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Volumn 8, Issue 10, 2013, Pages

Genomic Adaptation of the Lactobacillus casei Group

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARBOHYDRATE; EXTRACELLULAR ADHESION PROTEIN; UNCLASSIFIED DRUG;

EID: 84885112951     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0075073     Document Type: Article
Times cited : (80)

References (38)
  • 2
    • 0030032849 scopus 로고    scopus 로고
    • Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei
    • Dicks LM, Du Plessis EM, Dellaglio F, Lauer E, (1996) Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. Int J Syst Bacteriol 46: 337-340.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 337-340
    • Dicks, L.M.1    Du Plessis, E.M.2    Dellaglio, F.3    Lauer, E.4
  • 3
    • 0035197715 scopus 로고    scopus 로고
    • Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group
    • Felis GE, Dellaglio F, Mizzi L, Torriani S, (2001) Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group. Int J Syst Evol Microbiol 51: 2113-2117.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 2113-2117
    • Felis, G.E.1    Dellaglio, F.2    Mizzi, L.3    Torriani, S.4
  • 4
    • 0036153759 scopus 로고    scopus 로고
    • The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion
    • Dellaglio F, Felis GE, Torriani S, (2002) The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion. Int J Syst Evol Microbiol 52: 285-287.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 285-287
    • Dellaglio, F.1    Felis, G.E.2    Torriani, S.3
  • 5
    • 0037217203 scopus 로고    scopus 로고
    • Significant differences between Lactobacillus casei subsp. casei ATCC 393T and a commonly used plasmid-cured derivative revealed by a polyphasic study
    • Acedo-Félix E, Pérez-Martínez G, (2003) Significant differences between Lactobacillus casei subsp. casei ATCC 393T and a commonly used plasmid-cured derivative revealed by a polyphasic study. Int J Syst Evol Microbiol 53: 67-75.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 67-75
    • Acedo-Félix, E.1    Pérez-Martínez, G.2
  • 6
    • 35448962013 scopus 로고    scopus 로고
    • Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
    • Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, et al. (2007) Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination. Appl Environ Microbiol 73: 6601-6611.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6601-6611
    • Diancourt, L.1    Passet, V.2    Chervaux, C.3    Garault, P.4    Smokvina, T.5
  • 7
    • 52449089918 scopus 로고    scopus 로고
    • The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82
    • Judicial Commission of the International Committee on Systematics of Bacteria
    • Judicial Commission of the International Committee on Systematics of Bacteria (2008) The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82. Int J Syst Evol Microbiol 58: 1764-1765.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1764-1765
  • 9
    • 70350134948 scopus 로고    scopus 로고
    • Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein
    • Kankainen M, Paulin L, Tynkkynen S, von Ossowski I, Reunanen J, et al. (2009) Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. Proc Natl Acad Sci U S A 106: 17193-17198.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 17193-17198
    • Kankainen, M.1    Paulin, L.2    Tynkkynen, S.3    von Ossowski, I.4    Reunanen, J.5
  • 10
    • 77952081524 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic Lactobacillus casei strain BL23
    • Mazé A, Boël G, Zúñiga M, Bourand A, Loux V, et al. (2010) Complete genome sequence of the probiotic Lactobacillus casei strain BL23. J Bacteriol 192: 2647-2648.
    • (2010) J Bacteriol , vol.192 , pp. 2647-2648
    • Mazé, A.1    Boël, G.2    Zúñiga, M.3    Bourand, A.4    Loux, V.5
  • 11
    • 77957341206 scopus 로고    scopus 로고
    • Complete genome sequence of Lactobacillus casei Zhang, a new probiotic strain isolated from traditional homemade koumiss in Inner Mongolia, China
    • Zhang W, Yu D, Sun Z, Wu R, Chen X, et al. (2010) Complete genome sequence of Lactobacillus casei Zhang, a new probiotic strain isolated from traditional homemade koumiss in Inner Mongolia, China. J Bacteriol 192: 5268-5269.
    • (2010) J Bacteriol , vol.192 , pp. 5268-5269
    • Zhang, W.1    Yu, D.2    Sun, Z.3    Wu, R.4    Chen, X.5
  • 12
    • 79958071011 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic strain Lactobacillus casei BD-II
    • Ai L, Chen C, Zhou F, Wang L, Zhang H, et al. (2011) Complete genome sequence of the probiotic strain Lactobacillus casei BD-II. J Bacteriol 193: 3160-3161.
