-
1
-
-
84989205114
-
Defective interfering genomes and Ebola virus persistence
-
Calain, P., Roux, L. & Kolakofsky, D. Defective interfering genomes and Ebola virus persistence. Lancet 388, 659-660 (2016).
-
(2016)
Lancet
, vol.388
, pp. 659-660
-
-
Calain, P.1
Roux, L.2
Kolakofsky, D.3
-
2
-
-
84866275978
-
Prolonged persistence of measles virus RNA is characteristic of primary infection dynamics
-
Lin, W. H., Kouyos, R. D., Adams, R. J., Grenfell, B. T. & Griffin, D. E. Prolonged persistence of measles virus RNA is characteristic of primary infection dynamics. Proc. Natl Acad. Sci. USA 109, 14989-14994 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 14989-14994
-
-
Lin, W.H.1
Kouyos, R.D.2
Adams, R.J.3
Grenfell, B.T.4
Griffin, D.E.5
-
3
-
-
56149112179
-
Respiratory syncytial virus persistence in chronic obstructive pulmonary disease
-
Sikkel, M. B., Quint, J. K., Mallia, P., Wedzicha, J. A. & Johnston, S. L. Respiratory syncytial virus persistence in chronic obstructive pulmonary disease. Pediatr. Infect. Dis. J. 27, S63-S70 (2008).
-
(2008)
Pediatr. Infect. Dis. J.
, vol.27
, pp. S63-S70
-
-
Sikkel, M.B.1
Quint, J.K.2
Mallia, P.3
Wedzicha, J.A.4
Johnston, S.L.5
-
4
-
-
84879120951
-
Networking at the level of host immunity: Immune cell interactions during persistent viral infections
-
Ng Cherie, T., Snell Laura, M., Brooks David, G. & Oldstone Michael, B. A. Networking at the level of host immunity: immune cell interactions during persistent viral infections. Cell Host Microbe 13, 652-664 (2013).
-
(2013)
Cell Host Microbe
, vol.13
, pp. 652-664
-
-
Ng Cherie, T.1
Snell Laura, M.2
Brooks David, G.3
Oldstone Michael, B.A.4
-
5
-
-
84943548621
-
Immunostimulatory defective viral genomes from respiratory syncytial virus promote a strong innate antiviral response during infection in mice and humans
-
e1005122 26336095 4559413
-
Sun, Y. et al. Immunostimulatory defective viral genomes from respiratory syncytial virus promote a strong innate antiviral response during infection in mice and humans. PLoS Pathog. 11, e1005122 (2015).
-
(2015)
PLoS Pathog.
, vol.11
-
-
Sun, Y.1
-
6
-
-
84904891481
-
Defective viral genomes: Critical danger signals of viral infections
-
Lopez, C. B. Defective viral genomes: critical danger signals of viral infections. J. Virol. 88, 8720-8723 (2014).
-
(2014)
J. Virol.
, vol.88
, pp. 8720-8723
-
-
Lopez, C.B.1
-
7
-
-
0029897417
-
Generation of defective interfering particles by two vaccine strains of measles virus
-
Whistler, T., Bellini, W. J. & Rota, P. A. Generation of defective interfering particles by two vaccine strains of measles virus. Virology 220, 480-484 (1996).
-
(1996)
Virology
, vol.220
, pp. 480-484
-
-
Whistler, T.1
Bellini, W.J.2
Rota, P.A.3
-
8
-
-
33745839246
-
Sendai virus defective-interfering genomes and the activation of interferon-beta
-
Strahle, L., Garcin, D. & Kolakofsky, D. Sendai virus defective-interfering genomes and the activation of interferon-beta. Virology 351, 101-111 (2006).
-
(2006)
Virology
, vol.351
, pp. 101-111
-
-
Strahle, L.1
Garcin, D.2
Kolakofsky, D.3
-
9
-
-
84887308873
-
Defective viral genomes arising in vivo provide critical danger signals for the triggering of lung antiviral immunity
-
e1003703 24204261 3814336
-
Tapia, K. et al. Defective viral genomes arising in vivo provide critical danger signals for the triggering of lung antiviral immunity. PLoS Pathog. 9, e1003703 (2013).
-
(2013)
PLoS Pathog.
, vol.9
-
-
Tapia, K.1
-
10
-
-
33749118274
-
A novel role for viral-defective interfering particles in enhancing dendritic cell maturation
-
Yount, J. S., Kraus, T. A., Horvath, C. M., Moran, T. M. & Lopez, C. B. A novel role for viral-defective interfering particles in enhancing dendritic cell maturation. J. Immunol. 177, 4503-4513 (2006).
