-
1
-
-
84875957863
-
U. S. Outpatient antibiotic prescribing, 2010
-
1:CAS:528:DC%2BC3sXmt1ygsrc%3D 23574140
-
Hicks, L. A., Taylor, T. H. Jr & Hunkler, R. J. U. S. outpatient antibiotic prescribing, 2010. N. Engl. J. Med. 368, 1461-1462 (2013).
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 1461-1462
-
-
Hicks, L.A.1
Taylor, T.H.2
Hunkler, R.J.3
-
2
-
-
83155192952
-
Antibiotic prescribing in ambulatory pediatrics in the United States
-
22065263
-
Hersh, A. L., Shapiro, D. J., Pavia, A. T. & Shah, S. S. Antibiotic prescribing in ambulatory pediatrics in the United States. Pediatrics 128, 1053-1061 (2011).
-
(2011)
Pediatrics
, vol.128
, pp. 1053-1061
-
-
Hersh, A.L.1
Shapiro, D.J.2
Pavia, A.T.3
Shah, S.S.4
-
3
-
-
84895172396
-
Recent trends in outpatient antibiotic use in children
-
24488744 3934343
-
Vaz, L. E. et al. Recent trends in outpatient antibiotic use in children. Pediatrics 133, 375-385 (2014).
-
(2014)
Pediatrics
, vol.133
, pp. 375-385
-
-
Vaz, L.E.1
-
4
-
-
84965002935
-
How colonization by microbiota in early life shapes the immune system
-
2016Sci.352.539G 1:CAS:528:DC%2BC28Xms1KisbY%3D 27126036 5050524
-
Gensollen, T., Iyer, S. S., Kasper, D. L. & Blumberg, R. S. How colonization by microbiota in early life shapes the immune system. Science 352, 539-544 (2016).
-
(2016)
Science
, vol.352
, pp. 539-544
-
-
Gensollen, T.1
Iyer, S.S.2
Kasper, D.L.3
Blumberg, R.S.4
-
5
-
-
84942874856
-
Early infancy microbial and metabolic alterations affect risk of childhood asthma
-
26424567
-
Arrieta, M. C. et al. Early infancy microbial and metabolic alterations affect risk of childhood asthma. Sci. Transl. Med. 7, 307ra152 (2015).
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 307ra152
-
-
Arrieta, M.C.1
-
6
-
-
78651252504
-
Antibiotic use and inflammatory bowel diseases in childhood
-
20966024
-
Hviid, A., Svanstrom, H. & Frisch, M. Antibiotic use and inflammatory bowel diseases in childhood. Gut. 60, 49-54 (2011).
-
(2011)
Gut
, vol.60
, pp. 49-54
-
-
Hviid, A.1
Svanstrom, H.2
Frisch, M.3
-
7
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
21103409 2982803
-
Ochman, H. et al. Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol. 8, e1000546 (2010).
-
(2010)
PLoS Biol.
, vol.8
, pp. e1000546
-
-
Ochman, H.1
-
8
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
1:CAS:528:DC%2BD1MXjvF2gtbk%3D 19343057 4095778
-
Round, J. L. & Mazmanian, S. K. The gut microbiota shapes intestinal immune responses during health and disease. Nat. Rev. Immunol. 9, 313-323 (2009).
-
(2009)
Nat. Rev. Immunol.
, vol.9
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
9
-
-
70449703996
-
What are the consequences of the disappearing human microbiota?
-
1:CAS:528:DC%2BD1MXhtlOrurfP 19898491
-
Blaser, M. J. & Falkow, S. What are the consequences of the disappearing human microbiota? Nat. Rev. Microbiol. 7, 887-894 (2009).
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 887-894
-
-
Blaser, M.J.1
Falkow, S.2
-
10
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
2012Natur.486.222Y 1:CAS:528:DC%2BC38Xos1emtLc%3D 22699611 3376388
-
Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature. 486, 222-227 (2012).
-
(2012)
Nature.
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
-
11
-
-
84984905711
-
Dynamics and stabilization of the human gut microbiome during the first year of life
-
1:CAS:528:DC%2BC2MXpt1Slsrw%3D 26308884
-
Backhed, F. et al. Dynamics and stabilization of the human gut microbiome during the first year of life. Cell Host Microbe 17, 852 (2015).
