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Volumn 46, Issue 9, 2017, Pages 800-815

Review article: the human intestinal virome in health and disease

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; RNA 16S; ANTIINFECTIVE AGENT;

EID: 85030857588     PISSN: 02692813     EISSN: 13652036     Source Type: Journal    
DOI: 10.1111/apt.14280     Document Type: Review
Times cited : (177)

References (103)
  • 1
    • 20344382957 scopus 로고    scopus 로고
    • Here a virus, there a virus, everywhere the same virus?
    • Breitbart M, Rohwer F. Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 2005;13:278-284.
    • (2005) Trends Microbiol , vol.13 , pp. 278-284
    • Breitbart, M.1    Rohwer, F.2
  • 3
    • 84903616167 scopus 로고    scopus 로고
    • Exploiting gut bacteriophages for human health
    • Dalmasso M, Hill C, Ross RP. Exploiting gut bacteriophages for human health. Trends Microbiol. 2014;22:399-405.
    • (2014) Trends Microbiol , vol.22 , pp. 399-405
    • Dalmasso, M.1    Hill, C.2    Ross, R.P.3
  • 4
    • 84958966469 scopus 로고    scopus 로고
    • Characterization of a bacteriophage-derived murein peptidase for elimination of antibiotic-resistant Staphylococcus aureus
    • Keary R, Sanz-Gaitero M, van Raaij MJ, et al. Characterization of a bacteriophage-derived murein peptidase for elimination of antibiotic-resistant Staphylococcus aureus. Curr Protein Pept Sci. 2016;17:183-190.
    • (2016) Curr Protein Pept Sci , vol.17 , pp. 183-190
    • Keary, R.1    Sanz-Gaitero, M.2    van Raaij, M.J.3
  • 5
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer MG. Ecology of prokaryotic viruses. FEMS Microbiol Rev. 2004;28:127-181.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 6
    • 77957945540 scopus 로고    scopus 로고
    • Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell
    • Rakhuba DV, Kolomiets EI, Dey ES, Novik GI. Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell. Pol J Microbiol. 2010;59:145-155.
    • (2010) Pol J Microbiol , vol.59 , pp. 145-155
    • Rakhuba, D.V.1    Kolomiets, E.I.2    Dey, E.S.3    Novik, G.I.4
  • 7
    • 84865094411 scopus 로고    scopus 로고
    • Comparative (meta)genomic analysis and ecological profiling of human gut-specific bacteriophage φB124-14
    • Ogilvie LA, Caplin J, Dedi C, et al. Comparative (meta)genomic analysis and ecological profiling of human gut-specific bacteriophage φB124-14. PLoS ONE. 2012;7:e35053.
    • (2012) PLoS ONE , vol.7
    • Ogilvie, L.A.1    Caplin, J.2    Dedi, C.3
  • 8
    • 84865169354 scopus 로고    scopus 로고
    • CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
    • Stern A, Mick E, Tirosh I, Sagy O, Sorek R. CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. Genome Res. 2012;22:1985-1994.
    • (2012) Genome Res , vol.22 , pp. 1985-1994
    • Stern, A.1    Mick, E.2    Tirosh, I.3    Sagy, O.4    Sorek, R.5
  • 10
    • 84918533502 scopus 로고    scopus 로고
    • Characterization of virus-like particles associated with the human faecal and caecal microbiota
    • Hoyles L, McCartney AL, Neve H, et al. Characterization of virus-like particles associated with the human faecal and caecal microbiota. Res Microbiol. 2014;165:803-812.
    • (2014) Res Microbiol , vol.165 , pp. 803-812
    • Hoyles, L.1    McCartney, A.L.2    Neve, H.3
  • 11
    • 83055177100 scopus 로고    scopus 로고
    • Diversity and abundance of single-stranded DNA viruses in human feces
    • Kim M-S, Park E-J, Roh SW, Bae J-W. Diversity and abundance of single-stranded DNA viruses in human feces. Appl Environ Microbiol. 2011;77:8062-8070.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 8062-8070
    • Kim, M.-S.1    Park, E.-J.2    Roh, S.W.3    Bae, J.-W.4
  • 12
    • 84975079122 scopus 로고    scopus 로고
    • Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
    • Castro-Mejía JL, Muhammed MK, Kot W, et al. Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut. Microbiome. 2015;3:64.
    • (2015) Microbiome , vol.3 , pp. 64
    • Castro-Mejía, J.L.1    Muhammed, M.K.2    Kot, W.3
  • 13
    • 84946601295 scopus 로고    scopus 로고
    • Virome capture sequencing enables sensitive viral diagnosis and comprehensive virome analysis
    • Briese T, Kapoor A, Mishra N, et al. Virome capture sequencing enables sensitive viral diagnosis and comprehensive virome analysis. mBio. 2015;6:e01491-01415.
