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Volumn 18, Issue 10, 2017, Pages 1160-1172

Corrigendum: Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues (Nature Immunology (2017) 18 (1160-1172) DOI: 10.1038/ni.3799);Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA; TRANSCRIPTOME; BIOLOGICAL MARKER;

EID: 85030619777     PISSN: 15292908     EISSN: 15292916     Source Type: Journal    
DOI: 10.1038/ni1217-1361b     Document Type: Erratum
Times cited : (197)

References (49)
  • 1
    • 84859416933 scopus 로고    scopus 로고
    • Regulatory T cells: Mechanisms of differentiation and function
    • Josefowicz, S. Z., Lu, L. F. & Rudensky, A. Y. Regulatory T cells: mechanisms of differentiation and function. Annu. Rev. Immunol. 30, 531-564 (2012).
    • (2012) Annu. Rev. Immunol. , vol.30 , pp. 531-564
    • Josefowicz, S.Z.1    Lu, L.F.2    Rudensky, A.Y.3
  • 4
    • 68349148211 scopus 로고    scopus 로고
    • Lean, but not obese, fat is enriched for a unique population of regulatory T cells that affect metabolic parameters
    • Feuerer, M. et al. Lean, but not obese, fat is enriched for a unique population of regulatory T cells that affect metabolic parameters. Nat. Med. 15, 930-939 (2009).
    • (2009) Nat. Med. , vol.15 , pp. 930-939
    • Feuerer, M.1
  • 5
    • 84862986986 scopus 로고    scopus 로고
    • PPAR is a major driver of the accumulation and phenotype of adipose tissue Treg cells
    • Cipolletta, D. et al. PPAR is a major driver of the accumulation and phenotype of adipose tissue Treg cells. Nature 486, 549-553 (2012).
    • (2012) Nature , vol.486 , pp. 549-553
    • Cipolletta, D.1
  • 6
    • 84923607143 scopus 로고    scopus 로고
    • The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue-resident regulatory T cells
    • Vasanthakumar, A. et al. The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue-resident regulatory T cells. Nat. Immunol. 16, 276-285 (2015).
    • (2015) Nat. Immunol. , vol.16 , pp. 276-285
    • Vasanthakumar, A.1
  • 7
    • 84890050252 scopus 로고    scopus 로고
    • A special population of regulatory T cells potentiates muscle repair
    • Burzyn, D. et al. A special population of regulatory T cells potentiates muscle repair. Cell 155, 1282-1295 (2013).
    • (2013) Cell , vol.155 , pp. 1282-1295
    • Burzyn, D.1
  • 8
    • 84940380928 scopus 로고    scopus 로고
    • A distinct function of regulatory T cells in tissue protection
    • Arpaia, N. et al. A distinct function of regulatory T cells in tissue protection. Cell 162, 1078-1089 (2015).
    • (2015) Cell , vol.162 , pp. 1078-1089
    • Arpaia, N.1
  • 9
    • 84920724791 scopus 로고    scopus 로고
    • Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
    • Lavin, Y. et al. Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell 159, 1312-1326 (2014).
    • (2014) Cell , vol.159 , pp. 1312-1326
    • Lavin, Y.1
  • 10
    • 84920724792 scopus 로고    scopus 로고
    • Environment drives selection and function of enhancers controlling tissue-specific macrophage identities
    • Gosselin, D. et al. Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell 159, 1327-1340 (2014).
    • (2014) Cell , vol.159 , pp. 1327-1340
    • Gosselin, D.1
  • 11
    • 84922541996 scopus 로고    scopus 로고
    • Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis
    • Cabezas-Wallscheid, N. et al. Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis. Cell Stem Cell 15, 507-522 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 507-522
    • Cabezas-Wallscheid, N.1
  • 12
    • 85055463515 scopus 로고    scopus 로고
    • Epigenetic control of the foxp3 locus in regulatory T cells
    • Floess, S. et al. Epigenetic control of the foxp3 locus in regulatory T cells. PLoS Biol. 5, e38 (2007).
    • (2007) PLoS Biol. , vol.5 , pp. e38
    • Floess, S.1
  • 13
    • 84869148187 scopus 로고    scopus 로고
    • T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development
    • Ohkura, N. et al. T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development. Immunity 37, 785-799 (2012).
    • (2012) Immunity , vol.37 , pp. 785-799
    • Ohkura, N.1
  • 14
    • 84940077758 scopus 로고    scopus 로고
    • Mucosal immunology. Individual intestinal symbionts induce a distinct population of ROR+ regulatory T cells
    • Sefik, E. et al. Mucosal immunology. Individual intestinal symbionts induce a distinct population of ROR+ regulatory T cells. Science 349, 993-997 (2015).
    • (2015) Science , vol.349 , pp. 993-997
    • Sefik, E.1
  • 16
    • 58149214356 scopus 로고    scopus 로고
    • Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells
    • Wei, G. et al. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 30, 155-167 (2009).
