-
1
-
-
84867166640
-
Carbapenemases in Klebsiella pneumoniae and other Enterobacteriaceae: An evolving crisis of global dimensions
-
Tzouvelekis LS, Markogiannakis A, Psichogiou M, Tassios PT, Daikos GL. 2012. Carbapenemases in Klebsiella pneumoniae and other Enterobacteriaceae: an evolving crisis of global dimensions. Clin Microbiol Rev 25:682–707. https://doi.org/10.1128/CMR.05035-11.
-
(2012)
Clin Microbiol Rev
, vol.25
, pp. 682-707
-
-
Tzouvelekis, L.S.1
Markogiannakis, A.2
Psichogiou, M.3
Tassios, P.T.4
Daikos, G.L.5
-
2
-
-
0022374379
-
Pseudomonas aeruginosa: Clinical manifestations and management
-
Gould IM, Wise R. 1985. Pseudomonas aeruginosa: clinical manifestations and management. Lancet ii:1224 –1227.
-
(1985)
Lancet
, vol.2
, pp. 1224-1227
-
-
Gould, I.M.1
Wise, R.2
-
3
-
-
0141453241
-
Pseudomonas aeruginosa bacteremia: Risk factors for mortality and influence of delayed receipt of effective antimicrobial therapy on clinical outcome
-
Kang C-I, Kim S-H, Kim H-B, Park S-W, Choe Y-J, Oh M-D, Kim E-C, Choe K-W. 2003. Pseudomonas aeruginosa bacteremia: risk factors for mortality and influence of delayed receipt of effective antimicrobial therapy on clinical outcome. Clin Infect Dis 37:745–751. https://doi.org/10.1086/377200.
-
(2003)
Clin Infect Dis
, vol.37
, pp. 745-751
-
-
Kang, C.-I.1
Kim, S.-H.2
Kim, H.-B.3
Park, S.-W.4
Choe, Y.-J.5
Oh, M.-D.6
Kim, E.-C.7
Choe, K.-W.8
-
4
-
-
80053563514
-
Multidrug-resistant Pseudomonas aeruginosa bloodstream infections: Risk factors and mortality
-
Tumbarello M, Repetto E, Trecarichi EM, Bernardini C, De Pascale G, Parisini A, Rossi M, Molinari MP, Spanu T, Viscoli C, Cauda R, Bassetti M. 2011. Multidrug-resistant Pseudomonas aeruginosa bloodstream infections: risk factors and mortality. Epidemiol Infect 139:1740–1749. https://doi.org/10.1017/S0950268810003055.
-
(2011)
Epidemiol Infect
, vol.139
, pp. 1740-1749
-
-
Tumbarello, M.1
Repetto, E.2
Trecarichi, E.M.3
Bernardini, C.4
De Pascale, G.5
Parisini, A.6
Rossi, M.7
Molinari, M.P.8
Spanu, T.9
Viscoli, C.10
Cauda, R.11
Bassetti, M.12
-
5
-
-
84992712492
-
Ten years with colistin: A retrospective case series
-
June
-
Katz DE, Marchaim D, Assous MV, Yinnon A, Wiener-Well Y, Ben-Chetrit E. 13 June 2016. Ten years with colistin: a retrospective case series. Int J Clin Pract https://doi.org/10.1111/ijcp.12830.
-
(2016)
Int J Clin Pract
-
-
Katz, D.E.1
Marchaim, D.2
Assous, M.V.3
Yinnon, A.4
Wiener-Well, Y.5
Ben-Chetrit, E.6
-
6
-
-
0017620773
-
Polymyxin and related peptide antibiotics
-
Storm DR, Rosenthal KS, Swanson PE. 1977. Polymyxin and related peptide antibiotics. Annu Rev Biochem 46:723–763. https://doi.org/10.1146/annurev.bi.46.070177.003451.
-
(1977)
Annu Rev Biochem
, vol.46
, pp. 723-763
-
-
Storm, D.R.1
Rosenthal, K.S.2
Swanson, P.E.3
-
7
-
-
84939180144
-
Prevalence and risk factors associated with colonization and infection of extensively drug-resistant Pseudomonas aeruginosa: A systematic review
-
Buhl M, Peter S, Willmann M. 2015. Prevalence and risk factors associated with colonization and infection of extensively drug-resistant Pseudomonas aeruginosa: a systematic review. Expert Rev Anti Infect Ther 13: 1159 –1170. https://doi.org/10.1586/14787210.2015.1064310.