    • (2015) mBio , vol.6 , pp. e01415-e01491
    • Briese, T.1    Kapoor, A.2    Mishra, N.3
  • 14
    • 10944226351 scopus 로고    scopus 로고
    • Metagenomics: genomic analysis of microbial communities
    • Riesenfeld CS, Schloss PD, Handelsman J. Metagenomics: genomic analysis of microbial communities. Annu Rev Genet. 2004;38:525-552.
    • (2004) Annu Rev Genet , vol.38 , pp. 525-552
    • Riesenfeld, C.S.1    Schloss, P.D.2    Handelsman, J.3
  • 15
    • 84883110880 scopus 로고    scopus 로고
    • Richness of human gut microbiome correlates with metabolic markers
    • Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 2013;500:541-546.
    • (2013) Nature , vol.500 , pp. 541-546
    • Le Chatelier, E.1    Nielsen, T.2    Qin, J.3
  • 16
    • 84883057637 scopus 로고    scopus 로고
    • Dietary intervention impact on gut microbial gene richness
    • Cotillard A, Kennedy SP, Kong LC, et al. Dietary intervention impact on gut microbial gene richness. Nature. 2013;500:585-588.
    • (2013) Nature , vol.500 , pp. 585-588
    • Cotillard, A.1    Kennedy, S.P.2    Kong, L.C.3
  • 17
    • 84907225684 scopus 로고    scopus 로고
    • Alterations of the human gut microbiome in liver cirrhosis
    • Qin N, Yang F, Li A, et al. Alterations of the human gut microbiome in liver cirrhosis. Nature. 2014;513:59-64.
    • (2014) Nature , vol.513 , pp. 59-64
    • Qin, N.1    Yang, F.2    Li, A.3
  • 18
    • 85006105634 scopus 로고    scopus 로고
    • Shotgun metagenomics of 250 adult twins reveals genetic and environmental impacts on the gut microbiome
    • Xie H, Guo R, Zhong H, et al. Shotgun metagenomics of 250 adult twins reveals genetic and environmental impacts on the gut microbiome. Cell Syst. 2016;3:572-584.e3.
    • (2016) Cell Syst , vol.3 , pp. 572-584.e3
    • Xie, H.1    Guo, R.2    Zhong, H.3
  • 19
    • 0141891348 scopus 로고    scopus 로고
    • Metagenomic analyses of an uncultured viral community from human feces
    • Breitbart M, Hewson I, Felts B, et al. Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol. 2003;185:6220-6223.
    • (2003) J Bacteriol , vol.185 , pp. 6220-6223
    • Breitbart, M.1    Hewson, I.2    Felts, B.3
  • 20
    • 80053528043 scopus 로고    scopus 로고
    • The human gut virome: inter-individual variation and dynamic response to diet
    • Minot S, Sinha R, Chen J, et al. The human gut virome: inter-individual variation and dynamic response to diet. Genome Res. 2011;21:1616-1625.
    • (2011) Genome Res , vol.21 , pp. 1616-1625
    • Minot, S.1    Sinha, R.2    Chen, J.3
  • 21
    • 84884239907 scopus 로고    scopus 로고
    • Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
    • Ogilvie LA, Bowler LD, Caplin J, et al. Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. Nat Commun. 2013;4:2420.
    • (2013) Nat Commun , vol.4 , pp. 2420
    • Ogilvie, L.A.1    Bowler, L.D.2    Caplin, J.3
  • 22
    • 84905041075 scopus 로고    scopus 로고
    • A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
    • Dutilh BE, Cassman N, McNair K, et al. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun. 2014;5:4498.
    • (2014) Nat Commun , vol.5 , pp. 4498
    • Dutilh, B.E.1    Cassman, N.2    McNair, K.3
  • 23
    • 34547455844 scopus 로고    scopus 로고
    • The application of a recently isolated strain of Bacteroides (GB-124) to identify human sources of faecal pollution in a temperate river catchment
    • Ebdon J, Muniesa M, Taylor H. The application of a recently isolated strain of Bacteroides (GB-124) to identify human sources of faecal pollution in a temperate river catchment. Water Res. 2007;41:3683-3690.
    • (2007) Water Res , vol.41 , pp. 3683-3690
    • Ebdon, J.1    Muniesa, M.2    Taylor, H.3
  • 24
    • 84863838397 scopus 로고    scopus 로고
    • Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads
    • Roux S, Krupovic M, Poulet A, Debroas D, Enault F. Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads. PLoS ONE. 2012;7:e40418.
    • (2012) PLoS ONE , vol.7
    • Roux, S.1    Krupovic, M.2    Poulet, A.3    Debroas, D.4    Enault, F.5
  • 25
    • 84902777349 scopus 로고    scopus 로고
    • New viruses in idiopathic human diarrhea cases, the Netherlands
    • Smits SL, Schapendonk CME, van Beek J, et al. New viruses in idiopathic human diarrhea cases, the Netherlands. Emerg Infect Dis. 2014;20:1218-1222.