    • (2009) Immunity , vol.30 , pp. 155-167
    • Wei, G.1
  • 17
    • 84937557838 scopus 로고    scopus 로고
    • Interleukin-33 in tissue homeostasis, injury, and inflammation
    • Molofsky, A. B., Savage, A. K. & Locksley, R. M. Interleukin-33 in tissue homeostasis, injury, and inflammation. Immunity 42, 1005-1019 (2015).
    • (2015) Immunity , vol.42 , pp. 1005-1019
    • Molofsky, A.B.1    Savage, A.K.2    Locksley, R.M.3
  • 18
    • 77649184739 scopus 로고    scopus 로고
    • The regulation of IL-10 production by immune cells
    • Saraiva, M. & O'Garra, A. The regulation of IL-10 production by immune cells. Nat. Rev. Immunol. 10, 170-181 (2010).
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 170-181
    • Saraiva, M.1    O'Garra, A.2
  • 19
    • 84941021874 scopus 로고    scopus 로고
    • Role of DNA methylation in modulating transcription factor occupancy
    • Maurano, M. T. et al. Role of DNA methylation in modulating transcription factor occupancy. Cell Rep. 12, 1184-1195 (2015).
    • (2015) Cell Rep. , vol.12 , pp. 1184-1195
    • Maurano, M.T.1
  • 20
    • 84867861268 scopus 로고    scopus 로고
    • BATF-JUN is critical for IRF4-mediated transcription in T cells
    • Li, P. et al. BATF-JUN is critical for IRF4-mediated transcription in T cells. Nature 490, 543-546 (2012).
    • (2012) Nature , vol.490 , pp. 543-546
    • Li, P.1
  • 21
    • 33845713725 scopus 로고    scopus 로고
    • Amphiregulin, a TH2 cytokine enhancing resistance to nematodes
    • Zaiss, D. M. et al. Amphiregulin, a TH2 cytokine enhancing resistance to nematodes. Science 314, 1746 (2006).
    • (2006) Science , vol.314 , pp. 1746
    • Zaiss, D.M.1
  • 23
    • 79958251745 scopus 로고    scopus 로고
    • T cell receptor signal strength in Treg and iNKT cell development demonstrated by a novel fluorescent reporter mouse
    • Moran, A. E. et al. T cell receptor signal strength in Treg and iNKT cell development demonstrated by a novel fluorescent reporter mouse. J. Exp. Med. 208, 1279-1289 (2011).
    • (2011) J. Exp. Med. , vol.208 , pp. 1279-1289
    • Moran, A.E.1
  • 25
    • 84969786022 scopus 로고    scopus 로고
    • GPR55-a putative "type 3" cannabinoid receptor in inflammation
    • Yang, H., Zhou, J. & Lehmann, C. GPR55-a putative "type 3" cannabinoid receptor in inflammation. J. Basic Clin. Physiol. Pharmacol. 27, 297-302 (2016).
    • (2016) J. Basic Clin. Physiol. Pharmacol. , vol.27 , pp. 297-302
    • Yang, H.1    Zhou, J.2    Lehmann, C.3
  • 26
    • 51549099779 scopus 로고    scopus 로고
    • The putative cannabinoid receptor GPR55 plays a role in mechanical hyperalgesia associated with inflammatory and neuropathic pain
    • Staton, P. C. et al. The putative cannabinoid receptor GPR55 plays a role in mechanical hyperalgesia associated with inflammatory and neuropathic pain. Pain 139, 225-236 (2008).
    • (2008) Pain , vol.139 , pp. 225-236
    • Staton, P.C.1
  • 27
    • 84928407438 scopus 로고    scopus 로고
    • Antigen-and cytokine-driven accumulation of regulatory T cells in visceral adipose tissue of lean mice
    • Kolodin, D. et al. Antigen-and cytokine-driven accumulation of regulatory T cells in visceral adipose tissue of lean mice. Cell Metab. 21, 543-557 (2015).
    • (2015) Cell Metab. , vol.21 , pp. 543-557
    • Kolodin, D.1
  • 28
    • 84964681411 scopus 로고    scopus 로고
    • Driving allotolerance: CAR-expressing Tregs for tolerance induction in organ and stem cell transplantation
    • Edinger, M. Driving allotolerance: CAR-expressing Tregs for tolerance induction in organ and stem cell transplantation. J. Clin. Invest. 126, 1248-1250 (2016).
    • (2016) J. Clin. Invest. , vol.126 , pp. 1248-1250
    • Edinger, M.1
  • 29
    • 84906571227 scopus 로고    scopus 로고
    • The alarmin IL-33 promotes regulatory T-cell function in the intestine
    • Schiering, C. et al. The alarmin IL-33 promotes regulatory T-cell function in the intestine. Nature 513, 564-568 (2014).
    • (2014) Nature , vol.513 , pp. 564-568
    • Schiering, C.1
  • 30
    • 84946887780 scopus 로고    scopus 로고
    • Treg-mediated immune tolerance and the risk of solid cancers: Findings from EPIC-Heidelberg
    • Barth, S. D. et al. Treg-mediated immune tolerance and the risk of solid cancers: findings from EPIC-Heidelberg. J. Natl. Cancer Inst. 107, djv224 (2015).