-
(2015)
Expert Rev Anti Infect Ther
, vol.13
, pp. 1159-1170
-
-
Buhl, M.1
Peter, S.2
Willmann, M.3
-
8
-
-
84965021023
-
Colistin use in patients with reduced kidney function
-
Fiaccadori E, Antonucci E, Morabito S, d’ Avolio A, Maggiore U, Regolisti G. 2016. Colistin use in patients with reduced kidney function. Am J Kidney Dis 68:296–306. https://doi.org/10.1053/j.ajkd.2016.03.421.
-
(2016)
Am J Kidney Dis
, vol.68
, pp. 296-306
-
-
Fiaccadori, E.1
Antonucci, E.2
Morabito, S.3
D’ Avolio, A.4
Maggiore, U.5
Regolisti, G.6
-
9
-
-
84957433508
-
Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: A microbiological and molecular biological study
-
Liu Y-Y, Wang Y, Walsh TR, Yi L-X, Zhang R, Spencer J, Doi Y, Tian G, Dong B, Huang X, Yu L-F, Gu D, Ren H, Chen X, Lv L, He D, Zhou H, Liang Z, Liu J-H, Shen J. 2016. Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect Dis 16:161–168. https://doi.org/10.1016/S1473-3099(15)00424-7.
-
(2016)
Lancet Infect Dis
, vol.16
, pp. 161-168
-
-
Liu, Y.-Y.1
Wang, Y.2
Walsh, T.R.3
Yi, L.-X.4
Zhang, R.5
Spencer, J.6
Doi, Y.7
Tian, G.8
Dong, B.9
Huang, X.10
Yu, L.-F.11
Gu, D.12
Ren, H.13
Chen, X.14
Lv, L.15
He, D.16
Zhou, H.17
Liang, Z.18
Liu, J.-H.19
Shen, J.20
more..
-
10
-
-
84959106109
-
Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid
-
Malhotra-Kumar S, Xavier BB, Das AJ, Lammens C, Butaye P, Goossens H. 2016. Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid. Lancet Infect Dis 16:283–284. https://doi.org/10.1016/S1473-3099(16)00012-8.
-
(2016)
Lancet Infect Dis
, vol.16
, pp. 283-284
-
-
Malhotra-Kumar, S.1
Xavier, B.B.2
Das, A.J.3
Lammens, C.4
Butaye, P.5
Goossens, H.6
-
11
-
-
84967113379
-
Evolved resistance to colistin and its loss due to genetic reversion in Pseudomonas aeruginosa
-
Lee J-Y, Park YK, Chung ES, Na IY, Ko KS. 2016. Evolved resistance to colistin and its loss due to genetic reversion in Pseudomonas aeruginosa. Sci Rep 6:25543. https://doi.org/10.1038/srep25543.
-
(2016)
Sci Rep
, vol.6
, pp. 25543
-
-
Lee, J.-Y.1
Park, Y.K.2
Chung, E.S.3
Na, I.Y.4
Ko, K.S.5
-
12
-
-
0141484326
-
Cationic antimicrobial peptides activate a two-component regulatory system, PmrA-PmrB, that regulates resistance to polymyxin B and cationic antimicrobial peptides in Pseudomonas aeruginosa
-
McPhee JB, Lewenza S, Hancock REW. 2003. Cationic antimicrobial peptides activate a two-component regulatory system, PmrA-PmrB, that regulates resistance to polymyxin B and cationic antimicrobial peptides in Pseudomonas aeruginosa. Mol Microbiol 50:205–217. https://doi.org/10.1046/j.1365-2958.2003.03673.x.
-
(2003)
Mol Microbiol
, vol.50
, pp. 205-217
-
-
McPhee, J.B.1
Lewenza, S.2
Hancock, R.E.W.3
-
13
-
-
84869204668
-
The two-component system CprRS senses cationic peptides and triggers adaptive resistance in Pseudomonas aeruginosa independently of ParRS
-
Fernández L, Jenssen H, Bains M, Wiegand I, Gooderham WJ, Hancock REW. 2012. The two-component system CprRS senses cationic peptides and triggers adaptive resistance in Pseudomonas aeruginosa independently of ParRS. Antimicrob Agents Chemother 56:6212–6222. https://doi.org/10.1128/AAC.01530-12.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 6212-6222
-
-
Fernández, L.1
Jenssen, H.2
Bains, M.3
Wiegand, I.4
Gooderham, W.J.5
Hancock, R.E.W.6
-
14
-
-
84987804431
-
Mechanisms of polymyxin resistance: Acquired and intrinsic resistance in bacteria
-
Olaitan AO, Morand S, Rolain J-M. 2014. Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria. Front Microbiol 5:643. https://doi.org/10.3389/fmicb.2014.00643.