    • (2014) Emerg Infect Dis , vol.20 , pp. 1218-1222
    • Smits, S.L.1    Schapendonk, C.M.E.2    van Beek, J.3
  • 26
    • 84992152296 scopus 로고    scopus 로고
    • Viral metagenomics applied to blood donors and recipients at high risk for blood-borne infections
    • Sauvage V, Laperche S, Cheval J, et al. Viral metagenomics applied to blood donors and recipients at high risk for blood-borne infections. Blood Transfus Trasfus Sangue. 2016;14:400-407.
    • (2016) Blood Transfus Trasfus Sangue , vol.14 , pp. 400-407
    • Sauvage, V.1    Laperche, S.2    Cheval, J.3
  • 27
    • 77954627922 scopus 로고    scopus 로고
    • Viruses in the faecal microbiota of monozygotic twins and their mothers
    • Reyes A, Haynes M, Hanson N, et al. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 2010;466:334-338.
    • (2010) Nature , vol.466 , pp. 334-338
    • Reyes, A.1    Haynes, M.2    Hanson, N.3
  • 29
    • 84922245262 scopus 로고    scopus 로고
    • Disease-specific alterations in the enteric virome in inflammatory bowel disease
    • Norman JM, Handley SA, Baldridge MT, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell. 2015;160:447-460.
    • (2015) Cell , vol.160 , pp. 447-460
    • Norman, J.M.1    Handley, S.A.2    Baldridge, M.T.3
  • 30
    • 85020737732 scopus 로고    scopus 로고
    • The human gut phage community and its implications for health and disease
    • Manrique P, Dills M, Young MJ. The human gut phage community and its implications for health and disease. Viruses. 2017;9:141.
    • (2017) Viruses , vol.9 , pp. 141
    • Manrique, P.1    Dills, M.2    Young, M.J.3
  • 32
    • 49349118069 scopus 로고    scopus 로고
    • Viral diversity and dynamics in an infant gut
    • Breitbart M, Haynes M, Kelley S, et al. Viral diversity and dynamics in an infant gut. Res Microbiol. 2008;159:367-373.
    • (2008) Res Microbiol , vol.159 , pp. 367-373
    • Breitbart, M.1    Haynes, M.2    Kelley, S.3
  • 34
    • 84879515171 scopus 로고    scopus 로고
    • Bacteriophage adhering to mucus provide a non-host-derived immunity
    • Barr JJ, Auro R, Furlan M, et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A. 2013;110:10771-10776.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 10771-10776
    • Barr, J.J.1    Auro, R.2    Furlan, M.3
  • 35
    • 84943258596 scopus 로고    scopus 로고
    • Effects of long term antibiotic therapy on human oral and fecal viromes
    • Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. Effects of long term antibiotic therapy on human oral and fecal viromes. PLoS ONE. 2015;10:e0134941.
    • (2015) PLoS ONE , vol.10
    • Abeles, S.R.1    Ly, M.2    Santiago-Rodriguez, T.M.3    Pride, D.T.4
  • 36
    • 0034056335 scopus 로고    scopus 로고
    • Quinolone antibiotics induce Shiga toxin-encoding bacteriophages, toxin production, and death in mice
    • Zhang X, McDaniel AD, Wolf LE, Keusch GT, Waldor MK, Acheson DW. Quinolone antibiotics induce Shiga toxin-encoding bacteriophages, toxin production, and death in mice. J Infect Dis. 2000;181:664-670.
    • (2000) J Infect Dis , vol.181 , pp. 664-670
    • Zhang, X.1    McDaniel, A.D.2    Wolf, L.E.3    Keusch, G.T.4    Waldor, M.K.5    Acheson, D.W.6
  • 37
    • 70350545933 scopus 로고    scopus 로고
    • Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
    • Willner D, Furlan M, Haynes M, et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE. 2009;4:e7370.
    • (2009) PLoS ONE , vol.4
    • Willner, D.1    Furlan, M.2    Haynes, M.3
  • 38
    • 85020722090 scopus 로고    scopus 로고
    • Transmission of viruses via our microbiomes
    • Ly M, Jones MB, Abeles SR, et al. Transmission of viruses via our microbiomes. Microbiome. 2016;4:64.
    • (2016) Microbiome , vol.4 , pp. 64
    • Ly, M.1    Jones, M.B.2    Abeles, S.R.3
  • 39
    • 84975275010 scopus 로고    scopus 로고
    • Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
    • Enault F, Briet A, Bouteille L, Roux S, Sullivan MB, Petit M-A. Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses. ISME J. 2017;11:237-247.