-
(2015)
Cell Host Microbe
, vol.17
, pp. 852
-
-
Backhed, F.1
-
12
-
-
84934775028
-
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
-
26123276 4491183
-
Nobel, Y. R. et al. Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment. Nat. Commun. 6, 7486 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 7486
-
-
Nobel, Y.R.1
-
13
-
-
84955480509
-
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
-
2016NatCo.710410K 1:CAS:528:DC%2BC28Xhtl2kurg%3D 26811868 4737757
-
Korpela, K. et al. Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children. Nat. Commun. 7, 10410 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 10410
-
-
Korpela, K.1
-
14
-
-
53649098280
-
Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits
-
2008Natur.455.804B 1:CAS:528:DC%2BD1cXht1WktLvJ 18724361 2663337
-
Brandl, K. et al. Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits. Nature 455, 804-807 (2008).
-
(2008)
Nature
, vol.455
, pp. 804-807
-
-
Brandl, K.1
-
15
-
-
84862777474
-
Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation
-
1:CAS:528:DC%2BC38XksVehsLg%3D 22447074 3321082
-
Hill, D. A. et al. Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation. Nat. Med. 18, 538-546 (2012).
-
(2012)
Nat. Med.
, vol.18
, pp. 538-546
-
-
Hill, D.A.1
-
16
-
-
84983479248
-
Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice
-
1:CAS:528:DC%2BC2sXkvFyrsbs%3D 27782139
-
Livanos A. E. et al. Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice. Nat. Microbiol. 1, 16140 (2016).
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16140
-
-
Livanos, A.1
-
17
-
-
84863718303
-
Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88
-
1:CAS:528:DC%2BC38Xht1Kks7vK 22115825
-
Larsson, E. et al. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut. 61, 1124-1131 (2012).
-
(2012)
Gut.
, vol.61
, pp. 1124-1131
-
-
Larsson, E.1
-
18
-
-
84896884079
-
Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression
-
2014PNAS.111.3074R 1:CAS:528:DC%2BC2cXjtVGrsLg%3D 24569806 3939878
-
Rogier, E. W. et al. Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression. Proc. Natl Acad. Sci. USA 111, 3074-3079 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 3074-3079
-
-
Rogier, E.W.1
-
19
-
-
84943387040
-
Macrolides promote CCL2-mediated macrophage recruitment and clearance of nasopharyngeal pneumococcal colonization in mice
-
25767216
-
Iwanaga, N. et al. Macrolides promote CCL2-mediated macrophage recruitment and clearance of nasopharyngeal pneumococcal colonization in mice. J. Infect. Dis. 212, 1150-1159 (2015).
-
(2015)
J. Infect. Dis.
, vol.212
, pp. 1150-1159
-
-
Iwanaga, N.1
-
20
-
-
84923341124
-
Azithromycin suppresses CD4+ T-cell activation by direct modulation of mTOR activity
-
1:CAS:528:DC%2BC2MXksVyhtrw%3D 25500904 4262884
-
Ratzinger, F. et al. Azithromycin suppresses CD4+ T-cell activation by direct modulation of mTOR activity. Sci. Rep. 4, 7438 (2014).
-
(2014)
Sci. Rep.
, vol.4
, pp. 7438
-
-
Ratzinger, F.1
-
21
-
-
84939570686
-
The bilateral responsiveness between intestinal microbes and IgA
-
1:CAS:528:DC%2BC2MXhtFWis7nL 26169256
-
Macpherson, A. J., Koller, Y. & McCoy, K. D. The bilateral responsiveness between intestinal microbes and IgA. Trends. Immunol. 36, 460-470 (2015).
-
(2015)
Trends. Immunol.
, vol.36
, pp. 460-470
-
-
Macpherson, A.J.1
Koller, Y.2
McCoy, K.D.3
-
22
-
-
84883648052
-
Alteration of intestinal microbiota in mice orally administered with salmon cartilage proteoglycan, a prophylactic agent
-
2013PLoSO.875008A 1:CAS:528:DC%2BC3sXhsVOrur%2FL 24040376 3767651
-
Asano, K., Yoshimura, S. & Nakane, A. Alteration of intestinal microbiota in mice orally administered with salmon cartilage proteoglycan, a prophylactic agent. PLoS ONE 8, e75008 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e75008
-
-
Asano, K.1
Yoshimura, S.2
Nakane, A.3
-
23
-
-
79957701773
-
Gammadelta intraepithelial lymphocytes are essential mediators of host-microbial homeostasis at the intestinal mucosal surface
-
2011PNAS.108.8743I 1:CAS:528:DC%2BC3MXntVGqu7w%3D 21555560 3102410
-
Ismail, A. S. et al. Gammadelta intraepithelial lymphocytes are essential mediators of host-microbial homeostasis at the intestinal mucosal surface. Proc. Natl Acad. Sci. USA 108, 8743-8748 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 8743-8748
-
-
Ismail, A.S.1
-
24
-
-
0022994131
-
Influence of antibiotics on intestinal mucin in healthy subjects
-
1:CAS:528:DyaL2sXhs1ymsLk%3D 3492375
-
Carlstedt-Duke, B. et al. Influence of antibiotics on intestinal mucin in healthy subjects. Eur. J. Clin. Microbiol. 5, 634-638 (1986).
