-
1
-
-
84874066976
-
Role of bacterial surface structures on the interaction of Klebsiella pneumoniae with phagocytes
-
2345762
-
March C, Cano V, Moranta D, Llobet E, Perez-Gutierrez C, Tomas JM, et al. Role of bacterial surface structures on the interaction of Klebsiella pneumoniae with phagocytes. PloS one. 2013;8(2):e56847. doi: 10.1371/journal.pone.0056847 23457627
-
(2013)
PloS one
, vol.8
, Issue.2
, pp. e56847
-
-
March, C.1
Cano, V.2
Moranta, D.3
Llobet, E.4
Perez-Gutierrez, C.5
Tomas, J.M.6
-
2
-
-
34250374044
-
Upregulation of capsule enables Streptococcus pyogenes to evade immune recognition by antigen-specific antibodies directed to the G-related alpha2-macroglobulin-binding protein GRAB located on the bacterial surface
-
1754480
-
Dinkla K, Sastalla I, Godehardt AW, Janze N, Chhatwal GS, Rohde M, et al. Upregulation of capsule enables Streptococcus pyogenes to evade immune recognition by antigen-specific antibodies directed to the G-related alpha2-macroglobulin-binding protein GRAB located on the bacterial surface. Microbes Infect. 2007;9(8):922–31. doi: 10.1016/j.micinf.2007.03.011 17544803
-
(2007)
Microbes Infect
, vol.9
, Issue.8
, pp. 922-931
-
-
Dinkla, K.1
Sastalla, I.2
Godehardt, A.W.3
Janze, N.4
Chhatwal, G.S.5
Rohde, M.6
-
3
-
-
76749095490
-
The Streptococcus pneumoniae capsule inhibits complement activity and neutrophil phagocytosis by multiple mechanisms
-
1994883
-
Hyams C, Camberlein E, Cohen JM, Bax K, Brown JS, The Streptococcus pneumoniae capsule inhibits complement activity and neutrophil phagocytosis by multiple mechanisms. Infect Immun. 2010;78(2):704–15. doi: 10.1128/IAI.00881-09 19948837
-
(2010)
Infect Immun
, vol.78
, Issue.2
, pp. 704-715
-
-
Hyams, C.1
Camberlein, E.2
Cohen, J.M.3
Bax, K.4
Brown, J.S.5
-
4
-
-
0037396567
-
The K1 capsule modulates trafficking of E. coli-containing vacuoles and enhances intracellular bacterial survival in human brain microvascular endothelial cells
-
1267568
-
Kim KJ, Elliott SJ, Di Cello F, Stins MF, Kim KS, The K1 capsule modulates trafficking of E. coli-containing vacuoles and enhances intracellular bacterial survival in human brain microvascular endothelial cells. Cell Microbiol. 2003;5(4):245–52. 12675682
-
(2003)
Cell Microbiol
, vol.5
, Issue.4
, pp. 245-252
-
-
Kim, K.J.1
Elliott, S.J.2
Di Cello, F.3
Stins, M.F.4
Kim, K.S.5
-
5
-
-
0035039314
-
Induction of interleukin-10 and down-regulation of cytokine production by Klebsiella pneumoniae capsule in mice with pulmonary infection
-
1133925
-
Yoshida K, Matsumoto T, Tateda K, Uchida K, Tsujimoto S, Yamaguchi K, Induction of interleukin-10 and down-regulation of cytokine production by Klebsiella pneumoniae capsule in mice with pulmonary infection. J Med Microbiol. 2001;50(5):456–61. doi: 10.1099/0022-1317-50-5-456 11339254
-
(2001)
J Med Microbiol
, vol.50
, Issue.5
, pp. 456-461
-
-
Yoshida, K.1
Matsumoto, T.2
Tateda, K.3
Uchida, K.4
Tsujimoto, S.5
Yamaguchi, K.6
-
6
-
-
51549103890
-
Capsule enlargement in Cryptococcus neoformans confers resistance to oxidative stress suggesting a mechanism for intracellular survival
-
1855431
-
Zaragoza O, Chrisman CJ, Castelli MV, Frases S, Cuenca-Estrella M, Rodriguez-Tudela JL, et al. Capsule enlargement in Cryptococcus neoformans confers resistance to oxidative stress suggesting a mechanism for intracellular survival. Cell Microbiol2008;10(10):2043–57. doi: 10.1111/j.1462-5822.2008.01186.x 18554313
-
(2008)
Cell Microbiol
, vol.10
, Issue.10
, pp. 2043-2057
-
-
Zaragoza, O.1
Chrisman, C.J.2
Castelli, M.V.3
Frases, S.4
Cuenca-Estrella, M.5
Rodriguez-Tudela, J.L.6
-
7
-
-
0742272596
-
Capsular expression in Streptococcus pneumoniae negatively affects spontaneous and antibiotic-induced lysis and contributes to antibiotic tolerance
-
1472289
-
Fernebro J, Andersson I, Sublett J, Morfeldt E, Novak R, Tuomanen E, et al. Capsular expression in Streptococcus pneumoniae negatively affects spontaneous and antibiotic-induced lysis and contributes to antibiotic tolerance. J Infect Dis. 2004;189(2):328–38. doi: 10.1086/380564 14722899
-
(2004)
J Infect Dis
, vol.189
, Issue.2
, pp. 328-338
-
-
Fernebro, J.1
Andersson, I.2
Sublett, J.3
Morfeldt, E.4
Novak, R.5
Tuomanen, E.6
-
8
-
-
9244224674
-
Capsule polysaccharide mediates bacterial resistance to antimicrobial peptides
-
1555763
-
Campos MA, Vargas MA, Regueiro V, Llompart CM, Alberti S, Bengoechea JA, Capsule polysaccharide mediates bacterial resistance to antimicrobial peptides. Infect Immun. 2004;72(12):7107–14. doi: 10.1128/IAI.72.12.7107-7114.2004 15557634
-
(2004)
Infect Immun
, vol.72
, Issue.12
, pp. 7107-7114
-
-
Campos, M.A.1
Vargas, M.A.2
Regueiro, V.3
Llompart, C.M.4
Alberti, S.5
Bengoechea, J.A.6
-
10
-
-
0025152680
-
-
2404690,. In:.;. p. –. Berlin Heidelberg Springe
-