-
(2014)
Front Microbiol
, vol.5
, pp. 643
-
-
Olaitan, A.O.1
Morand, S.2
Rolain, J.-M.3
-
15
-
-
0033759942
-
Role of Pseudomonas aeruginosa PhoP-PhoQ in resistance to antimicrobial cationic peptides and aminoglycosides
-
Macfarlane ELA, Kwasnicka A, Hancock REW. 2000. Role of Pseudomonas aeruginosa PhoP-PhoQ in resistance to antimicrobial cationic peptides and aminoglycosides. Microbiology 146:2543–2554. https://doi.org/10.1099/00221287-146-10-2543.
-
(2000)
Microbiology
, vol.146
, pp. 2543-2554
-
-
Macfarlane, E.L.A.1
Kwasnicka, A.2
Hancock, R.E.W.3
-
16
-
-
0346655236
-
PmrAB, a two-component regulatory system of Pseudomonas aeruginosa that modulates resistance to cationic antimicrobial peptides and addition of aminoarabinose to lipid A
-
Moskowitz SM, Ernst RK, Miller SI. 2004. PmrAB, a two-component regulatory system of Pseudomonas aeruginosa that modulates resistance to cationic antimicrobial peptides and addition of aminoarabinose to lipid A. J Bacteriol 186:575–579. https://doi.org/10.1128/JB.186.2.575-579.2004.
-
(2004)
J Bacteriol
, vol.186
, pp. 575-579
-
-
Moskowitz, S.M.1
Ernst, R.K.2
Miller, S.I.3
-
17
-
-
84863393429
-
PmrB mutations promote polymyxin resistance of Pseudomonas aeruginosa isolated from colistin-treated cystic fibrosis patients
-
Moskowitz SM, Brannon MK, Dasgupta N, Pier M, Sgambati N, Miller AK, Selgrade SE, Miller SI, Denton M, Conway SP, Johansen HK, Høiby N. 2012. PmrB mutations promote polymyxin resistance of Pseudomonas aeruginosa isolated from colistin-treated cystic fibrosis patients. Antimicrob Agents Chemother 56:1019–1030. https://doi.org/10.1128/AAC.05829-11.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1019-1030
-
-
Moskowitz, S.M.1
Brannon, M.K.2
Dasgupta, N.3
Pier, M.4
Sgambati, N.5
Miller, A.K.6
Selgrade, S.E.7
Miller, S.I.8
Denton, M.9
Conway, S.P.10
Johansen, H.K.11
Høiby, N.12
-
18
-
-
84989868142
-
The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions
-
Jochumsen N, Marvig RL, Damkiær S, Jensen RL, Paulander W, Molin S, Jelsbak L, Folkesson A. 2016. The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions. Nat Commun 7:13002. https://doi.org/10.1038/ncomms13002.
-
(2016)
Nat Commun
, vol.7
, pp. 13002
-
-
Jochumsen, N.1
Marvig, R.L.2
Damkiær, S.3
Jensen, R.L.4
Paulander, W.5
Molin, S.6
Jelsbak, L.7
Folkesson, A.8
-
19
-
-
84865323065
-
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
-
Snitkin ES, Zelazny AM, Thomas PJ, Stock F, NISC Comparative Sequencing Program, Henderson DK, Palmore TN, Segre JA. 2012. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med 4:148ra116. https://doi.org/10.1126/scitranslmed.3004129.
-
(2012)
Sci Transl Med
, vol.4
, pp. 148ra116
-
-
Snitkin, E.S.1
Zelazny, A.M.2
Thomas, P.J.3
Stock, F.4
Henderson, D.K.5
Palmore, T.N.6
Segre, J.A.7
-
20
-
-
84947489978
-
Antibiotic-induced within-host resistance development of gram-negative bacteria in patients receiving selective decontamination or standard care
-
Noteboom Y, Ong DSY, Oostdijk EA, Schultz MJ, de Jonge E, Purmer I, Bergmans D, Fijen JW, Kesecioglu J, Bonten MJM. 2015. Antibiotic-induced within-host resistance development of gram-negative bacteria in patients receiving selective decontamination or standard care. Crit Care Med 43: 2582–2588. https://doi.org/10.1097/CCM.0000000000001298.