-
(1986)
Eur. J. Clin. Microbiol.
, vol.5
, pp. 634-638
-
-
Carlstedt-Duke, B.1
-
25
-
-
84867908677
-
Th17 cells upregulate polymeric Ig receptor and intestinal IgA and contribute to intestinal homeostasis
-
1:CAS:528:DC%2BC38XhsFersb%2FM 22993206 3478497
-
Cao, A. T., Yao, S., Gong, B., Elson, C. O. & Cong, Y. Th17 cells upregulate polymeric Ig receptor and intestinal IgA and contribute to intestinal homeostasis. J. Immunol. 189, 4666-4673 (2012).
-
(2012)
J. Immunol.
, vol.189
, pp. 4666-4673
-
-
Cao, A.T.1
Yao, S.2
Gong, B.3
Elson, C.O.4
Cong, Y.5
-
26
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
1:CAS:528:DC%2BD1MXhsFKltL%2FL 19836068 2796826
-
Ivanov, I. I. et al. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139, 485-498 (2009).
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
-
27
-
-
84936972916
-
Azithromycin inhibits IL-1 secretion and non-canonical inflammasome activation
-
2015NatSR.512016G 26152605 4495566
-
Gualdoni, G. A. et al. Azithromycin inhibits IL-1 secretion and non-canonical inflammasome activation. Sci. Rep. 5, 12016 (2015).
-
(2015)
Sci. Rep.
, vol.5
, pp. 12016
-
-
Gualdoni, G.A.1
-
28
-
-
84947552418
-
Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks
-
1:CAS:528:DC%2BC28XmvFKjsrg%3D 25614621 5166700
-
Morgun, A. et al. Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks. Gut. 64, 1732-1743 (2015).
-
(2015)
Gut
, vol.64
, pp. 1732-1743
-
-
Morgun, A.1
-
29
-
-
84959083589
-
Akkermansia muciniphila and its role in regulating host functions
-
26875998
-
Derrien, M., Belzer, C. & de Vos, W. M. Akkermansia muciniphila and its role in regulating host functions. Microb. Pathog. 106, 171-181 (2017).
-
(2017)
Microb. Pathog.
, vol.106
, pp. 171-181
-
-
Derrien, M.1
Belzer, C.2
De Vos, W.M.3
-
30
-
-
85018672799
-
NLRP6 protects Il10-/- mice from colitis by limiting colonization of Akkermansia muciniphila
-
1:CAS:528:DC%2BC2sXmslSjsb0%3D 28445725 5528001
-
-/- mice from colitis by limiting colonization of Akkermansia muciniphila. Cell Rep. 19, 733-745 (2017).
-
(2017)
Cell Rep.
, vol.19
, pp. 733-745
-
-
Seregin, S.S.1
-
31
-
-
84883813272
-
Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice
-
2013PLoSO.874963G 1:CAS:528:DC%2BC3sXhsVyrsbjL 24040367 3769299
-
Ganesh, B. P., Klopfleisch, R., Loh, G. & Blaut, M. Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice. PLoS ONE 8, e74963 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e74963
-
-
Ganesh, B.P.1
Klopfleisch, R.2
Loh, G.3
Blaut, M.4
-
32
-
-
66549102207
-
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation
-
1:CAS:528:DC%2BD1MXmvFCnsrs%3D 19307217 2687343
-
Antonopoulos, D. A. et al. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect. Immun. 77, 2367-2375 (2009).
-
(2009)
Infect. Immun.
, vol.77
, pp. 2367-2375
-
-
Antonopoulos, D.A.1
-
33
-
-
84997541867
-
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals
-
27388460 4936053
-
Ormerod, K. L. et al. Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome 4, 36 (2016).