Moxon ER, Kroll JS, Jann K, Jann B, The role of bacterial polysaccharide capsules as virulence factors. In: Bacterial Capsules. Current Topics in Microbiology and Immunology. 150SpringerBerlin Heidelberg; 1990. p. 65–85. 2404690
-
(1990)
Bacterial Capsules. Current Topics in Microbiology and Immunology
, vol.150
, pp. 65-85
-
-
Moxon, E.R.1
Kroll, J.S.2
Jann, K.3
Jann, B.4
-
11
-
-
33645774644
-
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
-
1653206
-
Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, et al. Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet. 2006;2(3):e31. doi: 10.1371/journal.pgen.0020031 16532061
-
(2006)
PLoS Genet
, vol.2
, Issue.3
, pp. e31
-
-
Bentley, S.D.1
Aanensen, D.M.2
Mavroidi, A.3
Saunders, D.4
Rabbinowitsch, E.5
Collins, M.6
-
12
-
-
80052864182
-
Sequence diversity within the capsular genes of Streptococcus pneumoniae serogroup 6 and 19
-
2194983
-
Elberse K, Witteveen S, van der Heide H, van de Pol I, Schot C, van der Ende A, et al. Sequence diversity within the capsular genes of Streptococcus pneumoniae serogroup 6 and 19. PloS one. 2011;6(9):e25018. doi: 10.1371/journal.pone.0025018 21949837
-
(2011)
PloS one
, vol.6
, Issue.9
, pp. e25018
-
-
Elberse, K.1
Witteveen, S.2
van der Heide, H.3
van de Pol, I.4
Schot, C.5
van der Ende, A.6
-
13
-
-
0033022996
-
Structure, assembly and regulation of expression of capsules in Escherichia coli
-
1020095
-
Whitfield C, Roberts IS, Structure, assembly and regulation of expression of capsules in Escherichia coli. Molecular microbiology. 1999;31(5):1307–19. 10200953
-
(1999)
Molecular microbiology
, vol.31
, Issue.5
, pp. 1307-1319
-
-
Whitfield, C.1
Roberts, I.S.2
-
14
-
-
84945156736
-
Genetic analysis of capsular polysaccharide synthesis gene clusters in 79 capsular types of Klebsiella spp
-
2649330
-
Pan YJ, Lin TL, Chen CT, Chen YY, Hsieh PF, Hsu CR, et al. Genetic analysis of capsular polysaccharide synthesis gene clusters in 79 capsular types of Klebsiella spp. Sci Rep. 2015;5:15573. doi: 10.1038/srep15573 26493302
-
(2015)
Sci Rep
, vol.5
, pp. 15573
-
-
Pan, Y.J.1
Lin, T.L.2
Chen, C.T.3
Chen, Y.Y.4
Hsieh, P.F.5
Hsu, C.R.6
-
15
-
-
71449115272
-
Genetic diversity of capsular polysaccharide biosynthesis in Klebsiella pneumoniae clinical isolates
-
1974499
-
Shu HY, Fung CP, Liu YM, Wu KM, Chen YT, Li LH, et al. Genetic diversity of capsular polysaccharide biosynthesis in Klebsiella pneumoniae clinical isolates. Microbiology. 2009;155(Pt 12):4170–83. doi: 10.1099/mic.0.029017-0 19744990
-
(2009)
Microbiology
, vol.155
, pp. 4170-4183
-
-
Shu, H.Y.1
Fung, C.P.2
Liu, Y.M.3
Wu, K.M.4
Chen, Y.T.5
Li, L.H.6
-
16
-
-
84891425648
-
Campylobacter polysaccharide capsules: virulence and vaccines
-
2291959
-
Guerry P, Poly F, Riddle M, Maue AC, Chen YH, Monteiro MA, Campylobacter polysaccharide capsules: virulence and vaccines. Front Cell Infect Microbiol. 2012;2:7. doi: 10.3389/fcimb.2012.00007 22919599
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 7
-
-
Guerry, P.1
Poly, F.2
Riddle, M.3
Maue, A.C.4
Chen, Y.H.5
Monteiro, M.A.6
-
17
-
-
84946226210
-
Surface polysaccharides from Acinetobacter baumannii: Structures and syntheses
-
Giguere D, Surface polysaccharides from Acinetobacter baumannii: Structures and syntheses. Carbohydrate Res. 2015;418:29–43. doi: 10.1016/j.carres.2015.10.001.
-
(2015)
Carbohydrate Res
, vol.418
, pp. 29-43
-
-
Giguere, D.1
-
18
-
-
80053231916
-
Capsules of Streptococcus pneumoniae and other bacteria: paradigms for polysaccharide biosynthesis and regulation
-
2172193
-
Yother J, Capsules of Streptococcus pneumoniae and other bacteria: paradigms for polysaccharide biosynthesis and regulation. Annu Rev Microbiol. 2011;65:563–81. doi: 10.1146/annurev.micro.62.081307.162944 21721938
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 563-581
-
-
Yother, J.1
-
19
-
-
84885019160
-
Structure, biosynthesis, and function of bacterial capsular polysaccharides synthesized by ABC transporter-dependent pathways
-
Willis LM, Whitfield C, Structure, biosynthesis, and function of bacterial capsular polysaccharides synthesized by ABC transporter-dependent pathways. Carbohydrate Res. 2013;378:35–44. doi: 10.1016/j.carres.2013.05.007.
-
(2013)
Carbohydrate Res
, vol.378
, pp. 35-44
-
-
Willis, L.M.1
Whitfield, C.2
-
20
-
-
33746356503
-
Biosynthesis and assembly of capsular polysaccharides in Escherichia coli
-
1675648
-
Whitfield C, Biosynthesis and assembly of capsular polysaccharides in Escherichia coli. Annu Rev Biochem. 2006;75:39–68. doi: 10.1146/annurev.biochem.75.103004.142545 16756484
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 39-68
-
-
Whitfield, C.1
-
21
-
-
77958007497
-
ABC transporters involved in export of cell surface glycoconjugates
-
Cuthbertson L, Kos V, Whitfield C, ABC transporters involved in export of cell surface glycoconjugates. Microbiol Mol Biol R. 2010;74(3):341–62. doi: 10.1128/MMBR.00009-10.