-
(2015)
Crit Care Med
, vol.43
, pp. 2582-2588
-
-
Noteboom, Y.1
Ong, D.S.Y.2
Oostdijk, E.A.3
Schultz, M.J.4
De Jonge, E.5
Purmer, I.6
Bergmans, D.7
Fijen, J.W.8
Kesecioglu, J.9
Bonten, M.J.M.10
-
21
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243–1247. https://doi.org/10.1038/nature08480.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
Lenski, R.E.7
Kim, J.F.8
-
22
-
-
84555171441
-
Evolutionary paths to antibiotic resistance under dynamically sustained drug selection
-
Toprak E, Veres A, Michel J-B, Chait R, Hartl DL, Kishony R. 2012. Evolutionary paths to antibiotic resistance under dynamically sustained drug selection. Nat Genet 44:101–105. https://doi.org/10.1038/ng.1034.
-
(2012)
Nat Genet
, vol.44
, pp. 101-105
-
-
Toprak, E.1
Veres, A.2
Michel, J.-B.3
Chait, R.4
Hartl, D.L.5
Kishony, R.6
-
23
-
-
84857646835
-
Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: An international expert proposal for interim standard definitions for acquired resistance
-
Magiorakos A-P, Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, Paterson DL, Rice LB, Stelling J, Struelens MJ, Vatopoulos A, Weber JT, Monnet DL. 2012. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect 18:268–281. https://doi.org/10.1111/j.1469-0691.2011.03570.x.
-
(2012)
Clin Microbiol Infect
, vol.18
, pp. 268-281
-
-
Magiorakos, A.-P.1
Srinivasan, A.2
Carey, R.B.3
Carmeli, Y.4
Falagas, M.E.5
Giske, C.G.6
Harbarth, S.7
Hindler, J.F.8
Kahlmeter, G.9
Olsson-Liljequist, B.10
Paterson, D.L.11
Rice, L.B.12
Stelling, J.13
Struelens, M.J.14
Vatopoulos, A.15
Weber, J.T.16
Monnet, D.L.17
-
24
-
-
84886740798
-
Effect of metallo--lactamase production and multidrug resistance on clinical outcomes in patients with Pseudomonas aeruginosa bloodstream infection: A retrospective cohort study
-
Willmann M, Kuebart I, Marschal M, Schröppel K, Vogel W, Flesch I, Markert U, Autenrieth IB, Hölzl F, Peter S. 2013. Effect of metallo--lactamase production and multidrug resistance on clinical outcomes in patients with Pseudomonas aeruginosa bloodstream infection: a retrospective cohort study. BMC Infect Dis 13:515. https://doi.org/10.1186/1471-2334-13-515.
-
(2013)
BMC Infect Dis
, vol.13
, pp. 515
-
-
Willmann, M.1
Kuebart, I.2
Marschal, M.3
Schröppel, K.4
Vogel, W.5
Flesch, I.6
Markert, U.7
Autenrieth, I.B.8
Hölzl, F.9
Peter, S.10
-
25
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. 2012. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 67:2640–2644. https://doi.org/10.1093/jac/dks261.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
26
-
-
84875138391
-
Building a morbidostat: An automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition
-
Toprak E, Veres A, Yildiz S, Pedraza JM, Chait R, Paulsson J, Kishony R. 2013. Building a morbidostat: an automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition. Nat Protoc 8:555–567. https://doi.org/10.1038/nprot.2013.021.
-
(2013)
Nat Protoc
, vol.8
, pp. 555-567
-
-
Toprak, E.1
Veres, A.2
Yildiz, S.3
Pedraza, J.M.4
Chait, R.5
Paulsson, J.6
Kishony, R.7
-
27
-
-
84880396301
-
Relation of microbial biomass to counting units for Pseudomonas aeruginosa
-
Kim D-J, Chung S-G, Lee S-H, Choi J-W. 2012. Relation of microbial biomass to counting units for Pseudomonas aeruginosa. Afr J Microbiol Res 6:4620–4622.
