-
1
-
-
84938846796
-
Contribution of diet to the composition of the human gut microbiota
-
Graf, D., et al. Contribution of diet to the composition of the human gut microbiota. Microb. Ecol. Health Dis. 26, 26164 (2015).
-
(2015)
Microb. Ecol. Health Dis.
, vol.26
, pp. 26164
-
-
Graf, D.1
-
2
-
-
84910057313
-
Host lifestyle affects human microbiota on daily timescales
-
David, L. A., et al. Host lifestyle affects human microbiota on daily timescales. Genome Biol. 15, R89 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R89
-
-
David, L.A.1
-
3
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P. J., et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-31 (2006).
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
-
4
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
Kau, A. L., Ahern, P. P., Griffin, N. W., Goodman, A. L., Gordon, J. I. Human nutrition, the gut microbiome and the immune system. Nature 474, 327-336 (2011).
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
5
-
-
79952284127
-
Review Hallmarks of Cancer: The Next Generation
-
Hanahan, D., Weinberg, R. A. Review Hallmarks of Cancer: The Next Generation. Cell 144, 646-674 (2011).
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
6
-
-
0035902067
-
Cancer epidemiology in the lastcentury and the next decade
-
Peto, J. Cancer epidemiology in the last century and the next decade. Nature 411, 390-395 (2001).
-
(2001)
Nature
, vol.411
, pp. 390-395
-
-
Peto, J.1
-
7
-
-
84957795451
-
The Microbiome and Cancer: Is the 'Oncobiome' mirage real
-
Thomas, R. M., Jobin, C. The Microbiome and Cancer: Is the 'Oncobiome' Mirage Real Trends in Cancer 1, 24-35 (2015).
-
(2015)
Trends in Cancer
, vol.1
, pp. 24-35
-
-
Thomas, R.M.1
Jobin, C.2
-
10
-
-
84976612100
-
Alterations of the human gut microbiome in multiple sclerosis
-
Jangi, S., et al. Alterations of the human gut microbiome in multiple sclerosis. Nat. Commun. 7, 12015 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 12015
-
-
Jangi, S.1
-
11
-
-
84901495085
-
Microbiome inflammation, and cancer
-
Francescone, R., Hou, V., Grivennikov, S. I. Microbiome, inflammation, and cancer. Cancer J., 20, 181-9 (2014).
-
(2014)
Cancer J.
, vol.20
, pp. 181-189
-
-
Francescone, R.1
Hou, V.2
Grivennikov, S.I.3
-
12
-
-
84868613705
-
Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth
-
Grivennikov, S. I., et al. Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth. Nature 491, 254-8 (2012).
-
(2012)
Nature
, vol.491
, pp. 254-258
-
-
Grivennikov, S.I.1
-
13
-
-
84990996554
-
Normalizing Microbiota-Induced Retinoic Acid Deficiency Stimulates Protective CD8+T Cell-Mediated Immunity in Colorectal Cancer
-
Bhattacharya, N., et al. Normalizing Microbiota-Induced Retinoic Acid Deficiency Stimulates Protective CD8+T Cell-Mediated Immunity in Colorectal Cancer. Immunity 45, 641-655 (2016).
-
(2016)
Immunity
, vol.45
, pp. 641-655
-
-
Bhattacharya, N.1
-
14
-
-
84897138296
-
Role of the Microbiota in Immunity and Inflammation
-
Belkaid, Y., Hand, T. W. Role of the Microbiota in Immunity and Inflammation. Cell 157, 121-141 (2014).
-
(2014)
Cell
, vol.157
, pp. 121-141
-
-
Belkaid, Y.1
Hand, T.W.2
-
15
-
-
84866167497
-
Reciprocal interactions of the intestinal microbiota and immune system
-
Maynard, C. L., Elson, C. O., Hatton, R. D., Weaver, C. T. Reciprocal interactions of the intestinal microbiota and immune system. Nature 489, 231-41 (2012).
-
(2012)
Nature
, vol.489
, pp. 231-241
-
-
Maynard, C.L.1
Elson, C.O.2
Hatton, R.D.3
Weaver, C.T.4
-
16
-
-
84962788254
-
Microbiome, Anticancer Immunosurveillance
-
Zitvogel, L., Ayyoub, M., Routy, B., Kroemer, G. Microbiome and Anticancer Immunosurveillance. Cell 165, 276-287 (2016).