-
(2010)
Microbiol Mol Biol R
, vol.74
, Issue.3
, pp. 341-362
-
-
Cuthbertson, L.1
Kos, V.2
Whitfield, C.3
-
22
-
-
84977555238
-
Protection of rhesus macaques against inhalational anthrax with a Bacillus anthracis capsule conjugate vaccine
-
2732918
-
Chabot DJ, Ribot WJ, Joyce J, Cook J, Hepler R, Nahas D, et al. Protection of rhesus macaques against inhalational anthrax with a Bacillus anthracis capsule conjugate vaccine. Vaccine. 2016;34(34):4012–6. doi: 10.1016/j.vaccine.2016.06.031 27329184
-
(2016)
Vaccine
, vol.34
, Issue.34
, pp. 4012-4016
-
-
Chabot, D.J.1
Ribot, W.J.2
Joyce, J.3
Cook, J.4
Hepler, R.5
Nahas, D.6
-
23
-
-
79952498476
-
Meningococcal glycoconjugate vaccines
-
2117839
-
Gasparini R, Panatto D, Meningococcal glycoconjugate vaccines. Human vaccines. 2011;7(2):170–82. doi: 10.4161/hv.7.2.13717 21178398
-
(2011)
Human vaccines
, vol.7
, Issue.2
, pp. 170-182
-
-
Gasparini, R.1
Panatto, D.2
-
24
-
-
3843055808
-
Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster
-
1529747
-
Brisse S, Issenhuth-Jeanjean S, Grimont PA, Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster. Journal of clinical microbiology. 2004;42(8):3388–98. doi: 10.1128/JCM.42.8.3388-3398.2004 15297473
-
(2004)
Journal of clinical microbiology
, vol.42
, Issue.8
, pp. 3388-3398
-
-
Brisse, S.1
Issenhuth-Jeanjean, S.2
Grimont, P.A.3
-
25
-
-
0037505612
-
Serotyping Streptococcus pneumoniae by multiplex PCR
-
1279185
-
Brito DA, Ramirez M, de Lencastre H, Serotyping Streptococcus pneumoniae by multiplex PCR. J Clin Microbiol. 2003;41(6):2378–84. doi: 10.1128/JCM.41.6.2378-2384.2003 12791852
-
(2003)
J Clin Microbiol
, vol.41
, Issue.6
, pp. 2378-2384
-
-
Brito, D.A.1
Ramirez, M.2
de Lencastre, H.3
-
26
-
-
33751094307
-
Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence
-
1707968
-
Gibson DL, White AP, Snyder SD, Martin S, Heiss C, Azadi P, et al. Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence. J Bacteriol. 2006;188(22):7722–30. doi: 10.1128/JB.00809-06 17079680
-
(2006)
J Bacteriol
, vol.188
, Issue.22
, pp. 7722-7730
-
-
Gibson, D.L.1
White, A.P.2
Snyder, S.D.3
Martin, S.4
Heiss, C.5
Azadi, P.6
-
27
-
-
22544486262
-
Identification of an Escherichia coli operon required for formation of the O-antigen capsule
-
1603022
-
Peleg A, Shifrin Y, Ilan O, Nadler-Yona C, Nov S, Koby S, et al. Identification of an Escherichia coli operon required for formation of the O-antigen capsule. J Bacteriol. 2005;187(15):5259–66. doi: 10.1128/JB.187.15.5259-5266.2005 16030220
-
(2005)
J Bacteriol
, vol.187
, Issue.15
, pp. 5259-5266
-
-
Peleg, A.1
Shifrin, Y.2
Ilan, O.3
Nadler-Yona, C.4
Nov, S.5
Koby, S.6
-
28
-
-
0029099312
-
Hyaluronic-Acid Synthesis Operon (Has) Expression in Group-a Streptococci
-
762917
-
Crater DL, Vanderijn I, Hyaluronic-Acid Synthesis Operon (Has) Expression in Group-a Streptococci. J Biol Chem. 1995;270(31):18452–8. 7629171
-
(1995)
J Biol Chem
, vol.270
, Issue.31
, pp. 18452-18458
-
-
Crater, D.L.1
Vanderijn, I.2
-
29
-
-
33745289074
-
Poly-gamma-glutamate in bacteria
-
1668978
-
Candela T, Fouet A, Poly-gamma-glutamate in bacteria. Molecular microbiology. 2006;60(5):1091–8. doi: 10.1111/j.1365-2958.2006.05179.x 16689787
-
(2006)
Molecular microbiology
, vol.60
, Issue.5
, pp. 1091-1098
-
-
Candela, T.1
Fouet, A.2
-
30
-
-
84872038034
-
Pneumococcal capsular switching: a historical perspective
-
2317576
-
Wyres KL, Lambertsen LM, Croucher NJ, McGee L, von Gottberg A, Linares J, et al. Pneumococcal capsular switching: a historical perspective. J Infect Dis. 2013;207(3):439–49. doi: 10.1093/infdis/jis703 23175765
-
(2013)
J Infect Dis
, vol.207
, Issue.3
, pp. 439-449
-
-
Wyres, K.L.1
Lambertsen, L.M.2
Croucher, N.J.3
McGee, L.4
von Gottberg, A.5
Linares, J.6
-
31
-
-
84949208071
-
Genetic, Biochemical, and Structural Analyses of Bacterial Surface Polysaccharides
-
2662147
-
Cooper CA, Mainprize IL, Nickerson NN, Genetic, Biochemical, and Structural Analyses of Bacterial Surface Polysaccharides. Adv Exp Med Biol. 2015;883:295–315. doi: 10.1007/978-3-319-23603-2_16 26621474
-
(2015)
Adv Exp Med Biol
, vol.883
, pp. 295-315
-
-
Cooper, C.A.1
Mainprize, I.L.2
Nickerson, N.N.3
-
32
-
-
84883176518
-
A common pathway for O-linked protein-glycosylation and synthesis of capsule in Acinetobacter baumannii
-
2378239
-
Lees-Miller RG, Iwashkiw JA, Scott NE, Seper A, Vinogradov E, Schild S, et al. A common pathway for O-linked protein-glycosylation and synthesis of capsule in Acinetobacter baumannii. Mol Microbiol. 2013;89(5):816–30. doi: 10.1111/mmi.12300 23782391
-
(2013)
Mol Microbiol
, vol.89
, Issue.5
, pp. 816-830
-
-
Lees-Miller, R.G.1
Iwashkiw, J.A.2
Scott, N.E.3
Seper, A.4
Vinogradov, E.5
Schild, S.6
-
33
-
-
84908136421
-
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
-
2533035
-
Abby SS, Neron B, Menager H, Touchon M, Rocha EP, MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems. PloS one. 2014;9(10):e110726. doi: 10.1371/journal.pone.0110726 25330359
-
(2014)
PloS one
, vol.9
, Issue.10
, pp. e110726
-
-
Abby, S.S.1
Neron, B.2
Menager, H.3
Touchon, M.4
Rocha, E.P.5
-
34
-
-
84873107819
-
Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria
-
Whitney JC, Howell PL, Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria. Trends Microbioly. 2013;21(2):63–72. doi: 10.1016/j.tim.2012.10.001.
-
(2013)
Trends Microbioly
, vol.21
, Issue.2
, pp. 63-72
-
-
Whitney, J.C.1
Howell, P.L.2
-
35
-
-
0009447935
-
-
. In:.,. Galveston (TX) University of Texas Medical Branch at Galvesto
-
Salton MRJ, Kim KS, Baron S, Structure. In: Medical Microbiology. 4rth ed.Galveston (TX),University of Texas Medical Branch at Galveston.1996.