-
(2012)
Afr J Microbiol Res
, vol.6
, pp. 4620-4622
-
-
Kim, D.-J.1
Chung, S.-G.2
Lee, S.-H.3
Choi, J.-W.4
-
28
-
-
52449096930
-
Tyrosine phosphorylation of the UDP-glucose dehydrogenase of Escherichia coli is at the crossroads of colanic acid synthesis and polymyxin resistance
-
Lacour S, Bechet E, Cozzone AJ, Mijakovic I, Grangeasse C. 2008. Tyrosine phosphorylation of the UDP-glucose dehydrogenase of Escherichia coli is at the crossroads of colanic acid synthesis and polymyxin resistance. PLoS One 3:e3053. https://doi.org/10.1371/journal.pone.0003053.
-
(2008)
Plos One
, vol.3
, pp. e3053
-
-
Lacour, S.1
Bechet, E.2
Cozzone, A.J.3
Mijakovic, I.4
Grangeasse, C.5
-
29
-
-
0036046150
-
Imp/OstA is required for cell envelope bio-genesis in Escherichia coli
-
Braun M, Silhavy TJ. 2002. Imp/OstA is required for cell envelope bio-genesis in Escherichia coli. Mol Microbiol 45:1289–1302. https://doi.org/10.1046/j.1365-2958.2002.03091.x.
-
(2002)
Mol Microbiol
, vol.45
, pp. 1289-1302
-
-
Braun, M.1
Silhavy, T.J.2
-
30
-
-
77950438894
-
Characterization of the two-protein complex in Escherichia coli responsible for lipopolysaccharide assembly at the outer membrane
-
Chng S-S, Ruiz N, Chimalakonda G, Silhavy TJ, Kahne D. 2010. Characterization of the two-protein complex in Escherichia coli responsible for lipopolysaccharide assembly at the outer membrane. Proc Natl Acad Sci U S A 107:5363–5368. https://doi.org/10.1073/pnas.0912872107.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 5363-5368
-
-
Chng, S.-S.1
Ruiz, N.2
Chimalakonda, G.3
Silhavy, T.J.4
Kahne, D.5
-
31
-
-
78649650250
-
Colistin resistance in Acinetobacter baumannii is mediated by complete loss of lipopolysaccharide production
-
Moffatt JH, Harper M, Harrison P, Hale JDF, Vinogradov E, Seemann T, Henry R, Crane B, Michael FS, Cox AD, Adler B, Nation RL, Li J, Boyce JD. 2010. Colistin resistance in Acinetobacter baumannii is mediated by complete loss of lipopolysaccharide production. Antimicrob Agents Chemother 54:4971– 4977. https://doi.org/10.1128/AAC.00834-10.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 4971-4977
-
-
Moffatt, J.H.1
Harper, M.2
Harrison, P.3
Hale, J.D.F.4
Vinogradov, E.5
Seemann, T.6
Henry, R.7
Crane, B.8
Michael, F.S.9
Cox, A.D.10
Adler, B.11
Nation, R.L.12
Li, J.13
Boyce, J.D.14
-
32
-
-
84957899540
-
Mutant alleles of lptD increase the permeability of Pseudomonas aeruginosa and define determinants of intrinsic resistance to antibiotics
-
Balibar CJ, Grabowicz M. 2016. Mutant alleles of lptD increase the permeability of Pseudomonas aeruginosa and define determinants of intrinsic resistance to antibiotics. Antimicrob Agents Chemother 60: 845–854. https://doi.org/10.1128/AAC.01747-15.
-
(2016)
Antimicrob Agents Chemother
, vol.60
, pp. 845-854
-
-
Balibar, C.J.1
Grabowicz, M.2
-
33
-
-
40449113870
-
Functional characterization of MigA and WapR: Putative rhamnosyltransferases involved in outer core oligosaccharide biosynthesis of Pseudomonas aeruginosa
-
Poon KKH, Westman EL, Vinogradov E, Jin S, Lam JS. 2008. Functional characterization of MigA and WapR: putative rhamnosyltransferases involved in outer core oligosaccharide biosynthesis of Pseudomonas aeruginosa. J Bacteriol 190:1857–1865. https://doi.org/10.1128/JB.01546-07.
