer SM, Groot MNN, Kerkhoven R, de Vries M, Ursing B, de Vos WM, Siezen RJ. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A 100: 1990-1995. https://doi.org/10.1073/pnas.0337704100.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 1990-1995
-
-
Kleerebezem, M.1
Boekhorst, J.2
Van Kranenburg, R.3
Molenaar, D.4
Kuipers, O.P.5
Leer, R.6
Tarchini, R.7
Peters, S.A.8
Sandbrink, H.M.9
Fiers, M.W.E.J.10
Stiekema, W.11
Lankhorst, R.M.K.12
Bron, P.A.13
Hoffer, S.M.14
Groot, M.N.N.15
Kerkhoven, R.16
De Vries, M.17
Ursing, B.18
De Vos, W.M.19
Siezen, R.J.20
more..
-
39
-
-
66249130962
-
Lactobacillus plantarum WCFS1 electron transport chains
-
Brooijmans RJW, De Vos WM, Hugenholtz J. 2009. Lactobacillus plantarum WCFS1 electron transport chains. Appl Environ Microbiol 75: 3580-3585. https://doi.org/10.1128/AEM.00147-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3580-3585
-
-
Brooijmans, R.J.W.1
De Vos, W.M.2
Hugenholtz, J.3
-
40
-
-
85013288153
-
Aerobic metabolism in the genus Lactobacillus: Impact on stress response and potential applications in the food industry
-
Zotta T, Parente E, Ricciardi A. 2017. Aerobic metabolism in the genus Lactobacillus: impact on stress response and potential applications in the food industry. J Appl Microbiol 122:857-869. https://doi.org/10 .1111/jam.13399.
-
(2017)
J Appl Microbiol
, vol.122
, pp. 857-869
-
-
Zotta, T.1
Parente, E.2
Ricciardi, A.3
-
41
-
-
84922287111
-
Aeration and supplementation with heme and menaquinone affect survival to stresses and antioxidant capability of Lactobacillus casei strains
-
Ianniello RG, Ricciardi A, Parente E, Tramutola A, Reale A, Zotta T. 2015. Aeration and supplementation with heme and menaquinone affect survival to stresses and antioxidant capability of Lactobacillus casei strains. LWT Food Sci Technol 60:817-824. https://doi.org/10.1016/j.lwt .2014.10.020.
-
(2015)
LWT Food Sci Technol
, vol.60
, pp. 817-824
-
-
Ianniello, R.G.1
Ricciardi, A.2
Parente, E.3
Tramutola, A.4
Reale, A.5
Zotta, T.6
-
42
-
-
84892690253
-
Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont
-
Frese SA, MacKenzie DA, Peterson DA, Schmaltz R, Fangman T, Zhou Y, Zhang C, Benson AK, Cody LA, Mulholland F, Juge N, Walter J. 2013. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. PLoS Genet 9:e1004057. https://doi.org/10.1371/ journal.pgen.1004057.
-
(2013)
PLoS Genet
, vol.9
, pp. e1004057
-
-
Frese, S.A.1
MacKenzie, D.A.2
Peterson, D.A.3
Schmaltz, R.4
Fangman, T.5
Zhou, Y.6
Zhang, C.7
Benson, A.K.8
Cody, L.A.9
Mulholland, F.10
Juge, N.11
Walter, J.12
-
43
-
-
79954596315
-
Phase variation: How to create and coordinate population diversity
-
van der Woude MW. 2011. Phase variation: how to create and coordinate population diversity. Curr Opin Microbiol 14:205-211. https://doi.org/10 .1016/j.mib.2011.01.002.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 205-211
-
-
Van Der Woude, M.W.1
-
44
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455-477. https://doi.org/10.1089/cmb.2012.0021.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
45
-
-
74049108922
-
BLAST: Architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST: architecture and applications. BMC Bioinformatics 10:421. https://doi.org/10.1186/1471-2105-10-421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
46
-
-
84876266928
-
QUAST: Quality assessment tool for genome assemblies
-
Gurevich A, Saveliev V, Vyahhi N, Tesler G. 2013. QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072-1075. https:// doi.org/10.1093/bioinformatics/btt086.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
47
-
-
0034201441
-
EMBOSS: The European Molecular biology open software suite
-
Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular biology open software suite. Trends Genet 16:276-277. https://doi.org/ 10.1016/S0168-9525(00)02024-2.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
49
-
-
84901417347
-
Prokka: Rapid prokaryotic genome annotation
-
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068-2069. https://doi.org/10.1093/bioinformatics/btu153.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
50
-
-
84952836694
-
Genomics and taxonomy in diagnostics for food security: Soft-rotting enterobacterial plant pathogens
-
Pritchard L, Glover RH, Humphris S, Elphinstone JG, Toth IK. 2016. Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Anal Methods 8:12-24. https://doi.org/ 10.1039/C5AY02550H.
-
(2016)
Anal Methods
, vol.8
, pp. 12-24
-
-
Pritchard, L.1
Glover, R.H.2
Humphris, S.3
Elphinstone, J.G.4
Toth, I.K.5
-
51
-
-
84988637625
-
GGTREE: An R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
-
Yu G, Smith DK, Zhu H, Guan Y, Lam TTY. 2017. GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods Ecol Evol 8:28-36. https://doi .org/10.1111/2041-210X.12628.
-
(2017)
Methods Ecol Evol
, vol.8
, pp. 28-36
-
-
Yu, G.1
Smith, D.K.2
Zhu, H.3
Guan, Y.4
Lam, T.T.Y.5
-
52
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313. https://doi.org/10.1093/bioinformatics/btu033.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
53
-
-
70349255569
-
-
R Foundation, Vienna, Austria
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H. 2016. Vegan: community ecology package. R Foundation, Vienna, Austria.
-
(2016)
Vegan: Community Ecology Package
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
54
-
-
84864442502
-
DbCAN: A web resource for automated carbohydrate-active enzyme annotation
-
Yin Y, Mao X, Yang J, Chen X, Mao F, Xu Y. 2012. dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res 40:W445-W451. https://doi.org/10.1093/nar/gks479.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W445-W451
-
-
Yin, Y.1
Mao, X.2
Yang, J.3
Chen, X.4
Mao, F.5
Xu, Y.6
|