-
(1996)
Medical Microbiology
-
-
Salton, M.R.J.1
Kim, K.S.2
Baron, S.3
-
36
-
-
84961176515
-
Identification of protein secretion systems in bacterial genomes
-
2697978
-
Abby SS, Cury J, Guglielmini J, Neron B, Touchon M, Rocha EP, Identification of protein secretion systems in bacterial genomes. Sci Rep. 2016;6:23080. doi: 10.1038/srep23080 26979785
-
(2016)
Sci Rep
, vol.6
, pp. 23080
-
-
Abby, S.S.1
Cury, J.2
Guglielmini, J.3
Neron, B.4
Touchon, M.5
Rocha, E.P.6
-
37
-
-
84992418589
-
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
-
2777498
-
Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, et al. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun. 2016;7:13219. doi: 10.1038/ncomms13219 27774985
-
(2016)
Nat Commun
, vol.7
, pp. 13219
-
-
Anantharaman, K.1
Brown, C.T.2
Hug, L.A.3
Sharon, I.4
Castelle, C.J.5
Probst, A.J.6
-
38
-
-
0026006330
-
DNA-DNA hybridization of methylotrophic halophilic methanogenic bacteria and transfer of Methanococcus halophilus vp to the genus Methanohalophilus as Methanohalophilus halophilus Comb-Nov
-
Wilharm T, Zhilina TN, Hummel P, DNA-DNA hybridization of methylotrophic halophilic methanogenic bacteria and transfer of Methanococcus halophilus vp to the genus Methanohalophilus as Methanohalophilus halophilus Comb-Nov. Int J Syst Bacteriol. 1991;41(4):558–62.
-
(1991)
Int J Syst Bacteriol
, vol.41
, Issue.4
, pp. 558-562
-
-
Wilharm, T.1
Zhilina, T.N.2
Hummel, P.3
-
39
-
-
54449098595
-
Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp nov., prevalent in Zoige wetland of the Tibetan plateau
-
1867669
-
Zhang GS, Jiang N, Liu XL, Dong XZ, Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp nov., prevalent in Zoige wetland of the Tibetan plateau. Appl Environ Microbiol2008;74(19):6114–20. doi: 10.1128/AEM.01146-08 18676698
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.19
, pp. 6114-6120
-
-
Zhang, G.S.1
Jiang, N.2
Liu, X.L.3
Dong, X.Z.4
-
40
-
-
0026099178
-
The cell envelope of the hyperthermophilic archaebacterium Pyrobacuium organotrophum consists of two regularly arrayed protem layers: three-dimensional structure of the outer layer
-
190412
-
Phipps BM, Huber R, Baumeister W, The cell envelope of the hyperthermophilic archaebacterium Pyrobacuium organotrophum consists of two regularly arrayed protem layers: three-dimensional structure of the outer layer. Mol Microbiol. 1991;5(2):253–65 1904123
-
(1991)
Mol Microbiol
, vol.5
, Issue.2
, pp. 253-265
-
-
Phipps, B.M.1
Huber, R.2
Baumeister, W.3
-
41
-
-
0036640350
-
Origin and fate of repeats in bacteria
-
1208718
-
Achaz G, Rocha EP, Netter P, Coissac E, Origin and fate of repeats in bacteria. Nucleic acids research. 2002;30(13):2987–94. 12087185
-
(2002)
Nucleic acids research
, vol.30
, Issue.13
, pp. 2987-2994
-
-
Achaz, G.1
Rocha, E.P.2
Netter, P.3
Coissac, E.4
-
42
-
-
84867364321
-
phytools: an R package for phylogenetic comparative biology (and other things)
-
Revell LJ, phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol Evol. 2012;3(2):217–23.
-
(2012)
Methods Ecol Evol
, vol.3
, Issue.2
, pp. 217-223
-
-
Revell, L.J.1
-
43
-
-
33646735054
-
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
-
1668563
-
Pagel M, Meade A, Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am Nat. 2006;167(6):808–25. doi: 10.1086/503444 16685633
-
(2006)
Am Nat
, vol.167
, Issue.6
, pp. 808-825
-
-
Pagel, M.1
Meade, A.2
-
44
-
-
84908116309
-
Comparative genome analysis identifies few traits unique to the Escherichia coli ST131 H30Rx clade and extensive mosaicism at the capsule locus
-
2526981
-
Alqasim A, Scheutz F, Zong Z, McNally A, Comparative genome analysis identifies few traits unique to the Escherichia coli ST131 H30Rx clade and extensive mosaicism at the capsule locus. BMC Genomics. 2014;15:830. doi: 10.1186/1471-2164-15-830 25269819
-
(2014)
BMC Genomics
, vol.15
, pp. 830
-
-
Alqasim, A.1
Scheutz, F.2
Zong, Z.3
McNally, A.4
-
45
-
-
84961711517
-
Genetic and life-history traits associated with the distribution of prophages in bacteria
-
2701500
-
Touchon M, Bernheim A, Rocha EP, Genetic and life-history traits associated with the distribution of prophages in bacteria. ISME J. 2016;10:2744–54. doi: 10.1038/ismej.2016.47 27015004
-
(2016)
ISME J
, vol.10
, pp. 2744-2754
-
-
Touchon, M.1
Bernheim, A.2
Rocha, E.P.3
-
46
-
-
76749155783
-
The systemic imprint of growth and its uses in ecological (meta)genomics
-
2009083
-
Vieira-Silva S, Rocha EP, The systemic imprint of growth and its uses in ecological (meta)genomics. PLoS Genet. 2010;6(1):e1000808. doi: 10.1371/journal.pgen.1000808 20090831
-
(2010)
PLoS Genet
, vol.6
, Issue.1
, pp. e1000808
-
-
Vieira-Silva, S.1
Rocha, E.P.2
-
47
-
-
84862767819
-
Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control
-
2256424
-
Brown SP, Cornforth DM, Mideo N, Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control. Trends Microbiol. 2012;20(7):336–42. doi: 10.1016/j.tim.2012.04.005 22564248
-
(2012)
Trends Microbiol
, vol.20
, Issue.7
, pp. 336-342
-
-
Brown, S.P.1
Cornforth, D.M.2
Mideo, N.3
-
48
-
-
84873181927
-
Bacterial pathogens: from natural ecosystems to human hosts
-
2285700
-
Martinez JL, Bacterial pathogens: from natural ecosystems to human hosts. Environ Microbiol. 2013;15(2):325–33. doi: 10.1111/j.1462-2920.2012.02837.x 22857004
-
(2013)
Environ Microbiol
, vol.15
, Issue.2
, pp. 325-333
-
-
Martinez, J.L.1
-
49
-
-
84860897139
-
Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens
-
2231944
-
Gama JA, Abby SS, Vieira-Silva S, Dionisio F, Rocha EP, Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens. Plos Pathog. 2012;8(2):e1002503. doi: 10.1371/journal.ppat.1002503 22319444
-
(2012)
Plos Pathog
, vol.8
, Issue.2
, pp. e1002503
-
-
Gama, J.A.1
Abby, S.S.2
Vieira-Silva, S.3
Dionisio, F.4
Rocha, E.P.5
-
50
-
-
85045967933
-
Identification of Klebsiella capsule synthesis loci from whole genome data
-
Dec, 2834884
-
Wyres K, Wick RR, Gorrie C, Jenney A, Follador R, Thomson NR, et al. Identification of Klebsiella capsule synthesis loci from whole genome data. Microb Genom. 2016Dec12;2(12):e000102. doi: 10.1099/mgen.0.000102 28348840.