-
(2008)
J Bacteriol
, vol.190
, pp. 1857-1865
-
-
Poon, K.K.H.1
Westman, E.L.2
Vinogradov, E.3
Jin, S.4
Lam, J.S.5
-
34
-
-
84955685330
-
The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa
-
Dettman JR, Sztepanacz JL, Kassen R. 2016. The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa. BMC Genomics 17:27. https://doi.org/10.1186/s12864-015-2244-3.
-
(2016)
BMC Genomics
, vol.17
, pp. 27
-
-
Dettman, J.R.1
Sztepanacz, J.L.2
Kassen, R.3
-
35
-
-
0030620272
-
Role of mutator alleles in adaptive evolution
-
Taddei F, Radman M, Maynard-Smith J, Toupance B, Gouyon PH, Godelle B. 1997. Role of mutator alleles in adaptive evolution. Nature 387: 700–702. https://doi.org/10.1038/42696.
-
(1997)
Nature
, vol.387
, pp. 700-702
-
-
Taddei, F.1
Radman, M.2
Maynard-Smith, J.3
Toupance, B.4
Gouyon, P.H.5
Godelle, B.6
-
36
-
-
0037699291
-
The role of mutators in the emergence of antibiotic-resistant bacteria
-
Chopra I, O’Neill AJ, Miller K. 2003. The role of mutators in the emergence of antibiotic-resistant bacteria. Drug Resist Updat 6:137–145. https://doi.org/10.1016/S1368-7646(03)00041-4.
-
(2003)
Drug Resist Updat
, vol.6
, pp. 137-145
-
-
Chopra, I.1
O’Neill, A.J.2
Miller, K.3
-
38
-
-
70350313477
-
Molecular epidemiology and mechanisms of carbapenem resistance in Pseudomonas aeruginosa
-
Rodríguez-Martínez J-M, Poirel L, Nordmann P. 2009. Molecular epidemiology and mechanisms of carbapenem resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother 53:4783–4788. https://doi.org/10.1128/AAC.00574-09.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 4783-4788
-
-
Rodríguez-Martínez, J.-M.1
Poirel, L.2
Nordmann, P.3
-
39
-
-
84872031103
-
Characterization of the polymyxin B resistome of Pseudomonas aeruginosa
-
Fernández L, Álvarez-Ortega C, Wiegand I, Olivares J, Kocíncová D, Lam JS, Martínez JL, Hancock REW. 2013. Characterization of the polymyxin B resistome of Pseudomonas aeruginosa. Antimicrob Agents Chemother 57:110–119. https://doi.org/10.1128/AAC.01583-12.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 110-119
-
-
Fernández, L.1
Álvarez-Ortega, C.2
Wiegand, I.3
Olivares, J.4
Kocíncová, D.5
Lam, J.S.6
Martínez, J.L.7
Hancock, R.E.W.8
-
40
-
-
85027945845
-
Whole-genome sequencing targets drug-resistant bacterial infections
-
Punina NV, Makridakis NM, Remnev MA, Topunov AF. 2015. Whole-genome sequencing targets drug-resistant bacterial infections. Hum Genomics 9:19. https://doi.org/10.1186/s40246-015-0037-z.
-
(2015)
Hum Genomics
, vol.9
, pp. 19
-
-
Punina, N.V.1
Makridakis, N.M.2
Remnev, M.A.3
Topunov, A.F.4
-
41
-
-
84900830372
-
Experimental evolution as an efficient tool to dissect adaptive paths to antibiotic resistance
-
Jansen G, Barbosa C, Schulenburg H. 2013. Experimental evolution as an efficient tool to dissect adaptive paths to antibiotic resistance. Drug Resist Updat 16:96–107. https://doi.org/10.1016/j.drup.2014.02.002.
-
(2013)
Drug Resist Updat
, vol.16
, pp. 96-107
-
-
Jansen, G.1
Barbosa, C.2
Schulenburg, H.3
-
42
-
-
84987597485
-
Spatiotemporal microbial evolution on antibiotic landscapes
-
Baym M, Lieberman TD, Kelsic ED, Chait R, Gross R, Yelin I, Kishony R. 2016. Spatiotemporal microbial evolution on antibiotic landscapes. Science 353:1147–1151. https://doi.org/10.1126/science.aag0822.