    • (2017) ISME J , vol.11 , pp. 237-247
    • Enault, F.1    Briet, A.2    Bouteille, L.3    Roux, S.4    Sullivan, M.B.5    Petit, M.-A.6
  • 40
    • 84875500588 scopus 로고    scopus 로고
    • Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
    • Gansauge M-T, Meyer M. Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat Protoc. 2013;8:737-748.
    • (2013) Nat Protoc , vol.8 , pp. 737-748
    • Gansauge, M.-T.1    Meyer, M.2
  • 41
    • 84941876616 scopus 로고    scopus 로고
    • Structure and diversity of ssDNA Microviridae viruses in two peri-alpine lakes (Annecy and Bourget, France)
    • Zhong X, Guidoni B, Jacas L, Jacquet S. Structure and diversity of ssDNA Microviridae viruses in two peri-alpine lakes (Annecy and Bourget, France). Res Microbiol. 2015;166:644-654.
    • (2015) Res Microbiol , vol.166 , pp. 644-654
    • Zhong, X.1    Guidoni, B.2    Jacas, L.3    Jacquet, S.4
  • 42
    • 85006073389 scopus 로고    scopus 로고
    • Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
    • Roux S, Solonenko NE, Dang VT, et al. Towards quantitative viromics for both double-stranded and single-stranded DNA viruses. PeerJ. 2016;4:e2777.
    • (2016) PeerJ , vol.4
    • Roux, S.1    Solonenko, N.E.2    Dang, V.T.3
  • 43
    • 0019470325 scopus 로고
    • Distribution of ribonucleic acid coliphages in animals
    • Osawa S, Furuse K, Watanabe I. Distribution of ribonucleic acid coliphages in animals. Appl Environ Microbiol. 1981;41:164-168.
    • (1981) Appl Environ Microbiol , vol.41 , pp. 164-168
    • Osawa, S.1    Furuse, K.2    Watanabe, I.3
  • 44
    • 31144459030 scopus 로고    scopus 로고
    • RNA viral community in human feces: prevalence of plant pathogenic viruses
    • Zhang T, Breitbart M, Lee WH, et al. RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 2006;4:e3.
    • (2006) PLoS Biol , vol.4
    • Zhang, T.1    Breitbart, M.2    Lee, W.H.3
  • 45
    • 64149083137 scopus 로고    scopus 로고
    • Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach
    • Nakamura S, Yang C-S, Sakon N, et al. Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS ONE. 2009;4:e4219.
    • (2009) PLoS ONE , vol.4
    • Nakamura, S.1    Yang, C.-S.2    Sakon, N.3
  • 46
    • 84943657766 scopus 로고    scopus 로고
    • Early life dynamics of the human gut virome and bacterial microbiome in infants
    • Lim ES, Zhou Y, Zhao G, et al. Early life dynamics of the human gut virome and bacterial microbiome in infants. Nat Med. 2015;21:1228-1234.
    • (2015) Nat Med , vol.21 , pp. 1228-1234
    • Lim, E.S.1    Zhou, Y.2    Zhao, G.3
  • 47
    • 78049502664 scopus 로고    scopus 로고
    • Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis
    • Roger LC, McCartney AL. Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis. Microbiology. 2010;156:3317-3328.
    • (2010) Microbiology , vol.156 , pp. 3317-3328
    • Roger, L.C.1    McCartney, A.L.2
  • 48
    • 84859014125 scopus 로고    scopus 로고
    • Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing
    • Sim K, Cox MJ, Wopereis H, et al. Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing. PLoS ONE. 2012;7:e32543.
    • (2012) PLoS ONE , vol.7
    • Sim, K.1    Cox, M.J.2    Wopereis, H.3
  • 49
    • 84989245447 scopus 로고    scopus 로고
    • 16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice
    • Walker AW, Martin JC, Scott P, Parkhill J, Flint HJ, Scott KP. 16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice. Microbiome. 2015;3:26.
    • (2015) Microbiome , vol.3 , pp. 26
    • Walker, A.W.1    Martin, J.C.2    Scott, P.3    Parkhill, J.4    Flint, H.J.5    Scott, K.P.6
  • 50
    • 84942883364 scopus 로고    scopus 로고
    • Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
    • Reyes A, Blanton LV, Cao S, et al. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proc Natl Acad Sci U S A. 2015;112:11941-11946.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 11941-11946
    • Reyes, A.1    Blanton, L.V.2    Cao, S.3
  • 52
    • 84961777823 scopus 로고    scopus 로고
    • Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome
    • Monaco CL, Gootenberg DB, Zhao G, et al. Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome. Cell Host Microbe. 2016;19:311-322.