-
(2016)
Microb Genom
, vol.2
, Issue.12
, pp. e000102
-
-
Wyres, K.1
Wick, R.R.2
Gorrie, C.3
Jenney, A.4
Follador, R.5
Thomson, N.R.6
-
51
-
-
84870032373
-
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria
-
2318914
-
Nogueira T, Touchon M, Rocha EP, Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria. PloS one. 2012;7(11):e49403. doi: 10.1371/journal.pone.0049403 23189144
-
(2012)
PloS one
, vol.7
, Issue.11
, pp. e49403
-
-
Nogueira, T.1
Touchon, M.2
Rocha, E.P.3
-
52
-
-
67650072705
-
Evidence for capsule switching between carried and disease-causing Neisseria meningitidis strains
-
1945124
-
Beddek AJ, Li MS, Kroll JS, Jordan TW, Martin DR, Evidence for capsule switching between carried and disease-causing Neisseria meningitidis strains. Infect Immun. 2009;77(7):2989–94. doi: 10.1128/IAI.00181-09 19451248
-
(2009)
Infect Immun
, vol.77
, Issue.7
, pp. 2989-2994
-
-
Beddek, A.J.1
Li, M.S.2
Kroll, J.S.3
Jordan, T.W.4
Martin, D.R.5
-
53
-
-
0031031696
-
Capsule switching of Neisseria meningitidis
-
899019
-
Swartley JS, Marfin AA, Edupuganti S, Liu LJ, Cieslak P, Perkins B, et al. Capsule switching of Neisseria meningitidis. PNAS. 1997;94(1):271–6. 8990198
-
(1997)
PNAS
, vol.94
, Issue.1
, pp. 271-276
-
-
Swartley, J.S.1
Marfin, A.A.2
Edupuganti, S.3
Liu, L.J.4
Cieslak, P.5
Perkins, B.6
-
54
-
-
84966781466
-
The bright side of microbial dark matter: lessons learned from the uncultivated majority
-
2719650
-
Solden L, Lloyd K, Wrighton K, The bright side of microbial dark matter: lessons learned from the uncultivated majority. Curr Opin Microbiol. 2016;31:217–26. doi: 10.1016/j.mib.2016.04.020 27196505
-
(2016)
Curr Opin Microbiol
, vol.31
, pp. 217-226
-
-
Solden, L.1
Lloyd, K.2
Wrighton, K.3
-
55
-
-
67650538066
-
Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont
-
1940352
-
Martens EC, Roth R, Heuser JE, Gordon JI, Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont. J Biol Chem. 2009;284(27):18445–57. doi: 10.1074/jbc.M109.008094 19403529
-
(2009)
J Biol Chem
, vol.284
, Issue.27
, pp. 18445-18457
-
-
Martens, E.C.1
Roth, R.2
Heuser, J.E.3
Gordon, J.I.4
-
56
-
-
0026774669
-
The capsular polysaccharide of Bacteroides fragilis comprises two ionically linked polysaccharides
-
151725
-
Tzianabos AO, Pantosti A, Baumann H, Brisson JR, Jennings HJ, Kasper DL, The capsular polysaccharide of Bacteroides fragilis comprises two ionically linked polysaccharides. J Biol Chem. 1992;267(25):18230–5. 1517250
-
(1992)
J Biol Chem
, vol.267
, Issue.25
, pp. 18230-18235
-
-
Tzianabos, A.O.1
Pantosti, A.2
Baumann, H.3
Brisson, J.R.4
Jennings, H.J.5
Kasper, D.L.6
-
57
-
-
0034978213
-
Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis
-
1140197
-
Coyne MJ, Tzianabos AO, Mallory BC, Carey VJ, Kasper DL, Comstock LE, Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis. Infect Immun. 2001;69(7):4342–50. doi: 10.1128/IAI.69.7.4342-4350.2001 11401972
-
(2001)
Infect Immun
, vol.69
, Issue.7
, pp. 4342-4350
-
-
Coyne, M.J.1
Tzianabos, A.O.2
Mallory, B.C.3
Carey, V.J.4
Kasper, D.L.5
Comstock, L.E.6
-
58
-
-
0042337387
-
Mpi recombinase globally modulates the surface architecture of a human commensal bacterium
-
1291573
-
Coyne MJ, Weinacht KG, Krinos CM, Comstock LE, Mpi recombinase globally modulates the surface architecture of a human commensal bacterium. PNAS. 2003;100(18):10446–51. doi: 10.1073/pnas.1832655100 12915735
-
(2003)
PNAS
, vol.100
, Issue.18
, pp. 10446-10451
-
-
Coyne, M.J.1
Weinacht, K.G.2
Krinos, C.M.3
Comstock, L.E.4
-
59
-
-
77951238012
-
Beneficial effects of Bacteroides fragilis polysaccharides on the immune system
-
Troy EB, Kasper DL, Beneficial effects of Bacteroides fragilis polysaccharides on the immune system. Front Biosci (Landmark Ed). 2010;15:25–34.