-
(2016)
Microbiome
, vol.4
, pp. 36
-
-
Ormerod, K.L.1
-
34
-
-
84907300008
-
Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease
-
1:CAS:528:DC%2BC2cXhsV2jtLfJ 25171403 4174347
-
Palm, N. W. et al. Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell 158, 1000-1010 (2014).
-
(2014)
Cell
, vol.158
, pp. 1000-1010
-
-
Palm, N.W.1
-
35
-
-
84941659588
-
Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A
-
1:CAS:528:DC%2BC2MXhsFShtLnO 26320660 4575282
-
Bunker, J. J. et al. Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A. Immunity 43, 541-553 (2015).
-
(2015)
Immunity
, vol.43
, pp. 541-553
-
-
Bunker, J.J.1
-
36
-
-
33747177087
-
Assembly of the human intestinal microbiota
-
16820245
-
Dethlefsen, L., Eckburg, P. B., Bik, E. M. & Relman, D. A. Assembly of the human intestinal microbiota. Trends. Ecol. Evol. 21, 517-523 (2006).
-
(2006)
Trends. Ecol. Evol.
, vol.21
, pp. 517-523
-
-
Dethlefsen, L.1
Eckburg, P.B.2
Bik, E.M.3
Relman, D.A.4
-
37
-
-
84910057313
-
Host lifestyle affects human microbiota on daily timescales
-
25146375 4405912
-
David, L. A. et al. Host lifestyle affects human microbiota on daily timescales. Genome Biol. 15, R89 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R89
-
-
David, L.A.1
-
38
-
-
84907563983
-
Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences
-
1:CAS:528:DC%2BC2cXhtlymtLjP 25126780 4134513
-
Cox, L. M. et al. Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences. Cell 158, 705-721 (2014).
-
(2014)
Cell
, vol.158
, pp. 705-721
-
-
Cox, L.M.1
-
39
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
1:CAS:528:DC%2BC38Xhs1OisLbO 23133377 3486913
-
Lawley, T. D. et al. Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog. 8, e1002995 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002995
-
-
Lawley, T.D.1
-
40
-
-
84905276988
-
Individual diet has sex-dependent effects on vertebrate gut microbiota
-
1:CAS:528:DC%2BC2MXksVers70%3D 25072318 4279269
-
Bolnick, D. I. et al. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat. Commun. 5, 4500 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 4500
-
-
Bolnick, D.I.1
-
41
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
2013Sci.339.1084M 1:CAS:528:DC%2BC3sXjtVGjsbk%3D 23328391
-
Markle, J. G. et al. Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339, 1084-1088 (2013).
-
(2013)
Science
, vol.339
, pp. 1084-1088
-
-
Markle, J.G.1
-
42
-
-
84882610339
-
Gender bias in autoimmunity is influenced by microbiota
-
1:CAS:528:DC%2BC3sXhtlCnt7nP 23973225
-
Yurkovetskiy, L. et al. Gender bias in autoimmunity is influenced by microbiota. Immunity 39, 400-412 (2013).
-
(2013)
Immunity
, vol.39
, pp. 400-412
-
-
Yurkovetskiy, L.1
-
43
-
-
77954051526
-
Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses
-
2010Sci.328.1705H 1:CAS:528:DC%2BC3cXnvVektbc%3D 20576892 3923373
-
Hapfelmeier, S. et al. Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science 328, 1705-1709 (2010).
-
(2010)
Science
, vol.328
, pp. 1705-1709
-
-
Hapfelmeier, S.1
-
44
-
-
77952884274
-
How antibiotics kill bacteria: From targets to networks
-
1:CAS:528:DC%2BC3cXlsFWit74%3D 20440275 2896384
-
Kohanski, M. A., Dwyer, D. J. & Collins, J. J. How antibiotics kill bacteria: from targets to networks. Nat. Rev. Microbiol. 8, 423-435 (2010).
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 423-435
-
-
Kohanski, M.A.1
Dwyer, D.J.2
Collins, J.J.3
-
45
-
-
84975064151
-
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
-
Yassour, M. et al. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Sci. Transl. Med. 8, 343ra381 (2016).
-
(2016)
Sci. Transl. Med.