-
(2016)
Science
, vol.353
, pp. 1147-1151
-
-
Baym, M.1
Lieberman, T.D.2
Kelsic, E.D.3
Chait, R.4
Gross, R.5
Yelin, I.6
Kishony, R.7
-
44
-
-
40549126258
-
Tolerance to the antimicrobial peptide colistin in Pseudomonas aeruginosa biofilms is linked to metabolically active cells, and depends on the pmr and mexAB-oprM genes
-
Pamp SJ, Gjermansen M, Johansen HK, Tolker-Nielsen T. 2008. Tolerance to the antimicrobial peptide colistin in Pseudomonas aeruginosa biofilms is linked to metabolically active cells, and depends on the pmr and mexAB-oprM genes. Mol Microbiol 68:223–240. https://doi.org/10.1111/j.1365-2958.2008.06152.x.
-
(2008)
Mol Microbiol
, vol.68
, pp. 223-240
-
-
Pamp, S.J.1
Gjermansen, M.2
Johansen, H.K.3
Tolker-Nielsen, T.4
-
45
-
-
77953523940
-
Activation of PmrA inhibits LpxT-dependent phosphorylation of lipid A promoting resistance to antimicrobial peptides
-
Herrera CM, Hankins JV, Trent MS. 2010. Activation of PmrA inhibits LpxT-dependent phosphorylation of lipid A promoting resistance to antimicrobial peptides. Mol Microbiol 76:1444–1460. https://doi.org/10.1111/j.1365-2958.2010.07150.x.
-
(2010)
Mol Microbiol
, vol.76
, pp. 1444-1460
-
-
Herrera, C.M.1
Hankins, J.V.2
Trent, M.S.3
-
46
-
-
84912017215
-
Characterization of Pseudomonas aeruginosa LpxT reveals dual positional lipid A kinase activity and co-ordinated control of outer membrane modification
-
Nowicki EM, O’Brien JP, Brodbelt JS, Trent MS. 2014. Characterization of Pseudomonas aeruginosa LpxT reveals dual positional lipid A kinase activity and co-ordinated control of outer membrane modification. Mol Microbiol 94:728–741. https://doi.org/10.1111/mmi.12796.
-
(2014)
Mol Microbiol
, vol.94
, pp. 728-741
-
-
Nowicki, E.M.1
O’Brien, J.P.2
Brodbelt, J.S.3
Trent, M.S.4
-
47
-
-
63049093296
-
The cost of resistance to colistin in Acinetobacter baumannii: A proteomic perspective
-
Fernández-Reyes M, Rodríguez-Falcón M, Chiva C, Pachón J, Andreu D, Rivas L. 2009. The cost of resistance to colistin in Acinetobacter baumannii: a proteomic perspective. Proteomics 9:1632–1645. https://doi.org/10.1002/pmic.200800434.
-
(2009)
Proteomics
, vol.9
, pp. 1632-1645
-
-
Fernández-Reyes, M.1
Rodríguez-Falcón, M.2
Chiva, C.3
Pachón, J.4
Andreu, D.5
Rivas, L.6
-
48
-
-
79751501298
-
Impaired virulence and in vivo fitness of colistin-resistant Acinetobacter baumannii
-
López-Rojas R, Domínguez-Herrera J, McConnell MJ, Docobo-Peréz F, Smani Y, Fernández-Reyes M, Rivas L, Pachón J. 2011. Impaired virulence and in vivo fitness of colistin-resistant Acinetobacter baumannii. J Infect Dis 203:545–548. https://doi.org/10.1093/infdis/jiq086.
-
(2011)
J Infect Dis
, vol.203
, pp. 545-548
-
-
López-Rojas, R.1
Domínguez-Herrera, J.2
McConnell, M.J.3
Docobo-Peréz, F.4
Smani, Y.5
Fernández-Reyes, M.6
Rivas, L.7
Pachón, J.8
-
49
-
-
85006820983
-
The effect of colistin resistance-associated mutations on the fitness of Acinetobacter baumannii
-
Mu X, Wang N, Li X, Shi K, Zhou Z, Yu Y, Hua X. 2016. The effect of colistin resistance-associated mutations on the fitness of Acinetobacter baumannii. Front Microbiol 7:1715. https://doi.org/10.3389/fmicb.2016.01715.
-
(2016)
Front Microbiol
, vol.7
, pp. 1715
-
-
Mu, X.1
Wang, N.2
Li, X.3
Shi, K.4
Zhou, Z.5
Yu, Y.6
Hua, X.7
-
50
-
-
84946200308
-
Loss of hypermucoviscosity and increased fitness cost in colistin-resistant Klebsiella pneumoniae sequence type 23 strains
-
Choi M-J, Ko KS. 2015. Loss of hypermucoviscosity and increased fitness cost in colistin-resistant Klebsiella pneumoniae sequence type 23 strains. Antimicrob Agents Chemother 59:6763– 6773. https://doi.org/10.1128/AAC.00952-15.