-
(2010)
Front Biosci (Landmark Ed)
, vol.15
, pp. 25-34
-
-
Troy, E.B.1
Kasper, D.L.2
-
60
-
-
84928914504
-
Capsules, toxins and AtxA as virulence factors of emerging Bacillus cereus biovar anthracis
-
2583037
-
Brezillon C, Haustant M, Dupke S, Corre JP, Lander A, Franz T, et al. Capsules, toxins and AtxA as virulence factors of emerging Bacillus cereus biovar anthracis. PLoS Negl Trop Dis. 2015;9(4):e0003455. doi: 10.1371/journal.pntd.0003455 25830379
-
(2015)
PLoS Negl Trop Dis
, vol.9
, Issue.4
, pp. e0003455
-
-
Brezillon, C.1
Haustant, M.2
Dupke, S.3
Corre, J.P.4
Lander, A.5
Franz, T.6
-
61
-
-
84926308364
-
Selective and genetic constraints on pneumococcal serotype switching
-
2582620
-
Croucher NJ, Kagedan L, Thompson CM, Parkhill J, Bentley SD, Finkelstein JA, et al. Selective and genetic constraints on pneumococcal serotype switching. PLoS Genet. 2015;11(3):e1005095. doi: 10.1371/journal.pgen.1005095 25826208
-
(2015)
PLoS Genet
, vol.11
, Issue.3
, pp. e1005095
-
-
Croucher, N.J.1
Kagedan, L.2
Thompson, C.M.3
Parkhill, J.4
Bentley, S.D.5
Finkelstein, J.A.6
-
62
-
-
84901627197
-
Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution
-
2478628
-
Mostowy R, Croucher NJ, Hanage WP, Harris SR, Bentley S, Fraser C, Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution. PLoS Genet. 2014;10(5):e1004300. doi: 10.1371/journal.pgen.1004300 24786281
-
(2014)
PLoS Genet
, vol.10
, Issue.5
, pp. e1004300
-
-
Mostowy, R.1
Croucher, N.J.2
Hanage, W.P.3
Harris, S.R.4
Bentley, S.5
Fraser, C.6
-
63
-
-
84941245487
-
Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258
-
Wyres KL, Gorrie C, Edwards DJ, Wertheim HF, Hsu LY, Van Kinh N, et al. Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258. Gen Biol Evol. 2015;7(5):1267–79. doi: 10.1093/gbe/evv062.
-
(2015)
Gen Biol Evol
, vol.7
, Issue.5
, pp. 1267-1279
-
-
Wyres, K.L.1
Gorrie, C.2
Edwards, D.J.3
Wertheim, H.F.4
Hsu, L.Y.5
Van Kinh, N.6
-
64
-
-
0029847554
-
Selfish operons: horizontal transfer may drive the evolution of gene clusters
-
884416
-
Lawrence JG, Roth JR, Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics. 1996;143(4):1843–60. 8844169
-
(1996)
Genetics
, vol.143
, Issue.4
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
65
-
-
85018944742
-
Capsular polysaccharide inhibits adhesion of Bifidobacterium longum 105-A to enterocyte-like Caco-2 cells and phagocytosis by macrophages
-
2846971
-
Tahoun A, Masutani H, El-Sharkawy H, Gillespie T, Honda RP, Kuwata K, et al. Capsular polysaccharide inhibits adhesion of Bifidobacterium longum 105-A to enterocyte-like Caco-2 cells and phagocytosis by macrophages. Gut Pathog. 2017;9:27. doi: 10.1186/s13099-017-0177-x 28469711
-
(2017)
Gut Pathog
, vol.9
, pp. 27
-
-
Tahoun, A.1
Masutani, H.2
El-Sharkawy, H.3
Gillespie, T.4
Honda, R.P.5
Kuwata, K.6
-
66
-
-
84855805898
-
Capsules from pathogenic and non-pathogenic Cryptococcus spp. manifest significant differences in structure and ability to protect against phagocytic cells
-
2225373
-
Araujo Gde S, Fonseca FL, Pontes B, Torres A, Cordero RJ, Zancope-Oliveira RM, et al. Capsules from pathogenic and non-pathogenic Cryptococcus spp. manifest significant differences in structure and ability to protect against phagocytic cells. PloS one. 2012;7(1):e29561. doi: 10.1371/journal.pone.0029561 22253734
-
(2012)
PloS one
, vol.7
, Issue.1
, pp. e29561
-
-
Araujo Gde, S.1
Fonseca, F.L.2
Pontes, B.3
Torres, A.4
Cordero, R.J.5
Zancope-Oliveira, R.M.6
-
67
-
-
77957856706
-
From grazing resistance to pathogenesis: the coincidental evolution of virulence factors
-
2071144
-
Adiba S, Nizak C, van Baalen M, Denamur E, Depaulis F, From grazing resistance to pathogenesis: the coincidental evolution of virulence factors. PloS one. 2010;5(8):e11882. doi: 10.1371/journal.pone.0011882 20711443
-
(2010)
PloS one
, vol.5
, Issue.8
, pp. e11882
-
-
Adiba, S.1
Nizak, C.2
van Baalen, M.3
Denamur, E.4
Depaulis, F.5
-
68
-
-
0037392230
-
Surface polysaccharide involvement in establishing the rhizobium-legume symbiosis
-
1265399
-
Fraysse N, Couderc F, Poinsot V, Surface polysaccharide involvement in establishing the rhizobium-legume symbiosis. Eur J Biochem. 2003;270(7):1365–80. 12653992
-
(2003)
Eur J Biochem
, vol.270
, Issue.7
, pp. 1365-1380
-
-
Fraysse, N.1
Couderc, F.2
Poinsot, V.3
-
69
-
-
0021989499
-
Habitat Association of Klebsiella Species
-
Bagley ST, Habitat Association of Klebsiella Species. Infect Cont Hosp Ep. 1985;6(2):52–8.
-
(1985)
Infect Cont Hosp Ep
, vol.6
, Issue.2
, pp. 52-58
-
-
Bagley, S.T.1
-
70
-
-
84883763448
-
Reservoirs of Acinetobacter baumannii outside the hospital and potential involvement in emerging human community-acquired infections
-
2367298
-
Eveillard M, Kempf M, Belmonte O, Pailhories H, Joly-Guillou ML, Reservoirs of Acinetobacter baumannii outside the hospital and potential involvement in emerging human community-acquired infections. Int J Infect Dis. 2013;17(10):e802–5. doi: 10.1016/j.ijid.2013.03.021 23672981
-
(2013)
Int J Infect Dis
, vol.17
, Issue.10
, pp. e802-e805
-
-
Eveillard, M.1
Kempf, M.2
Belmonte, O.3
Pailhories, H.4
Joly-Guillou, M.L.5
-
71
-
-
84898669814
-
Occurrence of an environmental Acinetobacter baumannii strain similar to a clinical isolate in paleosol from Croatia
-
Hrenovic J, Durn G, Goic-Barisic I, Kovacic A, Occurrence of an environmental Acinetobacter baumannii strain similar to a clinical isolate in paleosol from Croatia. Appl Env Microbiol. 2014;80(9):2860–6. doi: 10.1128/AEM.00312-14.
-
(2014)
Appl Env Microbiol
, vol.80
, Issue.9
, pp. 2860-2866
-
-
Hrenovic, J.1
Durn, G.2
Goic-Barisic, I.3
Kovacic, A.4
-
72
-
-
84870707661
-
Enterococci in the environment
-
Byappanahalli MN, Nevers MB, Korajkic A, Staley ZR, Harwood VJ, Enterococci in the environment. Microbiol Mol Bio R. 2012;76(4):685–706. doi: 10.1128/MMBR.00023-12.
