-
1
-
-
84880507665
-
Mutational heterogeneity in cancer and the search for new cancer-Associated genes
-
Lawrence, M. S. et al. Mutational heterogeneity in cancer and the search for new cancer-Associated genes. Nature 499, 214-218 (2013).
-
(2013)
Nature
, vol.499
, pp. 214-218
-
-
Lawrence, M.S.1
-
2
-
-
85027289401
-
Genetic basis for clinical response to ctla-4 blockade in melanoma
-
Chan, T. A., Wolchok, J. D. & Snyder, A. Genetic basis for clinical response to CTLA-4 blockade in melanoma. N. Engl. J. Med. 373, 1984 (2015).
-
(2015)
N. Engl. J. Med
, vol.373
, pp. 1984
-
-
Chan, T.A.1
Wolchok, J.D.2
Snyder, A.3
-
3
-
-
84943516465
-
Genomic correlates of response to ctla-4 blockade in metastatic melanoma
-
Van Allen, E. M. et al. Genomic correlates of response to CTLA-4 blockade in metastatic melanoma. Science 350, 207-211 (2015).
-
(2015)
Science
, vol.350
, pp. 207-211
-
-
Van Allen, E.M.1
-
4
-
-
84961221351
-
Genomic and transcriptomic features of response to anti-pd-1 therapy in metastatic melanoma
-
Hugo, W. et al. Genomic and transcriptomic features of response to anti-PD-1 therapy in metastatic melanoma. Cell 165, 35-44 (2016).
-
(2016)
Cell
, vol.165
, pp. 35-44
-
-
Hugo, W.1
-
5
-
-
84928761118
-
Cancer immunology mutational landscape determines sensitivity to pd-1 blockade in non-small cell lung cancer
-
Rizvi, N. A. et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348, 124-128 (2015).
-
(2015)
Science
, vol.348
, pp. 124-128
-
-
Rizvi, N.A.1
-
6
-
-
84949730499
-
Immunogenicity of somatic mutations in human gastrointestinal cancers
-
Tran, E. et al. Immunogenicity of somatic mutations in human gastrointestinal cancers. Science 350, 1387-1390 (2015).
-
(2015)
Science
, vol.350
, pp. 1387-1390
-
-
Tran, E.1
-
7
-
-
85026265866
-
Mismatch-repair deficiency predicts response of solid tumors to pd-1 blockade
-
Le, D. T. et al. Mismatch-repair deficiency predicts response of solid tumors to PD-1 blockade. Science aan6733 (2017).
-
(2017)
Science Aan
, vol.6733
-
-
Le, D.T.1
-
8
-
-
0029670776
-
Loss of functional ? 2-microglobulin in metastatic melanomas from five patients receiving immunotherapy
-
Restifo, N. P. et al. Loss of functional ? 2-microglobulin in metastatic melanomas from five patients receiving immunotherapy. J. Natl Cancer Inst. 88, 100-108 (1996).
-
(1996)
J. Natl Cancer Inst
, vol.88
, pp. 100-108
-
-
Restifo, N.P.1
-
9
-
-
84983216790
-
Mutations associated with acquired resistance to pd-1 blockade in melanoma
-
Zaretsky, J. M. et al. Mutations associated with acquired resistance to PD-1 blockade in melanoma. N. Engl. J. Med. 375, 819-829 (2016).
-
(2016)
N. Engl. J. Med
, vol.375
, pp. 819-829
-
-
Zaretsky, J.M.1
-
10
-
-
84947471999
-
Identification and characterization of essential genes in the human genome
-
Wang, T. et al. Identification and characterization of essential genes in the human genome. Science 350, 1096-1101 (2015).
-
(2015)
Science
, vol.350
, pp. 1096-1101
-
-
Wang, T.1
-
11
-
-
84949233942
-
High-resolution crispr screens reveal fitness genes and genotype-specific cancer liabilities
-
Hart, T. et al. High-resolution CRISPR screens reveal fitness genes and genotype-specific cancer liabilities. Cell 163, 1515-1526 (2015).
-
(2015)
Cell
, vol.163
, pp. 1515-1526
-
-
Hart, T.1
-
12
-
-
84892765883
-
Genome-scale crispr-cas9 knockout screening in human cells
-
Shalem, O. et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343, 84-87 (2014).