-
(2015)
Antimicrob Agents Chemother
, vol.59
, pp. 6763-6773
-
-
Choi, M.-J.1
Ko, K.S.2
-
51
-
-
84884679783
-
Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators
-
Marvig RL, Johansen HK, Molin S, Jelsbak L. 2013. Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators. PLoS Genet 9:e1003741. https://doi.org/10.1371/journal.pgen.1003741.
-
(2013)
Plos Genet
, vol.9
, pp. e1003741
-
-
Marvig, R.L.1
Johansen, H.K.2
Molin, S.3
Jelsbak, L.4
-
52
-
-
0034924241
-
Determination of minimum inhibitory concentrations
-
Andrews JM. 2001. Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48:5–16. https://doi.org/10.1093/jac/48.suppl_1.5.
-
(2001)
J Antimicrob Chemother
, vol.48
, pp. 5-16
-
-
Andrews, J.M.1
-
53
-
-
22144483439
-
Detection of Pseudomonas aeruginosa producing metallo--lactamases in a large centralized laboratory
-
Pitout JDD, Gregson DB, Poirel L, McClure J-A, Le P, Church DL. 2005. Detection of Pseudomonas aeruginosa producing metallo--lactamases in a large centralized laboratory. J Clin Microbiol 43:3129–3135. https://doi.org/10.1128/JCM.43.7.3129-3135.2005.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3129-3135
-
-
Pitout, J.D.D.1
Gregson, D.B.2
Poirel, L.3
McClure, J.-A.4
Le, P.5
Church, D.L.6
-
54
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760. https://doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
55
-
-
84901417347
-
Prokka: Rapid prokaryotic genome annotation
-
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069. https://doi.org/10.1093/bioinformatics/btu153.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
56
-
-
84971315630
-
Population genomics of intrapatient HIV-1 evolution
-
Zanini F, Brodin J, Thebo L, Lanz C, Bratt G, Albert J, Neher RA. 2016. Population genomics of intrapatient HIV-1 evolution. eLife Sci 4:e11282.
-
(2016)
Elife Sci
, vol.4
, pp. e11282
-
-
Zanini, F.1
Brodin, J.2
Thebo, L.3
Lanz, C.4
Bratt, G.5
Albert, J.6
Neher, R.A.7
-
59
-
-
84870422798
-
QualiMap: Evaluating next generation sequencing alignment data
-
García-Alcalde F, Okonechnikov K, Carbonell J, Cruz LM, Götz S, Tarazona S, Dopazo J, Meyer TF, Conesa A. 2012. QualiMap: evaluating next generation sequencing alignment data. Bioinformatics 28:2678 –2679. https://doi.org/10.1093/bioinformatics/bts503.
-
(2012)
Bioinformatics
, vol.28
, pp. 2678-2679
-
-
García-Alcalde, F.1
Okonechnikov, K.2
Carbonell, J.3
Cruz, L.M.4
Götz, S.5
Tarazona, S.6
Dopazo, J.7
Meyer, T.F.8
Conesa, A.9
-
60
-
-
79952595565
-
The NumPy array: A structure for efficient numerical computation
-
van der Walt S, Colbert SC, Varoquaux G. 2011. The NumPy array: a structure for efficient numerical computation. Comput Sci Eng 13:22–30. https://doi.org/10.1109/MCSE.2011.37.
-
(2011)
Comput Sci Eng
, vol.13
, pp. 22-30
-
-
Van der Walt, S.1
Colbert, S.C.2
Varoquaux, G.3
-
61
-
-
65649092976
-
Biopython: Freely available Python tools for computational molecular biology and bioinformatics
-
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, Hoon MJLd. 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25:1422–1423. https://doi.org/10.1093/bioinformatics/btp163.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.A.1
Antao, T.2
Chang, J.T.3
Chapman, B.A.4
Cox, C.J.5
Dalke, A.6
Friedberg, I.7
Hamelryck, T.8
Kauff, F.9
Wilczynski, B.10
Hoon, M.11
-
62
-
-
68549104404
-
The sequence Alignment/Map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. https://doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
|