-
(2016)
Cell
, vol.165
, pp. 276-287
-
-
Zitvogel, L.1
Ayyoub, M.2
Routy, B.3
Kroemer, G.4
-
17
-
-
84859812538
-
Promotion of Hepatocellular Carcinoma by the instestinal Microbiota and TLR4
-
Dapito, Dh, et al. Promotion of Hepatocellular Carcinoma by the instestinal Microbiota and TLR4. Cancer Cell 21, 504-516 (2013).
-
(2013)
Cancer Cell
, vol.21
, pp. 504-516
-
-
Dh, D.1
-
18
-
-
84897449654
-
Microbial dysbiosis is associated with human breast Cancer
-
Xuan, C., et al. Microbial Dysbiosis Is Associated with Human Breast Cancer. PLoS One 9, e83744 (2014).
-
(2014)
PLoS One
, vol.9
, pp. e83744
-
-
Xuan, C.1
-
19
-
-
84990234576
-
Signals from the gut microbiota to distant organs in physiology and disease
-
Schroeder, B. O., Bäckhed, F. Signals from the gut microbiota to distant organs in physiology and disease. Nat. Med. 22, 1079-1089 (2016).
-
(2016)
Nat. Med.
, vol.22
, pp. 1079-1089
-
-
Schroeder, B.O.1
Bäckhed, F.2
-
20
-
-
84867845255
-
The interplay between the intestinal microbiota and the brain
-
Collins, S. M., Surette, M., Bercik, P. The interplay between the intestinal microbiota and the brain. Nat. Rev. Microbiol. 10, 735-742 (2012).
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 735-742
-
-
Collins, S.M.1
Surette, M.2
Bercik, P.3
-
21
-
-
79960645242
-
Gut feelings: The emerging biology of gut-brain communication
-
Mayer, E. A. Gut feelings: The emerging biology of gut-brain communication. Nat. Rev. Neurosci. 12, 453-66 (2011).
-
(2011)
Nat. Rev. Neurosci.
, vol.12
, pp. 453-466
-
-
Mayer, E.A.1
-
22
-
-
84899699114
-
Immune modulation of the brain-gut-microbe axis
-
Aidy, S. E., Dinan, T. G., Cryan, J. F. Immune modulation of the brain-gut-microbe axis. Front. Microbiol. 5, 3-6 (2014).
-
(2014)
Front. Microbiol.
, vol.5
, pp. 3-6
-
-
Aidy, S.E.1
Dinan, T.G.2
Cryan, J.F.3
-
23
-
-
0242666126
-
A genetic screen in drosophila for metatstatic behavior
-
Pagliarini, R. A., Xu, T. A Genetic Screen in Drosophila for Metatstatic Behavior. Science (80-.). 302, 1227-1231 (2003).
-
(2003)
Science
, vol.80
, Issue.302
, pp. 1227-1231
-
-
Pagliarini, R.A.1
Xu, T.2
-
24
-
-
84920644670
-
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
-
Salter, S. J., et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 12, 87 (2014).
-
(2014)
BMC Biol.
, vol.12
, pp. 87
-
-
Salter, S.J.1
-
25
-
-
84880286399
-
Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol
-
Milani, C., et al. Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol. PLoS One 8 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Milani, C.1
-
26
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., et al. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-41 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
-
27
-
-
78049240050
-
The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA Gene-Based studies
-
Schloss, P. D., et al. The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies. PLoS Comput. Biol. 6, e1000844 (2010).
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000844
-
-
Schloss, P.D.1
-
28
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast, C., et al. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D590-D596
-
-
Quast, C.1
-
29
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-7 (2007).
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
31
-
-
84876427223
-
Phyloseq:An R package for reproducible interactive analysis and graphics of microbiome census data
-
McMurdie, P. J., Holmes, S. Phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLoS One 8 (2013).
-
(2013)
PLoS One
, vol.8
-
-
McMurdie, P.J.1
Holmes, S.2
-
32
-
-
33751258603
-
The bacterial species dilemma and the genomic-phylogenetic species concept
-
Staley, J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 361, 1899-909 (2006).
-
(2006)
Philos. Trans. R. Soc. Lond. B. Biol. Sci.
, vol.361
, pp. 1899-1909
-
-
Staley, J.T.1
-
33
-
-
84966430254
-
Characterization of the gut microbiome using 16S or shotgun metagenomics
-
Jovel, J., et al. Characterization of the gut microbiome using 16S or shotgun metagenomics. Front. Microbiol. 7, 1-17 (2016).