    • (2016) Cell Host Microbe , vol.19 , pp. 311-322
    • Monaco, C.L.1    Gootenberg, D.B.2    Zhao, G.3
  • 53
    • 84867723488 scopus 로고    scopus 로고
    • Detection and identification of plasma bacterial and viral elements in HIV/AIDS patients in comparison to healthy adults
    • Li S-K, Leung RK-K, Guo H-X, et al. Detection and identification of plasma bacterial and viral elements in HIV/AIDS patients in comparison to healthy adults. Clin Microbiol Infect. 2012;18:1126-1133.
    • (2012) Clin Microbiol Infect , vol.18 , pp. 1126-1133
    • Li, S.-K.1    Leung, R.K.-K.2    Guo, H.-X.3
  • 54
    • 33644873469 scopus 로고    scopus 로고
    • Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
    • Breitbart M, Rohwer F. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques. 2005;39:729-736.
    • (2005) Biotechniques , vol.39 , pp. 729-736
    • Breitbart, M.1    Rohwer, F.2
  • 55
  • 56
    • 64849106667 scopus 로고    scopus 로고
    • Tumor-specific bacteriophages induce tumor destruction through activation of tumor-associated macrophages
    • Eriksson F, Tsagozis P, Lundberg K, et al. Tumor-specific bacteriophages induce tumor destruction through activation of tumor-associated macrophages. J Immunol. 2009;182:3105-3111.
    • (2009) J Immunol , vol.182 , pp. 3105-3111
    • Eriksson, F.1    Tsagozis, P.2    Lundberg, K.3
  • 57
    • 84920929686 scopus 로고    scopus 로고
    • An enteric virus can replace the beneficial function of commensal bacteria
    • Kernbauer E, Ding Y, Cadwell K. An enteric virus can replace the beneficial function of commensal bacteria. Nature. 2014;516:94-98.
    • (2014) Nature , vol.516 , pp. 94-98
    • Kernbauer, E.1    Ding, Y.2    Cadwell, K.3
  • 58
    • 85014315210 scopus 로고    scopus 로고
    • Efficacy of sterile fecal filtrate transfer for treating patients with Clostridium difficile infection
    • Ott SJ, Waetzig GH, Rehman A, et al. Efficacy of sterile fecal filtrate transfer for treating patients with Clostridium difficile infection. Gastroenterology. 2017;152:799-811.e7.
    • (2017) Gastroenterology , vol.152 , pp. 799-811.e7
    • Ott, S.J.1    Waetzig, G.H.2    Rehman, A.3
  • 59
    • 85026308810 scopus 로고    scopus 로고
    • Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome
    • Zuo T, Wong SH, Lam K, et al. Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome. Gut. 2017; https://doi.org/10.1136/gutjnl-2017-313952
    • (2017) Gut
    • Zuo, T.1    Wong, S.H.2    Lam, K.3
  • 60
    • 77953904042 scopus 로고    scopus 로고
    • Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine
    • Cadwell K, Patel KK, Maloney NS, et al. Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine. Cell. 2010;141:1135-1145.
    • (2010) Cell , vol.141 , pp. 1135-1145
    • Cadwell, K.1    Patel, K.K.2    Maloney, N.S.3
  • 61
    • 84963959977 scopus 로고    scopus 로고
    • Enteric viruses ameliorate gut inflammation via Toll-like receptor 3 and Toll-like receptor 7-mediated interferon-β production
    • Yang J-Y, Kim M-S, Kim E, et al. Enteric viruses ameliorate gut inflammation via Toll-like receptor 3 and Toll-like receptor 7-mediated interferon-β production. Immunity. 2016;44:889-900.
    • (2016) Immunity , vol.44 , pp. 889-900
    • Yang, J.-Y.1    Kim, M.-S.2    Kim, E.3
  • 62
    • 84884563236 scopus 로고    scopus 로고
    • Bacteriophages in gut samples from pediatric Crohn's disease patients: metagenomic analysis using 454 pyrosequencing
    • Wagner J, Maksimovic J, Farries G, et al. Bacteriophages in gut samples from pediatric Crohn's disease patients: metagenomic analysis using 454 pyrosequencing. Inflamm Bowel Dis. 2013;19:1598-1608.
    • (2013) Inflamm Bowel Dis , vol.19 , pp. 1598-1608
    • Wagner, J.1    Maksimovic, J.2    Farries, G.3
  • 64
    • 84929907601 scopus 로고    scopus 로고
    • Metagenomic analysis of microbiome in colon tissue from subjects with inflammatory bowel diseases reveals interplay of viruses and bacteria
    • Wang W, Jovel J, Halloran B, et al. Metagenomic analysis of microbiome in colon tissue from subjects with inflammatory bowel diseases reveals interplay of viruses and bacteria. Inflamm Bowel Dis. 2015;21:1419-1427.