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
-
13
-
-
84892749369
-
Genetic screens in human cells using the crispr-cas9 system
-
Wang, T., Wei, J. J., Sabatini, D. M. & Lander, E. S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80-84 (2014).
-
(2014)
Science
, vol.343
, pp. 80-84
-
-
Wang, T.1
Wei, J.J.2
Sabatini, D.M.3
Lander, E.S.4
-
14
-
-
84925008880
-
Genome-wide crispr screen in a mouse model of tumor growth and metastasis
-
Chen, S. et al. Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis. Cell 160, 1246-1260 (2015).
-
(2015)
Cell
, vol.160
, pp. 1246-1260
-
-
Chen, S.1
-
15
-
-
84920962202
-
Molecular and genetic properties of tumors associated with local immune cytolytic activity
-
Rooney, M. S., Shukla, S. A., Wu, C. J., Getz, G. & Hacohen, N. Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160, 48-61 (2015).
-
(2015)
Cell
, vol.160
, pp. 48-61
-
-
Rooney, M.S.1
Shukla, S.A.2
Wu, C.J.3
Getz, G.4
Hacohen, N.5
-
16
-
-
84907284200
-
Anti-ctla-4 therapy broadens the melanoma-reactive cd8+ t cell response
-
Kvistborg, P. et al. Anti-CTLA-4 therapy broadens the melanoma-reactive CD8+ T cell response. Sci. Transl. Med. 6, 254ra128 (2014).
-
(2014)
Sci. Transl. Med
, vol.6
, pp. 254ra128
-
-
Kvistborg, P.1
-
17
-
-
44449128698
-
Single and dual amino acid substitutions in tcr cdrs can enhance antigen-specific t cell functions
-
Robbins, P. F. et al. Single and dual amino acid substitutions in TCR CDRs can enhance antigen-specific T cell functions. J. Immunol. 180, 6116-6131 (2008).
-
(2008)
J. Immunol
, vol.180
, pp. 6116-6131
-
-
Robbins, P.F.1
-
18
-
-
33750324618
-
Gene transfer of tumor-reactive tcr confers both high avidity and tumor reactivity to nonreactive peripheral blood mononuclear cells and tumor-infiltrating lymphocytes
-
Johnson, L. A. et al. Gene transfer of tumor-reactive TCR confers both high avidity and tumor reactivity to nonreactive peripheral blood mononuclear cells and tumor-infiltrating lymphocytes. J. Immunol. 177, 6548-6559 (2006).
-
(2006)
J. Immunol
, vol.177
, pp. 6548-6559
-
-
Johnson, L.A.1
-
19
-
-
84928912377
-
A pilot trial using lymphocytes genetically engineered with an ny-eso-1-reactive t-cell receptor: Long-term follow-up and correlates with response
-
Robbins, P. F. et al. A pilot trial using lymphocytes genetically engineered with an NY-ESO-1-reactive T-cell receptor: long-term follow-up and correlates with response. Clin. Cancer Res. 21, 1019-1027 (2015).
-
(2015)
Clin. Cancer Res
, vol.21
, pp. 1019-1027
-
-
Robbins, P.F.1
-
20
-
-
2342485077
-
Bystander elimination of antigen loss variants in established tumors
-
Spiotto, M. T., Rowley, D. A. & Schreiber, H. Bystander elimination of antigen loss variants in established tumors. Nat. Med. 10, 294-298 (2004).
-
(2004)
Nat. Med
, vol.10
, pp. 294-298
-
-
Spiotto, M.T.1
Rowley, D.A.2
Schreiber, H.3
-
21
-
-
84905262730
-
Improved vectors and genome-wide libraries for crispr screening
-
Sanjana, N. E., Shalem, O. & Zhang, F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783-784 (2014).
-
(2014)
Nat. Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
22
-
-
58149521944
-
Highly parallel identification of essential genes in cancer cells
-
Luo, B. et al. Highly parallel identification of essential genes in cancer cells. Proc. Natl Acad. Sci. USA 105, 20380-20385 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20380-20385
-
-
Luo, B.1
-
23
-
-
33846255059
-
Identification of genes selectively regulated by ifns in endothelial cells
-
Indraccolo, S. et al. Identification of genes selectively regulated by IFNs in endothelial cells. J. Immunol. 178, 1122-1135 (2007).