-
(2006)
J. Immunol.
, vol.177
, pp. 4503-4513
-
-
Yount, J.S.1
Kraus, T.A.2
Horvath, C.M.3
Moran, T.M.4
Lopez, C.B.5
-
11
-
-
0018383037
-
Role of defective interfering particles of Sendai virus in persistent infections
-
Roux, L. & Holland, J. J. Role of defective interfering particles of Sendai virus in persistent infections. Virology 93, 91-103 (1979).
-
(1979)
Virology
, vol.93
, pp. 91-103
-
-
Roux, L.1
Holland, J.J.2
-
12
-
-
0026705089
-
Measles virus from a long-Term persistently infected human T lymphoblastoid cell line, in contrast to the cytocidal parental virus, establishes an immediate persistence in the original cell line
-
Fernandez-Munoz, R. & Celma, M. L. Measles virus from a long-Term persistently infected human T lymphoblastoid cell line, in contrast to the cytocidal parental virus, establishes an immediate persistence in the original cell line. J. Gen. Virol. 73, 2195-2202 (1992).
-
(1992)
J. Gen. Virol.
, vol.73
, pp. 2195-2202
-
-
Fernandez-Munoz, R.1
Celma, M.L.2
-
13
-
-
0042242803
-
Establishment of respiratory syncytial virus persistence in cell lines: Association with defective interfering particles
-
Valdovinos, M. R. & Gomez, B. Establishment of respiratory syncytial virus persistence in cell lines: Association with defective interfering particles. Intervirology 46, 190-198 (2003).
-
(2003)
Intervirology
, vol.46
, pp. 190-198
-
-
Valdovinos, M.R.1
Gomez, B.2
-
14
-
-
0033568373
-
Ebola virus defective interfering particles and persistent infection
-
Calain, P., Monroe, M. C. & Nichol, S. T. ebola virus defective interfering particles and persistent infection. Virology 262, 114-128 (1999).
-
(1999)
Virology
, vol.262
, pp. 114-128
-
-
Calain, P.1
Monroe, M.C.2
Nichol, S.T.3
-
15
-
-
0014961824
-
Defective viral particles and viral disease processes
-
Huang, A. S. & Baltimore, D. Defective viral particles and viral disease processes. Nature 226, 325-327 (1970).
-
(1970)
Nature
, vol.226
, pp. 325-327
-
-
Huang, A.S.1
Baltimore, D.2
-
16
-
-
84883531866
-
Continuous influenza virus production in cell culture shows a periodic accumulation of defective interfering particles
-
Frensing, T. et al. Continuous influenza virus production in cell culture shows a periodic accumulation of defective interfering particles. PLoS ONE 8, e72288 (2013).
-
(2013)
PLoS ONE
, vol.8
-
-
Frensing, T.1
-
17
-
-
0025983849
-
Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo
-
Roux, L., Simon, A. E. & Holland, J. J. Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo. Adv. Virus Res. 40, 181-211 (1991).
-
(1991)
Adv. Virus Res.
, vol.40
, pp. 181-211
-
-
Roux, L.1
Simon, A.E.2
Holland, J.J.3
-
18
-
-
0020684673
-
Genomic and copy-back 3Ê termini in Sendai virus defective interfering RNA species
-
Re, G. G., Gupta, K. C. & Kingsbury, D. W. Genomic and copy-back 3Ê termini in Sendai virus defective interfering RNA species. J. Virol. 45, 659-664 (1983).
-
(1983)
J. Virol.
, vol.45
, pp. 659-664
-
-
Re, G.G.1
Gupta, K.C.2
Kingsbury, D.W.3
-
19
-
-
0017718997
-
Further characterization of Sendai virus DI-RNAs: A model for their generation
-
Leppert, M., Kort, L. & Kolakofsky, D. Further characterization of Sendai virus DI-RNAs: A model for their generation. Cell 12, 539-552 (1977).
-
(1977)
Cell
, vol.12
, pp. 539-552
-
-
Leppert, M.1
Kort, L.2
Kolakofsky, D.3
-
20
-
-
0028144803
-
Cycles, chaos, and evolution in virus cultures: A model of defective interfering particles
-
Kirkwood, T. B. & Bangham, C. R. Cycles, chaos, and evolution in virus cultures: A model of defective interfering particles. Proc. Natl Acad. Sci. USA 91, 8685-8689 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 8685-8689
-
-
Kirkwood, T.B.1
Bangham, C.R.2
-
21
-
-
65549088940
-
Multiple-hit inhibition of infection by defective interfering particles
-
Stauffer Thompson, K. A., Rempala, G. A. & Yin, J. Multiple-hit inhibition of infection by defective interfering particles. J. Gen. Virol. 90, 888-899 (2009).