    • (2011) J Bacteriol , vol.193 , pp. 3160-3161
    • Ai, L.1    Chen, C.2    Zhou, F.3    Wang, L.4    Zhang, H.5
  • 13
    • 79959363282 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W
    • Chen C, Ai L, Zhou F, Wang L, Zhang H, et al. (2011) Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W. J Bacteriol 193: 3419-3420.
    • (2011) J Bacteriol , vol.193 , pp. 3419-3420
    • Chen, C.1    Ai, L.2    Zhou, F.3    Wang, L.4    Zhang, H.5
  • 14
    • 84855914384 scopus 로고    scopus 로고
    • Genome sequence of Lactobacillus rhamnosus ATCC 8530
    • Pittet V, Ewen E, Bushell BR, Ziola B, (2012) Genome sequence of Lactobacillus rhamnosus ATCC 8530. J Bacteriol 194: 726.
    • (2012) J Bacteriol , vol.194 , pp. 726
    • Pittet, V.1    Ewen, E.2    Bushell, B.R.3    Ziola, B.4
  • 15
    • 72449142819 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103
    • Morita H, Toh H, Oshima K, Murakami M, Taylor TD, et al. (2009) Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103. J Bacteriol 191: 7630-7631.
    • (2009) J Bacteriol , vol.191 , pp. 7630-7631
    • Morita, H.1    Toh, H.2    Oshima, K.3    Murakami, M.4    Taylor, T.D.5
  • 17
    • 73549114870 scopus 로고    scopus 로고
    • Use of colony-based bacterial strain typing for tracking the fate of Lactobacillus strains during human consumption
    • Mahenthiralingam E, Marchbank A, Drevinek P, Garaiova I, Plummer S, (2009) Use of colony-based bacterial strain typing for tracking the fate of Lactobacillus strains during human consumption. BMC Microbiol 9: 251.
    • (2009) BMC Microbiol , vol.9 , pp. 251
    • Mahenthiralingam, E.1    Marchbank, A.2    Drevinek, P.3    Garaiova, I.4    Plummer, S.5
  • 18
    • 38949166977 scopus 로고    scopus 로고
    • An improved DNA isolation method for metagenomic analysis of the microbial flora of the human intestine
    • Morita H, Kuwahara T, Ohshima K, Sasamoto H, Itoh K, et al. (2007) An improved DNA isolation method for metagenomic analysis of the microbial flora of the human intestine. Microbes Environ 22: 214-222.
    • (2007) Microbes Environ , vol.22 , pp. 214-222
    • Morita, H.1    Kuwahara, T.2    Ohshima, K.3    Sasamoto, H.4    Itoh, K.5
  • 20
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 21
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G, Nielsen H, (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786.
    • (2011) Nat Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 22
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I, Vergnaud G, Pourcel C, (2007) CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 35: W52-57.
    • (2007) Nucleic Acids Res , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 23
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • Rasko DA, Myers GS, Ravel J, (2005) Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics 6: 2.
    • (2005) BMC Bioinformatics , vol.6 , pp. 2
    • Rasko, D.A.1    Myers, G.S.2    Ravel, J.3
  • 24
    • 34547892713 scopus 로고    scopus 로고
    • Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity
    • Cai H, Rodríguez BT, Zhang W, Broadbent JR, Steele JL, (2007) Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity. Microbiology 153: 2655-2665.
    • (2007) Microbiology , vol.153 , pp. 2655-2665
    • Cai, H.1    Rodríguez, B.T.2    Zhang, W.3    Broadbent, J.R.4    Steele, J.L.5
  • 25
    • 84867018919 scopus 로고    scopus 로고
    • Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
    • Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, et al. (2012) Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 13: 533.
    • (2012) BMC Genomics , vol.13 , pp. 533
    • Broadbent, J.R.1    Neeno-Eckwall, E.C.2    Stahl, B.3    Tandee, K.4    Cai, H.5
  • 27
    • 73749085106 scopus 로고    scopus 로고
    • Genome sequence and comparative genome analysis of Lactobacillus casei: Insights into their niche-associated evolution
    • Cai H, Thompson R, Budinich MF, Broadbent JR, Steele JL, (2009) Genome sequence and comparative genome analysis of Lactobacillus casei: Insights into their niche-associated evolution. Genome Biol Evol 1: 239-257.