-
(2007)
J. Immunol
, vol.178
, pp. 1122-1135
-
-
Indraccolo, S.1
-
24
-
-
33745964366
-
Differential gene induction by type i and type II interferons and their combination
-
Sanda, C. et al. Differential gene induction by type I and type II interferons and their combination. J. Interferon Cytokine Res. 26, 462-472 (2006).
-
(2006)
J. Interferon Cytokine Res
, vol.26
, pp. 462-472
-
-
Sanda, C.1
-
25
-
-
33751537126
-
TNF induces distinct gene expression programs in microvascular and macrovascular human endothelial cells
-
Viemann, D. et al. TNF induces distinct gene expression programs in microvascular and macrovascular human endothelial cells. J. Leukoc. Biol. 80, 174-185 (2006).
-
(2006)
J. Leukoc. Biol
, vol.80
, pp. 174-185
-
-
Viemann, D.1
-
26
-
-
84924407460
-
A comprehensive transcriptional portrait of human cancer cell lines
-
Klijn, C. et al. A comprehensive transcriptional portrait of human cancer cell lines. Nat. Biotechnol. 33, 306-312 (2015).
-
(2015)
Nat. Biotechnol
, vol.33
, pp. 306-312
-
-
Klijn, C.1
-
27
-
-
77955660663
-
Diverse somatic mutation patterns and pathway alterations in human cancers
-
Kan, Z. et al. Diverse somatic mutation patterns and pathway alterations in human cancers. Nature 466, 869-873 (2010).
-
(2010)
Nature
, vol.466
, pp. 869-873
-
-
Kan, Z.1
-
28
-
-
85014681380
-
Integrated molecular analysis of tumor biopsies on sequential ctla-4 and pd-1 blockade reveals markers of response and resistance
-
Roh, W. et al. Integrated molecular analysis of tumor biopsies on sequential CTLA-4 and PD-1 blockade reveals markers of response and resistance. Sci. Transl. Med. 9, aah3560 (2017).
-
(2017)
Sci. Transl. Med
, vol.9
, pp. aah3560
-
-
Roh, W.1
-
29
-
-
85016124258
-
Somatic mutations and neoepitope homology in melanomas treated with ctla-4 blockade
-
Nathanson, T. et al. Somatic mutations and neoepitope homology in melanomas treated with CTLA-4 blockade. Cancer Immunol. Res. 5, 84-91 (2017).
-
(2017)
Cancer Immunol. Res
, vol.5
, pp. 84-91
-
-
Nathanson, T.1
-
30
-
-
84884180829
-
The apelin receptor apj: Journey from an orphan to a multifaceted regulator of homeostasis
-
O'Carroll, A.-M., Lolait, S. J., Harris, L. E. & Pope, G. R. The apelin receptor APJ: journey from an orphan to a multifaceted regulator of homeostasis. J. Endocrinol. 219, R13-R35 (2013).
-
(2013)
J. Endocrinol
, vol.219
, pp. R13-R35
-
-
O'Carroll, A.-M.1
Lolait, S.J.2
Harris, L.E.3
Pope, G.R.4
-
31
-
-
33644873184
-
Biogrid: A general repository for interaction datasets
-
Stark, C. et al. BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 34, D535-D539 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D535-D539
-
-
Stark, C.1
-
32
-
-
33750321707
-
Interferons immunity and cancer immunoediting
-
Dunn, G. P., Koebel, C. M. & Schreiber, R. D. Interferons, immunity and cancer immunoediting. Nat. Rev. Immunol. 6, 836-848 (2006).
-
(2006)
Nat. Rev. Immunol
, vol.6
, pp. 836-848
-
-
Dunn, G.P.1
Koebel, C.M.2
Schreiber, R.D.3
-
33
-
-
0041419656
-
Tumor regression and autoimmunity after reversal of a functionally tolerant state of self-reactive cd8+ t cells
-
Overwijk, W. W. et al. Tumor regression and autoimmunity after reversal of a functionally tolerant state of self-reactive CD8+ T cells. J. Exp. Med. 198, 569-580 (2003).