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 888-899
-
-
Stauffer Thompson, K.A.1
Rempala, G.A.2
Yin, J.3
-
22
-
-
84886953882
-
Highly immunostimulatory RNA derived from a Sendai virus defective viral genome
-
Mercado-Lopez, X. et al. Highly immunostimulatory RNA derived from a Sendai virus defective viral genome. Vaccine 31, 5713-5721 (2013).
-
(2013)
Vaccine
, vol.31
, pp. 5713-5721
-
-
Mercado-Lopez, X.1
-
23
-
-
0032889531
-
Sendai virus infection induces apoptosis through activation of caspase-8 (FLICE) and caspase-3 (CPP32)
-
Bitzer, M. et al. Sendai virus infection induces apoptosis through activation of caspase-8 (FLICE) and caspase-3 (CPP32). J. Virol. 73, 702-708 (1999).
-
(1999)
J. Virol.
, vol.73
, pp. 702-708
-
-
Bitzer, M.1
-
24
-
-
0038666142
-
Virus multiplication and induction of apoptosis by Sendai virus: Role of the C proteins
-
Koyama, A. H., Irie, H., Kato, A., Nagai, Y. & Adachi, A. Virus multiplication and induction of apoptosis by Sendai virus: role of the C proteins. Microbes Infect. 5, 373-378 (2003).
-
(2003)
Microbes Infect.
, vol.5
, pp. 373-378
-
-
Koyama, A.H.1
Irie, H.2
Kato, A.3
Nagai, Y.4
Adachi, A.5
-
25
-
-
0034730713
-
Failure to regulate TNF-induced NF-kappaB and cell death responses in A20-deficient mice
-
Lee, E. G. et al. Failure to regulate TNF-induced NF-kappaB and cell death responses in A20-deficient mice. Science 289, 2350-2354 (2000).
-
(2000)
Science
, vol.289
, pp. 2350-2354
-
-
Lee, E.G.1
-
26
-
-
0032508414
-
NF-kappaB antiapoptosis: Induction of TRAF1 and TRAF2 and c-IAP1 and c-IAP2 to suppress caspase-8 activation
-
Wang, C. Y., Mayo, M. W., Korneluk, R. G., Goeddel, D. V. & Baldwin, A. S. Jr NF-kappaB antiapoptosis: induction of TRAF1 and TRAF2 and c-IAP1 and c-IAP2 to suppress caspase-8 activation. Science 281, 1680-1683 (1998).
-
(1998)
Science
, vol.281
, pp. 1680-1683
-
-
Wang, C.Y.1
Mayo, M.W.2
Korneluk, R.G.3
Goeddel, D.V.4
Baldwin, A.S.5
-
27
-
-
13344278692
-
Suppression of apoptosis in mammalian cells by NAIP and a related family of IAP genes
-
Liston, P. et al. Suppression of apoptosis in mammalian cells by NAIP and a related family of IAP genes. Nature 379, 349-353 (1996).
-
(1996)
Nature
, vol.379
, pp. 349-353
-
-
Liston, P.1
-
28
-
-
0029595282
-
The TNFR2-TRAF signaling complex contains two novel proteins related to baculoviral inhibitor of apoptosis proteins
-
Rothe, M., Pan, M. G., Henzel, W. J., Ayres, T. M. & Goeddel, D. V. The TNFR2-TRAF signaling complex contains two novel proteins related to baculoviral inhibitor of apoptosis proteins. Cell 83, 1243-1252 (1995).
-
(1995)
Cell
, vol.83
, pp. 1243-1252
-
-
Rothe, M.1
Pan, M.G.2
Henzel, W.J.3
Ayres, T.M.4
Goeddel, D.V.5
-
29
-
-
84929875491
-
Regulation of tumour necrosis factor signalling: Live or let die
-
Brenner, D., Blaser, H. & Mak, T. W. Regulation of tumour necrosis factor signalling: live or let die. Nat. Rev. Immunol. 15, 362-374 (2015).
-
(2015)
Nat. Rev. Immunol.
, vol.15
, pp. 362-374
-
-
Brenner, D.1
Blaser, H.2
Mak, T.W.3
-
30
-
-
0026804640
-
Molecular cloning of natural paramyxovirus copy-back defective interfering RNAs and their expression from DNA
-
Calain, P., Curran, J., Kolakofsky, D. & Roux, L. Molecular cloning of natural paramyxovirus copy-back defective interfering RNAs and their expression from DNA. Virology 191, 62-71 (1992).