-
(2016)
Front. Microbiol.
, vol.7
, pp. 1-17
-
-
Jovel, J.1
-
34
-
-
84992119898
-
INEXT: An R package for rarefaction and extrapolation of species diversity (Hill numbers
-
Hsieh, T. C., Ma, K. H., Chao, A. iNEXT: An R package for rarefaction and extrapolation of species diversity (Hill numbers). Methods Ecol. Evol. 1451-1456, doi: 10.1111/2041-210X.12613 (2016).
-
(2016)
Methods Ecol. Evol.
, pp. 1451-1456
-
-
Hsieh, T.C.1
Ma, K.H.2
Chao, A.3
-
35
-
-
85030711851
-
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels
-
Lau, M. Functions for re-sampling a community matrix to compute diversity indices at different sampling levels. R Packag. version 2, 1 (2014).
-
(2014)
R Packag. Version
, vol.2
, pp. 1
-
-
Lau, M.1
-
36
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good, I. J. The Population Frequencies of Species and the Estimation of Population Parameters. Biometrika 40, 237-264 (1953).
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
37
-
-
84947402121
-
Rectangular Confidence Regions for the Means of Multivariate Normal Distributions
-
Šidák, Z. Rectangular Confidence Regions for the Means of Multivariate Normal Distributions. J. Am. Stat. Assoc. 62, 626-633 (1967).
-
(1967)
J. Am. Stat. Assoc.
, vol.62
, pp. 626-633
-
-
Šidák, Z.1
-
39
-
-
84908321872
-
Transient adult microbiota, gut homeostasis and longevity: Novel insights from the Drosophila model
-
Erkosar, B., Leulier, F. Transient adult microbiota, gut homeostasis and longevity: Novel insights from the Drosophila model. FEBS Lett. 588, 4250-4257 (2014).
-
(2014)
FEBS Lett.
, vol.588
, pp. 4250-4257
-
-
Erkosar, B.1
Leulier, F.2
-
40
-
-
84866461477
-
Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
-
Ubeda, C., et al. Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. J. Exp. Med. 209, 1445-56 (2012).
-
(2012)
J. Exp. Med.
, vol.209
, pp. 1445-1456
-
-
Ubeda, C.1
-
41
-
-
80053435147
-
Bacterial communities of diverse Drosophila species: Ecological context of a host-microbe model system
-
Chandler, J. A., Lang, J., Bhatnagar, S., Eisen, J. A., Kopp, A. Bacterial communities of diverse Drosophila species: Ecological context of a host-microbe model system. PLoS Genet. 7 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Chandler, J.A.1
Lang, J.2
Bhatnagar, S.3
Eisen, J.A.4
Kopp, A.5
-
42
-
-
84996841788
-
Exploring relationships between host genome and microbiome: New insights from genome-wide association studies
-
Abdul-Aziz, M. A., Cooper, A., Weyrich, L. S. Exploring relationships between host genome and microbiome: New insights from genome-wide association studies. Front. Microbiol. 7, 1-9 (2016).
-
(2016)
Front. Microbiol.
, vol.7
, pp. 1-9
-
-
Abdul-Aziz, M.A.1
Cooper, A.2
Weyrich, L.S.3
-
43
-
-
54949146893
-
Scrib regulates PAK activity during the cell migration process
-
Nola, S., et al. Scrib regulates PAK activity during the cell migration process. Hum. Mol. Genet. 17, 3552-3565 (2008).
-
(2008)
Hum. Mol. Genet.
, vol.17
, pp. 3552-3565
-
-
Nola, S.1
-
44
-
-
84896851032
-
Intestinal epithelial cells: Regulators of barrier function and immune homeostasis
-
Peterson, L. W., Artis, D. Intestinal epithelial cells: Regulators of barrier function and immune homeostasis. Nat. Rev. Immunol. 14, 141-153 (2014).
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 141-153
-
-
Peterson, L.W.1
Artis, D.2
-
45
-
-
84875412051
-
Drosophila melanogaster: A model and a tool to investigate malignancy and identify new therapeutics
-
Gonzalez, C. Drosophila melanogaster: A model and a tool to investigate malignancy and identify new therapeutics. Nat. Rev. Cancer 13, 172-83 (2013).
-
(2013)
Nat. Rev. Cancer
, vol.13
, pp. 172-183
-
-
Gonzalez, C.1
-
46
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko, T., et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
-
47
-
-
1542515338
-
A census of human cancer genes
-
Futreal, P. A., et al. A census of human cancer genes. Nat. Rev. Cancer 4, 177-83 (2004).