-
(2012)
Microbiol Mol Bio R
, vol.76
, Issue.4
, pp. 685-706
-
-
Byappanahalli, M.N.1
Nevers, M.B.2
Korajkic, A.3
Staley, Z.R.4
Harwood, V.J.5
-
73
-
-
79952607170
-
-
.:;. p. New York, NY, USA Springe
-
Brenner DJ, Krieg NR, JT S, The Proteobacteria, Bergey's manual of systematic bacteriology. 2 ed.New York, NY, USA: Springer; 2005. 304 p.
-
(2005)
The Proteobacteria, Bergey's manual of systematic bacteriology
, pp. 304
-
-
Brenner, D.J.1
Krieg, N.R.2
Jt, S.3
-
74
-
-
0037326242
-
Transcriptional organization and regulation of the Escherichia coli K30 group 1 capsule biosynthesis (cps) gene cluster
-
1258135
-
Rahn A, Whitfield C, Transcriptional organization and regulation of the Escherichia coli K30 group 1 capsule biosynthesis (cps) gene cluster. Mol Microbiol2003;47(4):1045–60. 12581358
-
(2003)
Mol Microbiol
, vol.47
, Issue.4
, pp. 1045-1060
-
-
Rahn, A.1
Whitfield, C.2
-
75
-
-
4644246658
-
The pathogenicity island-associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536
-
Schneider G, Dobrindt U, Bruggemann H, Nagy G, Janke B, Blum-Oehler G, et al. The pathogenicity island-associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536. Infecti Immun. 2004;72(10):5993–6001.
-
(2004)
Infecti Immun
, vol.72
, Issue.10
, pp. 5993-6001
-
-
Schneider, G.1
Dobrindt, U.2
Bruggemann, H.3
Nagy, G.4
Janke, B.5
Blum-Oehler, G.6
-
76
-
-
43049168315
-
The genetic organisation of the capsule biosynthesis region of Actinobacillus pleuropneumoniae serotypes 1, 6, 7, and 12
-
1821547
-
Jessing SG, Ahrens P, Inzana TJ, Angen O, The genetic organisation of the capsule biosynthesis region of Actinobacillus pleuropneumoniae serotypes 1, 6, 7, and 12. Vet Microbiol. 2008;129(3–4):350–9. doi: 10.1016/j.vetmic.2007.12.003 18215476
-
(2008)
Vet Microbiol
, vol.129
, Issue.3-4
, pp. 350-359
-
-
Jessing, S.G.1
Ahrens, P.2
Inzana, T.J.3
Angen, O.4
-
77
-
-
79251510219
-
Francisella tularensis Schu S4 O-antigen and capsule biosynthesis gene mutants induce early cell death in human macrophages
-
2107886
-
Lindemann SR, Peng K, Long ME, Hunt JR, Apicella MA, Monack DM, et al. Francisella tularensis Schu S4 O-antigen and capsule biosynthesis gene mutants induce early cell death in human macrophages. Infect Immun. 2011;79(2):581–94. doi: 10.1128/IAI.00863-10 21078861
-
(2011)
Infect Immun
, vol.79
, Issue.2
, pp. 581-594
-
-
Lindemann, S.R.1
Peng, K.2
Long, M.E.3
Hunt, J.R.4
Apicella, M.A.5
Monack, D.M.6
-
78
-
-
84931271128
-
Characterization of Francisella tularensis Schu S4 mutants identified from a transposon library screened for O-antigen and capsule deficiencies
-
2599991
-
Rasmussen JA, Fletcher JR, Long ME, Allen LA, Jones BD, Characterization of Francisella tularensis Schu S4 mutants identified from a transposon library screened for O-antigen and capsule deficiencies. Front Microbiol. 2015;6:338. doi: 10.3389/fmicb.2015.00338 25999917
-
(2015)
Front Microbiol
, vol.6
, pp. 338
-
-
Rasmussen, J.A.1
Fletcher, J.R.2
Long, M.E.3
Allen, L.A.4
Jones, B.D.5
-
79
-
-
0028923105
-
Characterization of the cassette containing genes for type 3 capsular polysaccharide biosynthesis in Streptococcus pneumoniae
-
786905
-
Dillard JP, Vandersea MW, Yother J, Characterization of the cassette containing genes for type 3 capsular polysaccharide biosynthesis in Streptococcus pneumoniae. J Exp Med. 1995;181(3):973–83. 7869055
-
(1995)
J Exp Med
, vol.181
, Issue.3
, pp. 973-983
-
-
Dillard, J.P.1
Vandersea, M.W.2
Yother, J.3
-
80
-
-
84911406920
-
Transcription of the Streptococcus pyogenes hyaluronic acid capsule biosynthesis operon is regulated by previously unknown upstream elements
-
2528792
-
Falaleeva M, Zurek OW, Watkins RL, Reed RW, Ali H, Sumby P, et al. Transcription of the Streptococcus pyogenes hyaluronic acid capsule biosynthesis operon is regulated by previously unknown upstream elements. Infect Immun. 2014;82(12):5293–307. doi: 10.1128/IAI.02035-14 25287924
-
(2014)
Infect Immun
, vol.82
, Issue.12
, pp. 5293-5307
-
-
Falaleeva, M.1
Zurek, O.W.2
Watkins, R.L.3
Reed, R.W.4
Ali, H.5
Sumby, P.6
-
81
-
-
0024595710
-
Molecular characterization and protein analysis of the Cap region, which is essential for encapsulation in Bacillus anthracis
-
253667
-
Makino S, Uchida I, Terakado N, Sasakawa C, Yoshikawa M, Molecular characterization and protein analysis of the Cap region, which is essential for encapsulation in Bacillus anthracis. J Bacteriol. 1989;171(2):722–30. 2536679
-
(1989)
J Bacteriol
, vol.171
, Issue.2
, pp. 722-730
-
-
Makino, S.1
Uchida, I.2
Terakado, N.3
Sasakawa, C.4
Yoshikawa, M.5
-
82
-
-
0036134960
-
Characterization of the Bacillus subtilis ywsC gene, involved in gamma-polyglutamic acid production
-
1175180
-
Urushibata Y, Tokuyama S, Tahara Y, Characterization of the Bacillus subtilis ywsC gene, involved in gamma-polyglutamic acid production. J Bacteriol. 2002;184(2):337–43. doi: 10.1128/JB.184.2.337-343.2002 11751809
-
(2002)
J Bacteriol
, vol.184
, Issue.2
, pp. 337-343
-
-
Urushibata, Y.1
Tokuyama, S.2
Tahara, Y.3
-
83
-
-
27744595455
-
CapE, a 47-amino-acid peptide, is necessary for Bacillus anthracis polyglutamate capsule synthesis
-
1626730
-
Candela T, Mock M, Fouet A, CapE, a 47-amino-acid peptide, is necessary for Bacillus anthracis polyglutamate capsule synthesis. J Bacteriol. 2005;187(22):7765–72. doi: 10.1128/JB.187.22.7765-7772.2005 16267300
-
(2005)
J Bacteriol
, vol.187
, Issue.22
, pp. 7765-7772
-
-
Candela, T.1
Mock, M.2
Fouet, A.3
-
84
-
-
0345436064
-
A single gene (tts) located outside the cap locus directs the formation of Streptococcus pneumoniae type 37 capsular polysaccharide. Type 37 pneumococci are natural, genetically binary strains