-
(1992)
Virology
, vol.191
, pp. 62-71
-
-
Calain, P.1
Curran, J.2
Kolakofsky, D.3
Roux, L.4
-
31
-
-
84967215091
-
Viral evasion of intracellular DNA and RNA sensing
-
Chan, Y. K. & Gack, M. U. Viral evasion of intracellular DNA and RNA sensing. Nat. Rev. Microbiol. 14, 360-373 (2016).
-
(2016)
Nat. Rev. Microbiol.
, vol.14
, pp. 360-373
-
-
Chan, Y.K.1
Gack, M.U.2
-
32
-
-
0034115960
-
Tumor necrosis factor (TNF)-Alpha and TNF receptors in viral pathogenesis
-
Herbein, G. & O'Brien, W. A. Tumor necrosis factor (TNF)-Alpha and TNF receptors in viral pathogenesis. Proc. Soc. Exp. Biol. Med. 223, 241-257 (2000).
-
(2000)
Proc. Soc. Exp. Biol. Med.
, vol.223
, pp. 241-257
-
-
Herbein, G.1
O'Brien, W.A.2
-
33
-
-
0036147470
-
Tumor necrosis factor alpha exerts powerful anti-influenza virus effects in lung epithelial cells
-
Seo, S. H. & Webster, R. G. Tumor necrosis factor alpha exerts powerful anti-influenza virus effects in lung epithelial cells. J. Virol. 76, 1071-1076 (2002).
-
(2002)
J. Virol.
, vol.76
, pp. 1071-1076
-
-
Seo, S.H.1
Webster, R.G.2
-
34
-
-
0022639315
-
Tumor necrosis factor induction by Sendai virus
-
Aderka, D., Holtmann, H., Toker, L., Hahn, T. & Wallach, D. Tumor necrosis factor induction by Sendai virus. J. Immunol. 136, 2938-2942 (1986).
-
(1986)
J. Immunol.
, vol.136
, pp. 2938-2942
-
-
Aderka, D.1
Holtmann, H.2
Toker, L.3
Hahn, T.4
Wallach, D.5
-
35
-
-
0023723833
-
Newcastle disease virus as an antineoplastic agent: Induction of tumor necrosis factor-Alpha and augmentation of its cytotoxicity
-
Lorence, R. M., Rood, P. A. & Kelley, K. W. Newcastle disease virus as an antineoplastic agent: induction of tumor necrosis factor-Alpha and augmentation of its cytotoxicity. J. Natl Cancer. Inst. 80, 1305-1312 (1988).
-
(1988)
J. Natl Cancer. Inst.
, vol.80
, pp. 1305-1312
-
-
Lorence, R.M.1
Rood, P.A.2
Kelley, K.W.3
-
36
-
-
84957849485
-
An RNA molecule derived from Sendai virus di particles induces antitumor immunity and cancer cell-selective apoptosis
-
Liu, L.-W., Nishikawa, T. & Kaneda, Y. An RNA molecule derived from Sendai virus DI particles induces antitumor immunity and cancer cell-selective apoptosis. Mol. Ther. 24, 135-145 (2016).
-
(2016)
Mol. Ther.
, vol.24
, pp. 135-145
-
-
Liu, L.-W.1
Nishikawa, T.2
Kaneda, Y.3
-
37
-
-
3943054838
-
De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling
-
Wertz, I. E. et al. De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling. Nature 430, 694-699 (2004).
-
(2004)
Nature
, vol.430
, pp. 694-699
-
-
Wertz, I.E.1
-
38
-
-
0026691240
-
The A20 zinc finger protein protects cells from tumor necrosis factor cytotoxicity
-
Opipari, A. W. Jr., Hu, H. M., Yabkowitz, R. & Dixit, V. M. The A20 zinc finger protein protects cells from tumor necrosis factor cytotoxicity. J. Biol. Chem. 267, 12424-12427 (1992).
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 12424-12427
-
-
Opipari, A.W.1
Hu, H.M.2
Yabkowitz, R.3
Dixit, V.M.4
-
39
-
-
84903726513
-
The deubiquitinase activity of A20 is dispensable for NF-kappaB signaling
-
De, A., Dainichi, T., Rathinam, C. V. & Ghosh, S. The deubiquitinase activity of A20 is dispensable for NF-kappaB signaling. EMBO Rep. 15, 775-783 (2014).
-
(2014)
EMBO Rep.