    • (2015) Inflamm Bowel Dis , vol.21 , pp. 1419-1427
    • Wang, W.1    Jovel, J.2    Halloran, B.3
  • 65
    • 84945278237 scopus 로고    scopus 로고
    • Metagenomic analysis of Crohn's disease patients identifies changes in the virome and microbiome related to disease status and therapy, and detects potential interactions and biomarkers
    • Pérez-Brocal V, García-López R, Nos P, Beltrán B, Moret I, Moya A. Metagenomic analysis of Crohn's disease patients identifies changes in the virome and microbiome related to disease status and therapy, and detects potential interactions and biomarkers. Inflamm Bowel Dis. 2015;21:2515-2532.
    • (2015) Inflamm Bowel Dis , vol.21 , pp. 2515-2532
    • Pérez-Brocal, V.1    García-López, R.2    Nos, P.3    Beltrán, B.4    Moret, I.5    Moya, A.6
  • 66
    • 84946919159 scopus 로고    scopus 로고
    • Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
    • Conceição-Neto N, Zeller M, Lefrère H, et al. Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis. Sci Rep. 2015;5:16532.
    • (2015) Sci Rep , vol.5 , pp. 16532
    • Conceição-Neto, N.1    Zeller, M.2    Lefrère, H.3
  • 67
    • 84924029843 scopus 로고    scopus 로고
    • Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
    • Kleiner M, Hooper LV, Duerkop BA. Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes. BMC Genom. 2015;16:7.
    • (2015) BMC Genom , vol.16 , pp. 7
    • Kleiner, M.1    Hooper, L.V.2    Duerkop, B.A.3
  • 68
    • 84995921776 scopus 로고    scopus 로고
    • The perioperative lung transplant virome: Torque teno viruses are elevated in donor lungs and show divergent dynamics in primary graft dysfunction
    • Abbas AA, Diamond JM, Chehoud C, et al. The perioperative lung transplant virome: Torque teno viruses are elevated in donor lungs and show divergent dynamics in primary graft dysfunction. Am J Transplant. 2016;17:1313-1324.
    • (2016) Am J Transplant , vol.17 , pp. 1313-1324
    • Abbas, A.A.1    Diamond, J.M.2    Chehoud, C.3
  • 69
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter SJ, Cox MJ, Turek EM, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87.
    • (2014) BMC Biol , vol.12 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3
  • 70
    • 84926672739 scopus 로고    scopus 로고
    • Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information
    • Zoll J, Rahamat-Langendoen J, Ahout I, et al. Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information. J Clin Virol. 2015;66:6-11.
    • (2015) J Clin Virol , vol.66 , pp. 6-11
    • Zoll, J.1    Rahamat-Langendoen, J.2    Ahout, I.3
  • 71
    • 14944358901 scopus 로고    scopus 로고
    • Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes
    • Cann AJ, Fandrich SE, Heaphy S. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes. 2005;30:151-156.
    • (2005) Virus Genes , vol.30 , pp. 151-156
    • Cann, A.J.1    Fandrich, S.E.2    Heaphy, S.3
  • 72
    • 33751059692 scopus 로고    scopus 로고
    • The marine viromes of four oceanic regions
    • Angly FE, Felts B, Breitbart M, et al. The marine viromes of four oceanic regions. PLoS Biol. 2006;4:e368.
    • (2006) PLoS Biol , vol.4
    • Angly, F.E.1    Felts, B.2    Breitbart, M.3
  • 73
    • 85030837781 scopus 로고    scopus 로고
    • VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
    • Ren J, Ahlgren NA, Lu YY, Fuhrman JA, Sun F. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. Microbiome. 2017;5:69.
    • (2017) Microbiome , vol.5 , pp. 69
    • Ren, J.1    Ahlgren, N.A.2    Lu, Y.Y.3    Fuhrman, J.A.4    Sun, F.5
  • 74
    • 85016002937 scopus 로고    scopus 로고
    • 2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
    • 2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. Nucleic Acids Res. 2017;45:39-53.
    • (2017) Nucleic Acids Res , vol.45 , pp. 39-53
    • Ahlgren, N.A.1    Ren, J.2    Lu, Y.Y.3    Fuhrman, J.A.4    Sun, F.5
  • 75
    • 84874776480 scopus 로고    scopus 로고
    • A roadmap to the human virome
    • Delwart E. A roadmap to the human virome. PLoS Pathog. 2013;9:e1003146.
    • (2013) PLoS Pathog , vol.9
    • Delwart, E.1
  • 77
    • 34347250859 scopus 로고    scopus 로고
    • Prophage-like gene transfer agents-novel mechanisms of gene exchange for Methanococcus, Desulfovibrio, Brachyspira, and Rhodobacter species
    • Stanton TB. Prophage-like gene transfer agents-novel mechanisms of gene exchange for Methanococcus, Desulfovibrio, Brachyspira, and Rhodobacter species. Anaerobe. 2007;13:43-49.