, vol.8
, pp. 343ra381
-
-
Yassour, M.1
-
46
-
-
84874732747
-
Perinatal antibiotic treatment affects murine microbiota, immune responses and allergic asthma
-
23333861 3595077
-
Russell, S. L. et al. Perinatal antibiotic treatment affects murine microbiota, immune responses and allergic asthma. Gut Microbes 4, 158-164 (2013).
-
(2013)
Gut Microbes
, vol.4
, pp. 158-164
-
-
Russell, S.L.1
-
47
-
-
84920453067
-
Perinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases
-
1:CAS:528:DC%2BC2cXhtlOrtbvK 25145536
-
Russell, S. L. et al. Perinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases. J. Allergy Clin. Immunol. 135, 100-109 (2015).
-
(2015)
J. Allergy Clin. Immunol.
, vol.135
, pp. 100-109
-
-
Russell, S.L.1
-
48
-
-
85029382066
-
Disruption of the gut microbiota by antibiotics exposure during early life promotes spontaneous Th2 responses and loss of tolerance to dietary antigens
-
Gustafsson, J. K., McDonald, K. & Newberry, R. Disruption of the gut microbiota by antibiotics exposure during early life promotes spontaneous Th2 responses and loss of tolerance to dietary antigens. J. Immunol. 196, 191-120 (2016).
-
(2016)
J. Immunol.
, vol.196
, pp. 191
-
-
Gustafsson, J.K.1
McDonald, K.2
Newberry, R.3
-
49
-
-
84920404296
-
How informative is the mouse for human gut microbiota research?
-
1:CAS:528:DC%2BC2MXosFSiu7k%3D
-
Nguyen, T. L. A., Vieira-Silva, S., Liston, A. & Raes, J. How informative is the mouse for human gut microbiota research? Dis. Models Mech. 8, 1-16 (2015).
-
(2015)
Dis. Models Mech.
, vol.8
, pp. 1-16
-
-
Nguyen, T.L.A.1
Vieira-Silva, S.2
Liston, A.3
Raes, J.4
-
50
-
-
0001862166
-
Anaerobic infections in humans: An overview
-
1:STN:280:DC%2BD28vmtlyhsg%3D%3D 16887500
-
Finegold, S. M. Anaerobic infections in humans: an overview. Anaerobe 1, 3-9 (1995).
-
(1995)
Anaerobe
, vol.1
, pp. 3-9
-
-
Finegold, S.M.1
-
52
-
-
0029134735
-
Pharmacokinetics of azithromycin in pediatric patients with acute otitis media
-
1:CAS:528:DyaK2MXnt1ygsLw%3D 7486938 162845
-
Nahata, M. C., Koranyi, K. I., Luke, D. R. & Foulds, G. Pharmacokinetics of azithromycin in pediatric patients with acute otitis media. Antimicrob. Agents Chemother. 39, 1875-1877 (1995).
-
(1995)
Antimicrob. Agents Chemother.
, vol.39
, pp. 1875-1877
-
-
Nahata, M.C.1
Koranyi, K.I.2
Luke, D.R.3
Foulds, G.4
-
54
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
21702898 3218848
-
Segata, N. et al. Metagenomic biomarker discovery and explanation. Genome Biol. 12, R60 (2011).
-
(2011)
Genome Biol.
, vol.12
, pp. R60
-
-
Segata, N.1
-
55
-
-
85015975393
-
Normalization and microbial differential abundance strategies depend upon data characteristics
-
28253908 5335496
-
Weiss, S. et al. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5, 27 (2017).
-
(2017)
Microbiome
, vol.5
, pp. 27
-
-
Weiss, S.1
-
56
-
-
84901363655
-
Waste not, want not: Why rarefying microbiome data is inadmissible
-
2014PLSCB.10E3531M 24699258 3974642
-
McMurdie, P. J. & Holmes, S. Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput. Biol. 10, e1003531 (2014).
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003531
-
-
McMurdie, P.J.1
Holmes, S.2
-
57
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
1:CAS:528:DC%2BC38XhvV2gsbnF 23104886
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
58
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
25516281 4302049
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
59
-
-
77952243141
-
QIIME allows analysis of high- throughput community sequencing data
-
1:CAS:528:DC%2BC3cXksFalurg%3D
-
Caporaso, J., Kuczynski, J. & Stombaugh, J. QIIME allows analysis of high- throughput community sequencing data. Nature 7, 335-336 (2010).