, vol.15
, pp. 775-783
-
-
De, A.1
Dainichi, T.2
Rathinam, C.V.3
Ghosh, S.4
-
40
-
-
84930330653
-
TRAF1 coordinates polyubiquitin signaling to enhance Epstein-Barr virus LMP1-mediated growth and survival pathway activation
-
e1004890 25996949 4440769
-
Greenfeld, H. et al. TRAF1 coordinates polyubiquitin signaling to enhance Epstein-Barr virus LMP1-mediated growth and survival pathway activation. PLoS Pathog. 11, e1004890 (2015).
-
(2015)
PLoS Pathog.
, vol.11
-
-
Greenfeld, H.1
-
41
-
-
84856480470
-
Stochastic expression of the interferon-β gene
-
e1001249 1:CAS:528:DC%2BC38XitFykurw%3D 22291574 3265471
-
Zhao, M., Zhang, J., Phatnani, H., Scheu, S. & Maniatis, T. Stochastic expression of the interferon-β gene. PLoS Biol. 10, e1001249 (2012).
-
(2012)
PLoS Biol.
, vol.10
-
-
Zhao, M.1
Zhang, J.2
Phatnani, H.3
Scheu, S.4
Maniatis, T.5
-
42
-
-
79951559704
-
Role of cell-To-cell variability in activating a positive feedback antiviral response in human dendritic cells
-
e16614 2011PLoSO.616614H 1:CAS:528:DC%2BC3MXitlOqs7s%3D 21347441 3035661
-
Hu, J. et al. Role of cell-To-cell variability in activating a positive feedback antiviral response in human dendritic cells. PLoS ONE 6, e16614 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Hu, J.1
-
43
-
-
84959253492
-
Activation of RNase L is dependent on OAS3 expression during infection with diverse human viruses
-
Li, Y. et al. Activation of RNase L is dependent on OAS3 expression during infection with diverse human viruses. Proc. Natl Acad. Sci. USA 113, 2241-2246 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. 2241-2246
-
-
Li, Y.1
-
44
-
-
85030790226
-
Preparation of respiratoryial virus with high or low content of defective viral particles and their purification from viral stocks
-
Sun, Y. & López, C. B. Preparation of respiratoryial virus with high or low content of defective viral particles and their purification from viral stocks. Bio-protocol 6(10): e1820 (2016).
-
(2016)
Bio-protocol
, vol.6
, Issue.10
, pp. e1820
-
-
Sun, Y.1
López, C.B.2
-
45
-
-
84946616112
-
Identification of a natural viral RNA motif that optimizes sensing of viral RNA by RIG
-
Xu, J. et al. Identification of a natural viral RNA motif that optimizes sensing of viral RNA by RIG-I. MBio. 6, doi: 10.1128/mBio.01265-15 (2015).
-
(2015)
MBio
, vol.6
-
-
Xu, J.1
-
46
-
-
85030758340
-
A bioconductor R pipeline for analysis of RNA-seq data
-
Shi, W. A bioconductor R pipeline for analysis of RNA-seq data. Protocol Exchange. http://dx.doi.org/10.1038/protex.2015.039 (2015).
-
(2015)
Protocol Exchange
-
-
Shi, W.1
-
47
-
-
84966283954
-
Near-optimal probabilistic RNA-seq quantification
-
Bray, N. L., Pimentel, H., Melsted, P. & Pachter, L. Near-optimal probabilistic RNA-seq quantification. Nat. Biotechnol. 34, 525-527 (2016).
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 525-527
-
-
Bray, N.L.1
Pimentel, H.2
Melsted, P.3
Pachter, L.4
-
48
-
-
85010908291
-
Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences
-
Soneson, C., Love, M. I. & Robinson, M. D. Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences. F1000Research 4, 1521 (2015).
-
(2015)
F1000Research
, vol.4
-
-
Soneson, C.1
Love, M.I.2
Robinson, M.D.3
-
49
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
R29 24485249 4053721
-
Law, C. W., Chen, Y., Shi, W. & Smyth, G. K. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15, R29 (2014).
-
(2014)
Genome Biol.
, vol.15
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
50
-
-
84926507971
-
Limma powers differential expression analyses for RNA-sequencing and microarray studies
-
e47 25605792 4402510
-
Ritchie, M. E. et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
-
-
Ritchie, M.E.1
-
51
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang da, W., Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
52
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
53
-
-
84878580738
-
The Subread aligner: Fast, accurate and scalable read mapping by seed-And-vote
-
Liao, Y., Smyth, G. K. & Shi, W. The Subread aligner: fast, accurate and scalable read mapping by seed-And-vote. Nucleic Acids Res. 41, e108 (2013).
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(2013)
Nucleic Acids Res.
, vol.41
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Liao, Y.1
Smyth, G.K.2
Shi, W.3
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