    • (2007) Anaerobe , vol.13 , pp. 43-49
    • Stanton, T.B.1
  • 78
    • 84922753427 scopus 로고    scopus 로고
    • Transfer of antibiotic-resistance genes via phage-related mobile elements
    • Brown-Jaque M, Calero-Cáceres W, Muniesa M. Transfer of antibiotic-resistance genes via phage-related mobile elements. Plasmid. 2015;79:1-7.
    • (2015) Plasmid , vol.79 , pp. 1-7
    • Brown-Jaque, M.1    Calero-Cáceres, W.2    Muniesa, M.3
  • 79
    • 84872704002 scopus 로고    scopus 로고
    • Exosome can prevent RNase from degrading microRNA in feces
    • Koga Y, Yasunaga M, Moriya Y, et al. Exosome can prevent RNase from degrading microRNA in feces. J Gastrointest Oncol. 2011;2:215-222.
    • (2011) J Gastrointest Oncol , vol.2 , pp. 215-222
    • Koga, Y.1    Yasunaga, M.2    Moriya, Y.3
  • 80
    • 84973659689 scopus 로고    scopus 로고
    • Q&A: What are exosomes, exactly?
    • Edgar JR. Q&A: What are exosomes, exactly? BMC Biol. 2016;14:46.
    • (2016) BMC Biol , vol.14 , pp. 46
    • Edgar, J.R.1
  • 82
    • 84942589342 scopus 로고    scopus 로고
    • Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman
    • Hoyles L, Murphy J, Neve H, et al. Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman. PeerJ. 2015;3:e1061.
    • (2015) PeerJ , vol.3
    • Hoyles, L.1    Murphy, J.2    Neve, H.3
  • 83
    • 84919488763 scopus 로고    scopus 로고
    • Phage tail-like particles kill Clostridium difficile and represent an alternative to conventional antibiotics
    • Sangster W, Hegarty JP, Stewart DB. Phage tail-like particles kill Clostridium difficile and represent an alternative to conventional antibiotics. Surgery. 2015;157:96-103.
    • (2015) Surgery , vol.157 , pp. 96-103
    • Sangster, W.1    Hegarty, J.P.2    Stewart, D.B.3
  • 84
    • 84976276828 scopus 로고    scopus 로고
    • Three new Escherichia coli phages from the human gut show promising potential for phage therapy
    • Dalmasso M, Strain R, Neve H, et al. Three new Escherichia coli phages from the human gut show promising potential for phage therapy. PLoS ONE. 2016;11:e0156773.
    • (2016) PLoS ONE , vol.11
    • Dalmasso, M.1    Strain, R.2    Neve, H.3
  • 85
    • 84976286905 scopus 로고    scopus 로고
    • Lytic bacteriophage PM16 specific for Proteus mirabilis: a novel member of the genus Phikmvvirus
    • Morozova V, Kozlova Y, Shedko E, et al. Lytic bacteriophage PM16 specific for Proteus mirabilis: a novel member of the genus Phikmvvirus. Arch Virol. 2016;161:2457-2472.
    • (2016) Arch Virol , vol.161 , pp. 2457-2472
    • Morozova, V.1    Kozlova, Y.2    Shedko, E.3
  • 86
    • 84903574383 scopus 로고    scopus 로고
    • Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm
    • Cotten M, Oude Munnink B, Canuti M, et al. Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. PLoS ONE. 2014;9:e93269.
    • (2014) PLoS ONE , vol.9
    • Cotten, M.1    Oude Munnink, B.2    Canuti, M.3
  • 87
    • 84946744019 scopus 로고    scopus 로고
    • Direct sequencing of human gut virome fractions obtained by flow cytometry
    • Džunková M, D'Auria G, Moya A. Direct sequencing of human gut virome fractions obtained by flow cytometry. Front Microbiol. 2015;6:955.
    • (2015) Front Microbiol , vol.6 , pp. 955
    • Džunková, M.1    D'Auria, G.2    Moya, A.3
  • 88
    • 84919825539 scopus 로고    scopus 로고
    • Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent
    • Li L, Deng X, Mee ET, et al. Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods. 2015;213:139-146.
    • (2015) J Virol Methods , vol.213 , pp. 139-146
    • Li, L.1    Deng, X.2    Mee, E.T.3
  • 89
    • 19144363310 scopus 로고    scopus 로고
    • PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
    • Angly F, Rodriguez-Brito B, Bangor D, et al. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics. 2005;6:41.
    • (2005) BMC Bioinformatics , vol.6 , pp. 41
    • Angly, F.1    Rodriguez-Brito, B.2    Bangor, D.3
  • 90
    • 75549086985 scopus 로고    scopus 로고
    • ACLAME: a CLAssification of Mobile genetic Elements, update 2010
    • (Database issue)
    • Leplae R, Lima-Mendez G, Toussaint A. ACLAME: a CLAssification of Mobile genetic Elements, update 2010. Nucleic Acids Res. 2010;38(Database issue):D57-D61.