-
(2003)
J. Exp. Med
, vol.198
, pp. 569-580
-
-
Overwijk, W.W.1
-
34
-
-
84877355904
-
Low dose decitabine treatment induces cd80 expression in cancer cells and stimulates tumor specific cytotoxic t lymphocyte responses
-
Wang, L.-X. et al. Low dose decitabine treatment induces CD80 expression in cancer cells and stimulates tumor specific cytotoxic T lymphocyte responses. PLoS One 8, e62924 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e62924
-
-
Wang, L.-X.1
-
35
-
-
84890130945
-
Alterations of immune response of non-small cell lung cancer with azacytidine
-
Wrangle, J. et al. Alterations of immune response of non-small cell lung cancer with Azacytidine. Oncotarget 4, 2067-2079 (2013).
-
(2013)
Oncotarget
, vol.4
, pp. 2067-2079
-
-
Wrangle, J.1
-
36
-
-
0029019246
-
Direct stimulation of jak/stat pathway by the angiotensin II at1 receptor
-
Marrero, M. B. et al. Direct stimulation of Jak/STAT pathway by the angiotensin II AT1 receptor. Nature 375, 247-250 (1995).
-
(1995)
Nature
, vol.375
, pp. 247-250
-
-
Marrero, M.B.1
-
37
-
-
84863719408
-
The apelin/apj system induces maturation of the tumor vasculature and improves the efficiency of immune therapy
-
Kidoya, H. et al. The apelin/APJ system induces maturation of the tumor vasculature and improves the efficiency of immune therapy. Oncogene 31, 3254-3264 (2012).
-
(2012)
Oncogene
, vol.31
, pp. 3254-3264
-
-
Kidoya, H.1
-
38
-
-
85018417861
-
Tumour ischaemia by interferon-? Resembles physiological blood vessel regression
-
Kammertoens, T. et al. Tumour ischaemia by interferon-? resembles physiological blood vessel regression. Nature 545, 98-102 (2017).
-
(2017)
Nature
, vol.545
, pp. 98-102
-
-
Kammertoens, T.1
-
39
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17, 10-12 (2011).
-
(2011)
EMBnet.Journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
40
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
41
-
-
84962162280
-
Tcga2stat simple tcga data access for integrated statistical analysis in r
-
Wan, Y.-W., Allen, G. I. & Liu, Z. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. Bioinformatics 32, 952-954 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 952-954
-
-
Wan, Y.-W.1
Allen, G.I.2
Liu, Z.3
-
42
-
-
84875740314
-
Integrative analysis of complex cancer genomics and clinical profiles using the cbioportal
-
Gao, J. et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal. 6, pl1 (2013).
-
(2013)
Sci. Signal
, vol.6
, pp. l1
-
-
Gao, J.1
-
43
-
-
84866002291
-
The cbio cancer genomics portal: An open platform for exploring multidimensional cancer genomics data
-
Cerami, E. et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2, 401-404 (2012).
-
(2012)
Cancer Discov
, vol.2
, pp. 401-404
-
-
Cerami, E.1
-
44
-
-
84905049901
-
Trimmomatic a flexible trimmer for illumina sequence data
-
Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
45
-
-
84859210032
-
Fast gapped-read alignment with bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
46
-
-
84880276438
-
Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive t cells
-
Robbins, P. F. et al. Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells. Nat. Med. 19, 747-752 (2013).
-
(2013)
Nat. Med
, vol.19
, pp. 747-752
-
-
Robbins, P.F.1
-
47
-
-
84876996918
-
Tophat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol
, vol.14
, pp. R36
-
-
Kim, D.1
-
48
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with tophat and cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protocols 7, 562-578 (2012).
-
(2012)
Nat. Protocols
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
49
-
-
84863334860
-
Melanoma induction by ultraviolet a but not ultraviolet b radiation requires melanin pigment
-
Noonan, F. P. et al. Melanoma induction by ultraviolet A but not ultraviolet B radiation requires melanin pigment. Nat. Commun. 3, 884 (2012).
-
(2012)
Nat. Commun
, vol.3
, pp. 884
-
-
Noonan, F.P.1
|