-
1043228
-
Llull D, Munoz R, Lopez R, Garcia E, A single gene (tts) located outside the cap locus directs the formation of Streptococcus pneumoniae type 37 capsular polysaccharide. Type 37 pneumococci are natural, genetically binary strains. J Exp Med. 1999;190(2):241–51. 10432287
-
(1999)
J Exp Med
, vol.190
, Issue.2
, pp. 241-251
-
-
Llull, D.1
Munoz, R.2
Lopez, R.3
Garcia, E.4
-
85
-
-
29744464258
-
Identification and characterization of the capsular polysaccharide (K-antigen) locus of Porphyromonas gingivalis
-
1636900
-
Aduse-Opoku J, Slaney JM, Hashim A, Gallagher A, Gallagher RP, Rangarajan M, et al. Identification and characterization of the capsular polysaccharide (K-antigen) locus of Porphyromonas gingivalis. Infect Immun. 2006;74(1):449–60. doi: 10.1128/IAI.74.1.449-460.2006 16369001
-
(2006)
Infect Immun
, vol.74
, Issue.1
, pp. 449-460
-
-
Aduse-Opoku, J.1
Slaney, J.M.2
Hashim, A.3
Gallagher, A.4
Gallagher, R.P.5
Rangarajan, M.6
-
86
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
2159312
-
Finn RD, Clements J, Eddy SR, HMMER web server: interactive sequence similarity searching. NAR. 2011;39(Web Server issue):W29–37. doi: 10.1093/nar/gkr367 21593126
-
(2011)
NAR
, vol.39
, Issue.Web Server issue
, pp. W29-37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
87
-
-
0030925920
-
Pfam: a comprehensive database of protein domain families based on seed alignments
-
922318
-
Sonnhammer EL, Eddy SR, Durbin R, Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins. 1997;28(3):405–20. 9223186
-
(1997)
Proteins
, vol.28
, Issue.3
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
88
-
-
3242876311
-
BLAST: at the core of a powerful and diverse set of sequence analysis tools
-
1521534
-
McGinnis S, Madden TL, BLAST: at the core of a powerful and diverse set of sequence analysis tools. NAR. 2004;32:W20–W5. doi: 10.1093/nar/gkh435 15215342
-
(2004)
NAR
, vol.32
, pp. W20-W25
-
-
McGinnis, S.1
Madden, T.L.2
-
89
-
-
79955013072
-
Ultra-fast sequence clustering from similarity networks with SiLiX
-
2151351
-
Miele V, Penel S, Duret L, Ultra-fast sequence clustering from similarity networks with SiLiX. BMC bioinformatics. 2011;12:116. doi: 10.1186/1471-2105-12-116 21513511
-
(2011)
BMC bioinformatics
, vol.12
, pp. 116
-
-
Miele, V.1
Penel, S.2
Duret, L.3
-
90
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
2332969
-
Katoh K, Standley DM, MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772–80. doi: 10.1093/molbev/mst010 23329690
-
(2013)
Mol Biol Evol
, vol.30
, Issue.4
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
91
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
902127
-
Galtier N, Gouy M, Gautier C, SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci. 1996;12(6):543–8. 9021275
-
(1996)
Comput Appl Biosci
, vol.12
, Issue.6
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
92
-
-
84985894886
-
The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences
-
2531301
-
Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, et al. The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. Genome Biol Evol. 2014;6(10):2866–82. doi: 10.1093/gbe/evu225 25313016
-
(2014)
Genome Biol Evol
, vol.6
, Issue.10
, pp. 2866-2882
-
-
Touchon, M.1
Cury, J.2
Yoon, E.J.3
Krizova, L.4
Cerqueira, G.C.5
Murphy, C.6
-
93
-
-
33244455720
-
Inference and analysis of the relative stability of bacterial chromosomes
-
1628054
-
Rocha EP, Inference and analysis of the relative stability of bacterial chromosomes. Mol Biol Evol. 2006;23(3):513–22. doi: 10.1093/molbev/msj052 16280545
-
(2006)
Mol Biol Evol
, vol.23
, Issue.3
, pp. 513-522
-
-
Rocha, E.P.1
-
95
-
-
67650757433
-
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
-
1950594
-
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T, trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009;25(15):1972–3. doi: 10.1093/bioinformatics/btp348 19505945
-
(2009)
Bioinformatics
, vol.25
, Issue.15
, pp. 1972-1973
-
-
Capella-Gutierrez, S.1
Silla-Martinez, J.M.2
Gabaldon, T.3
-
96
-
-
84922362345
-
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
-
2537143
-
Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ, IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32(1):268–74. doi: 10.1093/molbev/msu300 25371430
-
(2015)
Mol Biol Evol
, vol.32
, Issue.1
, pp. 268-274
-
-
Nguyen, L.T.1
Schmidt, H.A.2
von Haeseler, A.3
Minh, B.Q.4
-
97
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo A, Gribaldo S, BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evo Biol. 2010;10:210.
-
(2010)
BMC Evo Biol
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
98
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
1473432
-
Paradis E, Claude J, Strimmer K, APE: Analyses of phylogenetics and evolution in R language. Bioinformatics. 2004;20(2):289–90. 10.1093/bioinformatics/btg412. 14734327
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
99
-
-
85014768147
-
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
-
2709519
-
Letunic I, Bork P, Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. NAR. 2016;44(W1):W242–5. doi: 10.1093/nar/gkw290 27095192
-
(2016)
NAR
, vol.44
, Issue.W1
, pp. W242-W245
-
-
Letunic, I.1
Bork, P.2
-
100
-
-
85026864424
-
-
Pohlert T. The Pairwise Multiple Comparison of Mean Ranks Package (PMCMR). R package 2014.
-
(2014)
-
-
Pohlert, T.1
-
101
-
-
85026853733
-
-
Ogle D. NCStats: Helper Functions for Statistics at Northland College. R packag
-
Ogle D. NCStats: Helper Functions for Statistics at Northland College. R package
-
-
-
|