    • (2010) Nucleic Acids Res , vol.38 , pp. D57-D61
    • Leplae, R.1    Lima-Mendez, G.2    Toussaint, A.3
  • 91
    • 80054911634 scopus 로고    scopus 로고
    • Metavir: a web server dedicated to virome analysis
    • Roux S, Faubladier M, Mahul A, et al. Metavir: a web server dedicated to virome analysis. Bioinformatics. 2011;27:3074-3075.
    • (2011) Bioinformatics , vol.27 , pp. 3074-3075
    • Roux, S.1    Faubladier, M.2    Mahul, A.3
  • 92
    • 84899552918 scopus 로고    scopus 로고
    • Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
    • Roux S, Tournayre J, Mahul A, Debroas D, Enault F. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics. 2014;15:76.
    • (2014) BMC Bioinformatics , vol.15 , pp. 76
    • Roux, S.1    Tournayre, J.2    Mahul, A.3    Debroas, D.4    Enault, F.5
  • 93
    • 84865205784 scopus 로고    scopus 로고
    • VIROME: a standard operating procedure for analysis of viral metagenome sequences
    • Wommack KE, Bhavsar J, Polson SW, et al. VIROME: a standard operating procedure for analysis of viral metagenome sequences. Stand Genomic Sci. 2012;6:427-439.
    • (2012) Stand Genomic Sci , vol.6 , pp. 427-439
    • Wommack, K.E.1    Bhavsar, J.2    Polson, S.W.3
  • 94
  • 95
    • 84930658013 scopus 로고    scopus 로고
    • VirSorter: mining viral signal from microbial genomic data
    • Roux S, Enault F, Hurwitz BL, Sullivan MB. VirSorter: mining viral signal from microbial genomic data. PeerJ. 2015;3:e985.
    • (2015) PeerJ , vol.3
    • Roux, S.1    Enault, F.2    Hurwitz, B.L.3    Sullivan, M.B.4
  • 96
    • 84978654074 scopus 로고    scopus 로고
    • ViromeScan: a new tool for metagenomic viral community profiling
    • Rampelli S, Soverini M, Turroni S, et al. ViromeScan: a new tool for metagenomic viral community profiling. BMC Genom. 2016;17:165.
    • (2016) BMC Genom , vol.17 , pp. 165
    • Rampelli, S.1    Soverini, M.2    Turroni, S.3
  • 97
    • 84962425369 scopus 로고    scopus 로고
    • VIP: an integrated pipeline for metagenomics of virus identification and discovery
    • Li Y, Wang H, Nie K, et al. VIP: an integrated pipeline for metagenomics of virus identification and discovery. Sci Rep. 2016;6:23774.
    • (2016) Sci Rep , vol.6 , pp. 23774
    • Li, Y.1    Wang, H.2    Nie, K.3
  • 98
    • 84994558709 scopus 로고    scopus 로고
    • VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
    • Zheng Y, Gao S, Padmanabhan C, et al. VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology. 2017;500:130-138.
    • (2017) Virology , vol.500 , pp. 130-138
    • Zheng, Y.1    Gao, S.2    Padmanabhan, C.3
  • 99
    • 85009382739 scopus 로고    scopus 로고
    • PHASTER: a better, faster version of the PHAST phage search tool
    • Arndt D, Grant JR, Marcu A, et al. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 2016;44:W16-W21.
    • (2016) Nucleic Acids Res , vol.44 , pp. W16-W21
    • Arndt, D.1    Grant, J.R.2    Marcu, A.3
  • 100
    • 85009471217 scopus 로고    scopus 로고
    • VirusSeeker, a computational pipeline for virus discovery and virome composition analysis
    • Zhao G, Wu G, Lim ES, et al. VirusSeeker, a computational pipeline for virus discovery and virome composition analysis. Virology. 2017;503:21-30.
    • (2017) Virology , vol.503 , pp. 21-30
    • Zhao, G.1    Wu, G.2    Lim, E.S.3
  • 101
    • 84902660778 scopus 로고    scopus 로고
    • Defining dysbiosis and its influence on host immunity and disease
    • Petersen C, Round JL. Defining dysbiosis and its influence on host immunity and disease. Cell Microbiol. 2014;16:1024-1033.
    • (2014) Cell Microbiol , vol.16 , pp. 1024-1033
    • Petersen, C.1    Round, J.L.2
  • 103
    • 85008263188 scopus 로고    scopus 로고
    • Microbiota and neurological disorders: a gut feeling
    • Moos WH, Faller DV, Harpp DN, et al. Microbiota and neurological disorders: a gut feeling. BioResearch Open Access. 2016;5:137-145.
    • (2016) BioResearch Open Access , vol.5 , pp. 137-145
    • Moos, W.H.1    Faller, D.V.2    Harpp, D.N.3


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