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 177-183
-
-
Futreal, P.A.1
-
48
-
-
84964682615
-
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
-
Vatanen, T., et al. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. Cell 165, 842-853 (2016).
-
(2016)
Cell
, vol.165
, pp. 842-853
-
-
Vatanen, T.1
-
49
-
-
83655182943
-
Bacterial outer membrane evolution via sporulation Nat
-
Vollmer, W. Bacterial outer membrane evolution via sporulation Nat. Chem. Biol. 8, 14-18 (2011).
-
(2011)
Chem. Biol.
, vol.8
, pp. 14-18
-
-
Vollmer, W.1
-
50
-
-
1842587726
-
Newly isolated bacterial strains belonging to Bacillaceae (Bacillus sp.) and Micrococcaceae accelerate death of the honey bee mite Varroa destructor (V. Jacobsoni), in laboratory assays
-
Tsagou, V., Lianou, A., Lazarakis, D., Emmanouel, N., Aggelis, G. Newly isolated bacterial strains belonging to Bacillaceae (Bacillus sp.) and Micrococcaceae accelerate death of the honey bee mite, Varroa destructor (V. jacobsoni), in laboratory assays. Biotechnol. Lett. 26, 529-532 (2004).
-
(2004)
Biotechnol. Lett.
, vol.26
, pp. 529-532
-
-
Tsagou, V.1
Lianou, A.2
Lazarakis, D.3
Emmanouel, N.4
Aggelis, G.5
-
51
-
-
85030682507
-
Diversity of the Human Intestinal Microbial Flora Paul
-
Eckburg, P. B., et al. Diversity of the Human Intestinal Microbial Flora Paul. Science (80-.). 148, 895-901 (2010).
-
(2010)
Science
, vol.80
, Issue.148
, pp. 895-901
-
-
Eckburg, P.B.1
-
52
-
-
84978132171
-
Gut microbiota, inflammation and colorectal cancer
-
Sun, J., Kato, I. Gut microbiota, inflammation and colorectal cancer. Genes Dis. 3, 130-143 (2016).
-
(2016)
Genes Dis.
, vol.3
, pp. 130-143
-
-
Sun, J.1
Kato, I.2
-
53
-
-
84978732502
-
Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
-
Shin, J., et al. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing. Nat. Publ. Gr., doi: 10.1038/srep29681 (2016).
-
Nat. Publ. Gr.
, vol.2016
-
-
Shin, J.1
-
54
-
-
84895533248
-
Conserved mechanisms of tumorigenesis in the Drosophila adult midgut
-
Martorell, Ò., et al. Conserved mechanisms of tumorigenesis in the Drosophila adult midgut. PLoS One 9, e88413 (2014).
-
(2014)
PLoS One
, vol.9
, pp. e88413
-
-
Martorell, Ò.1
-
55
-
-
84930910978
-
Changes in intestinal barrier function and gut microbiota in high-fat diet-fed rats are dynamic and region dependent
-
Hamilton, M. K., Boudry, G., Lemay, D. G., Raybould, H. E. Changes in intestinal barrier function and gut microbiota in high-fat diet-fed rats are dynamic and region dependent. Am J Physiol Gastrointest Liver Physiol 308, G840-51 (2015).
-
(2015)
Am J Physiol Gastrointest Liver Physiol
, vol.308
, pp. G840-G851
-
-
Hamilton, M.K.1
Boudry, G.2
Lemay, D.G.3
Raybould, H.E.4
-
56
-
-
84908151057
-
Is eating behavior manipulated by the gastrointestinal microbiota Evolutionary pressures and potential mechanisms
-
Alcock, J., Maley, C. C., Aktipis, C. A. Is eating behavior manipulated by the gastrointestinal microbiota Evolutionary pressures and potential mechanisms. Bioessays 940-949, doi: 10.1002/bies.201400071 (2014).
-
(2014)
Bioessays
, pp. 940-949
-
-
Alcock, J.1
Maley, C.C.2
Aktipis, C.A.3
-
58
-
-
79959201412
-
Human nutrition, the gut microbiome, and immune system: Envisioning the future
-
Kau, A. L., Ahern, P. P., Griffin, N. W., Goodman, A. L., Jeffrey, I. Human nutrition, the gut microbiome, and immune system: Envisioning the future. Nature 474, 327-336 (2012).
-
(2012)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Jeffrey, I.5
|