-
(2010)
Nature
, vol.7
, pp. 335-336
-
-
Caporaso, J.1
Kuczynski, J.2
Stombaugh, J.3
-
60
-
-
78751575501
-
UniFrac: An effective distance metric for microbial community comparison
-
20827291
-
Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J. & Knight, R. UniFrac: an effective distance metric for microbial community comparison. ISME. J. 5, 169-172 (2011).
-
(2011)
ISME. J.
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
61
-
-
84876427223
-
Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
-
2013PLoSO.861217M 1:CAS:528:DC%2BC3sXntVWht7w%3D 23630581 3632530
-
McMurdie, P. J. & Holmes, S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8, e61217 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e61217
-
-
McMurdie, P.J.1
Holmes, S.2
-
62
-
-
40749084834
-
Enteric salmonellosis disrupts the microbial ecology of the murine gastrointestinal tract
-
1:CAS:528:DC%2BD1cXivFarsrc%3D 18160481
-
Barman, M. et al. Enteric salmonellosis disrupts the microbial ecology of the murine gastrointestinal tract. Infect. Immun. 76, 907-915 (2008).
-
(2008)
Infect. Immun.
, vol.76
, pp. 907-915
-
-
Barman, M.1
-
63
-
-
84930608352
-
Sparse and compositionally robust inference of microbial ecological networks
-
25950956 4423992
-
Kurtz, Z. D. et al. Sparse and compositionally robust inference of microbial ecological networks. PLoS. Comput. Biol. 11, e1004226 (2015).
-
(2015)
PLoS. Comput. Biol.
, vol.11
, pp. e1004226
-
-
Kurtz, Z.D.1
-
64
-
-
85162067025
-
Stability approach to regularization selection (StARS) for high dimensional graphical models
-
25152607 4138724
-
Liu, H., Roeder, K. & Wasserman, L. Stability approach to regularization selection (StARS) for high dimensional graphical models. Adv. Neural Inf. Process. Syst. 24, 1432-1440 (2010).
-
(2010)
Adv. Neural Inf. Process. Syst.
, vol.24
, pp. 1432-1440
-
-
Liu, H.1
Roeder, K.2
Wasserman, L.3
-
65
-
-
84964240579
-
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
-
27124954 4847194
-
Mahana, D. et al. Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet. Genome Med. 8, 48 (2016).
-
(2016)
Genome Med.
, vol.8
, pp. 48
-
-
Mahana, D.1
-
66
-
-
84897401644
-
Revealing the hidden language of complex networks
-
24686408 3971399
-
Yaveroglu, O. N. et al. Revealing the hidden language of complex networks. Sci. Rep. 4, 4547 (2014).
-
(2014)
Sci Rep
, vol.4
, pp. 4547
-
-
Yaveroglu, O.N.1
-
67
-
-
0034721164
-
Error and attack tolerance of complex networks
-
2000Natur.406.378A 1:CAS:528:DC%2BD3cXlslKgtLk%3D 10935628
-
Albert, R., Jeong, H. & Barabasi, A. L. Error and attack tolerance of complex networks. Nature 406, 378-382 (2000).
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
68
-
-
78649349986
-
Natural connectivity of complex networks
-
2010ChPhL.27g8902W
-
Jun, W., Barahona, M., Yue-Jin, T. & Hong-Zhong, D. Natural connectivity of complex networks. Chinese Phys. Lett. 27, 078902 (2010).
-
(2010)
Chinese Phys. Lett.
, vol.27
, pp. 078902
-
-
Jun, W.1
Barahona, M.2
Yue-Jin, T.3
Hong-Zhong, D.4
-
69
-
-
84963860997
-
Helminth infection promotes colonization resistance via type 2 immunity
-
2016Sci.352.608R 1:CAS:528:DC%2BC28Xms1Kisb8%3D 27080105 4905769
-
Ramanan, D. et al. Helminth infection promotes colonization resistance via type 2 immunity. Science 352, 608-612 (2016).
-
(2016)
Science
, vol.352
, pp. 608-612
-
-
Ramanan, D.1
-
70
-
-
10144260674
-
PLS generalised linear regression
-
2133599 05374090
-
Bastien, P., Vinzi, V. E. & Tenenhaus, M. PLS generalised linear regression. Comput. Stat. Data Anal. 48, 17-46 (2005).
-
(2005)
Comput. Stat. Data Anal.
, vol.48
, pp. 17-46
-
-
Bastien, P.1
Vinzi, V.E.2
Tenenhaus, M.3
|