    • (2009) Genome Biol Evol , vol.1 , pp. 239-257
    • Cai, H.1    Thompson, R.2    Budinich, M.F.3    Broadbent, J.R.4    Steele, J.L.5
  • 28
    • 33846075967 scopus 로고    scopus 로고
    • Evolutionary genomics of lactic acid bacteria
    • Makarova KS, Koonin EV, (2007) Evolutionary genomics of lactic acid bacteria. J Bacteriol 189: 1199-1208.
    • (2007) J Bacteriol , vol.189 , pp. 1199-1208
    • Makarova, K.S.1    Koonin, E.V.2
  • 29
    • 0037195083 scopus 로고    scopus 로고
    • The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
    • Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, et al. (2002) The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci U S A 99: 14422-14427.
    • (2002) Proc. Natl. Acad. Sci U S A , vol.99 , pp. 14422-14427
    • Schell, M.A.1    Karmirantzou, M.2    Snel, B.3    Vilanova, D.4    Berger, B.5
  • 31
    • 84874795543 scopus 로고    scopus 로고
    • Comparative genomic and functional analysis of Lactobacillus casei and Lactobacillus rhamnosus strains marketed as probiotics
    • Douillard FP, Ribbera A, Järvinen HM, Kant R, Pietilä TE, et al. (2013) Comparative genomic and functional analysis of Lactobacillus casei and Lactobacillus rhamnosus strains marketed as probiotics. Appl Environ Microbiol 79: 1923-1933.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 1923-1933
    • Douillard, F.P.1    Ribbera, A.2    Järvinen, H.M.3    Kant, R.4    Pietilä, T.E.5
  • 32
    • 0033827598 scopus 로고    scopus 로고
    • Quantitative approach in the study of adhesion of lactic acid bacteria to intestinal cells and their competition with enterobacteria
    • Lee YK, Lim CY, Teng WL, Ouwehand AC, Tuomola EM, (2000) Quantitative approach in the study of adhesion of lactic acid bacteria to intestinal cells and their competition with enterobacteria. Appl Environ Microbiol 66: 3692-3697.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3692-3697
    • Lee, Y.K.1    Lim, C.Y.2    Teng, W.L.3    Ouwehand, A.C.4    Tuomola, E.M.5
  • 34
    • 33846926952 scopus 로고    scopus 로고
    • C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria
    • Brinster S, Furlan S, Serror P, (2007) C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria. J Bacteriol 189: 1244-1253.
    • (2007) J Bacteriol , vol.189 , pp. 1244-1253
    • Brinster, S.1    Furlan, S.2    Serror, P.3
  • 35
    • 33747012649 scopus 로고    scopus 로고
    • Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria
    • Siezen R, Boekhorst J, Muscariello L, Molenaar D, Renckens B, et al. (2006) Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics 7: 126.
    • (2006) BMC Genomics , vol.7 , pp. 126
    • Siezen, R.1    Boekhorst, J.2    Muscariello, L.3    Molenaar, D.4    Renckens, B.5
  • 36
    • 0035919670 scopus 로고    scopus 로고
    • Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
    • Tettelin H, Nelson KE, Paulsen IT, Eisen JA, Read TD, et al. (2001) Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293: 498-506.
    • (2001) Science , vol.293 , pp. 498-506
    • Tettelin, H.1    Nelson, K.E.2    Paulsen, I.T.3    Eisen, J.A.4    Read, T.D.5
  • 37
    • 10744220291 scopus 로고    scopus 로고
    • The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
    • Pridmore RD, Berger B, Desiere F, Vilanova D, Barretto C, et al. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc Natl Acad Sci U S A 101: 2512-2517.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 2512-2517
    • Pridmore, R.D.1    Berger, B.2    Desiere, F.3    Vilanova, D.4    Barretto, C.5
  • 38
    • 77954633575 scopus 로고    scopus 로고
    • Characterization of MabA, a modulator of Lactobacillus rhamnosus GG adhesion and biofilm formation
    • Vélez MP, Petrova MI, Lebeer S, Verhoeven TL, Claes I, et al. (2010) Characterization of MabA, a modulator of Lactobacillus rhamnosus GG adhesion and biofilm formation. FEMS Immunol Med Microbiol 59: 386-398.
    • (2010) FEMS Immunol Med Microbiol , vol.59 , pp. 386-398
    • Vélez, M.P.1    Petrova, M.I.2    Lebeer, S.3    Verhoeven, T.L.4    Claes, I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.