    • (2015) J. Natl. Cancer Inst. , vol.107 , pp. djv224
    • Barth, S.D.1
  • 31
    • 33846485153 scopus 로고    scopus 로고
    • Regulatory T cells prevent catastrophic autoimmunity throughout the lifespan of mice
    • Kim, J. M., Rasmussen, J. P. & Rudensky, A. Y. Regulatory T cells prevent catastrophic autoimmunity throughout the lifespan of mice. Nat. Immunol. 8, 191-197 (2007).
    • (2007) Nat. Immunol. , vol.8 , pp. 191-197
    • Kim, J.M.1    Rasmussen, J.P.2    Rudensky, A.Y.3
  • 32
    • 41549159660 scopus 로고    scopus 로고
    • Regulatory T cell-derived interleukin-10 limits inflammation at environmental interfaces
    • Rubtsov, Y. P. et al. Regulatory T cell-derived interleukin-10 limits inflammation at environmental interfaces. Immunity 28, 546-558 (2008).
    • (2008) Immunity , vol.28 , pp. 546-558
    • Rubtsov, Y.P.1
  • 33
    • 84923247518 scopus 로고    scopus 로고
    • Improved tagmentation-based whole-genome bisulfite sequencing for input DNA from less than 100 mammalian cells
    • Lu, H. et al. Improved tagmentation-based whole-genome bisulfite sequencing for input DNA from less than 100 mammalian cells. Epigenomics 7, 47-56 (2015).
    • (2015) Epigenomics , vol.7 , pp. 47-56
    • Lu, H.1
  • 34
    • 84884995734 scopus 로고    scopus 로고
    • Tagmentation-based whole-genome bisulfite sequencing
    • Wang, Q. et al. Tagmentation-based whole-genome bisulfite sequencing. Nat. Protoc. 8, 2022-2032 (2013).
    • (2013) Nat. Protoc. , vol.8 , pp. 2022-2032
    • Wang, Q.1
  • 35
    • 84903516439 scopus 로고    scopus 로고
    • Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing
    • Hovestadt, V. et al. Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. Nature 510, 537-541 (2014).
    • (2014) Nature , vol.510 , pp. 537-541
    • Hovestadt, V.1
  • 36
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 37
    • 84866853818 scopus 로고    scopus 로고
    • BSmooth: From whole genome bisulfite sequencing reads to differentially methylated regions
    • Hansen, K. D., Langmead, B. & Irizarry, R. A. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biol. 13, R83 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R83
    • Hansen, K.D.1    Langmead, B.2    Irizarry, R.A.3
  • 38
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. & Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 39
    • 84911374686 scopus 로고    scopus 로고
    • Circlize Implements and enhances circular visualization in R
    • Gu, Z., Gu, L., Eils, R., Schlesner, M. & Brors, B. circlize Implements and enhances circular visualization in R. Bioinformatics 30, 2811-2812 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2811-2812
    • Gu, Z.1    Gu, L.2    Eils, R.3    Schlesner, M.4    Brors, B.5
  • 40
    • 84976884426 scopus 로고    scopus 로고
    • JASPAR 2016: A major expansion and update of the open-access database of transcription factor binding profiles
    • Mathelier, A. et al. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 44, D1, D110-D115 (2016).
    • (2016) Nucleic Acids Res. , vol.44 , Issue.D1 , pp. D110-D115
    • Mathelier, A.1
  • 41
    • 33748191291 scopus 로고    scopus 로고
    • Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE
    • Foat, B. C., Morozov, A. V. & Bussemaker, H. J. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. Bioinformatics 22, e141-e149 (2006).
    • (2006) Bioinformatics , vol.22 , pp. e141-e149
    • Foat, B.C.1    Morozov, A.V.2    Bussemaker, H.J.3
  • 42
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 43
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1
  • 44
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq-a Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 45
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 46
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 47
    • 84883364264 scopus 로고    scopus 로고
    • Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
    • Anders, S. et al. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nat. Protoc. 8, 1765-1786 (2013).
    • (2013) Nat. Protoc. , vol.8 , pp. 1765-1786
    • Anders, S.1
  • 48
    • 84903147184 scopus 로고    scopus 로고
    • Methylation plotter: A web tool for dynamic visualization of DNA methylation data
    • Mallona, I., Díez-Villanueva, A. & Peinado, M. A. Methylation plotter: a web tool for dynamic visualization of DNA methylation data. Source Code Biol. Med. 9, 11 (2014).
    • (2014) Source Code Biol. Med. , vol.9 , pp. 11
    • Mallona, I.1    Díez-Villanueva, A.2    Peinado, M.A.3
  • 49
    • 85010931059 scopus 로고    scopus 로고
    • A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
    • Lun, A. T., McCarthy, D. J. & Marioni, J. C. A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor. F1000 Res. 5, 2122 (2016).
    • (2016) F1000 Res. , vol.5 , pp. 2122
    • Lun, A.T.1    McCarthy, D.J.2    Marioni, J.C.3


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