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Volumn 7, Issue 5, 2015, Pages 1267-1279

Extensive capsule locus variation and large-scale genomic recombination within the Klebsiella pneumoniae clonal group 258

Author keywords

Carbapenemase; Cps; Evolution; Genome; Klebsiella; ST258

Indexed keywords

BACTERIAL CAPSULE; BACTERIAL GENOME; CLASSIFICATION; GENE LOCUS; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; GENOMICS; KLEBSIELLA PNEUMONIAE; MOLECULAR EVOLUTION; PHYLOGENY;

EID: 84941245487     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv062     Document Type: Article
Times cited : (82)

References (71)
  • 2
    • 0023575865 scopus 로고
    • The role of capsular polysaccharide K21b of Klebsiella and of the structurally related colanic-acid polysaccharide of Escherichia coli in resistance to phagocytosis and serum killing
    • Allen PM, Fisher D, Saunders JR, Hart CA. 1987. The role of capsular polysaccharide K21b of Klebsiella and of the structurally related colanic-acid polysaccharide of Escherichia coli in resistance to phagocytosis and serum killing. J Med Microbiol. 24:363-370.
    • (1987) J Med Microbiol. , vol.24 , pp. 363-370
    • Allen, P.M.1    Fisher, D.2    Saunders, J.R.3    Hart, C.A.4
  • 3
    • 84908116309 scopus 로고    scopus 로고
    • Comparative genome analysis identifies few traits unique to the Escherichia coli ST131 H30Rx clade and extensive mosaicism at the capsule locus
    • Alqasim A, Scheutz F, Zong Z, McNally A. 2014. Comparative genome analysis identifies few traits unique to the Escherichia coli ST131 H30Rx clade and extensive mosaicism at the capsule locus. BMC Genomics 15:830.
    • (2014) BMC Genomics , vol.15 , pp. 830
    • Alqasim, A.1    Scheutz, F.2    Zong, Z.3    McNally, A.4
  • 4
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich A, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455-477.
    • (2012) J Comput Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1
  • 5
    • 84908087779 scopus 로고    scopus 로고
    • Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
    • Bialek-Davenet S, et al. 2014. Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg Infect Dis. 20:1812-1820.
    • (2014) Emerg Infect Dis. , vol.20 , pp. 1812-1820
    • Bialek-Davenet, S.1
  • 6
    • 77953002425 scopus 로고    scopus 로고
    • Global, regional, and national causes of child mortality in 2008: A systematic analysis
    • Black RE, et al. 2010. Global, regional, and national causes of child mortality in 2008: a systematic analysis. Lancet 375:1969-1987.
    • (2010) Lancet , vol.375 , pp. 1969-1987
    • Black, R.E.1
  • 7
    • 3843055808 scopus 로고    scopus 로고
    • Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster
    • Brisse S, Issenhuth-Jeanjean S, Grimont PA. 2004. Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster. J Clin Microbiol. 42:3388-3398.
    • (2004) J Clin Microbiol. , vol.42 , pp. 3388-3398
    • Brisse, S.1    Issenhuth-Jeanjean, S.2    Grimont, P.A.3
  • 8
    • 84889784380 scopus 로고    scopus 로고
    • Wzi gene sequencing, a rapid method for determination of capsular type for Klebsiella strains
    • Brisse S, et al. 2013. wzi gene sequencing, a rapid method for determination of capsular type for Klebsiella strains. J Clin Microbiol. 51:4073-4078.
    • (2013) J Clin Microbiol. , vol.51 , pp. 4073-4078
    • Brisse, S.1
  • 9
    • 0029812756 scopus 로고    scopus 로고
    • Immunogenicity of a 24-valent Klebsiella capsular polysaccharide vaccine and an eightvalent Pseudomonas O-polysaccharide conjugate vaccine administered to victims of acute trauma
    • Campbell WN, Hendrix E, Cryz S, Cross AS. 1996. Immunogenicity of a 24-valent Klebsiella capsular polysaccharide vaccine and an eightvalent Pseudomonas O-polysaccharide conjugate vaccine administered to victims of acute trauma. Clin Infect Dis. 23:179-181.
    • (1996) Clin Infect Dis. , vol.23 , pp. 179-181
    • Campbell, W.N.1    Hendrix, E.2    Cryz, S.3    Cross, A.S.4
  • 10
    • 24044433279 scopus 로고    scopus 로고
    • ACT: The artemis comparison tool
    • Carver TJ, et al. 2005. ACT: the Artemis Comparison Tool. Bioinformatics 21:3422-3423.
    • (2005) Bioinformatics , vol.21 , pp. 3422-3423
    • Carver, T.J.1
  • 11
    • 77954442165 scopus 로고    scopus 로고
    • Detection of Enterobacteriaceae isolates carrying metallo-beta-lactamase-United States, 2010
    • Centers for Disease Control and Prevention. 2010. Detection of Enterobacteriaceae isolates carrying metallo-beta-lactamase-United States, 2010. MMWR Morb Mortal Wkly Rep. 59:750.
    • (2010) MMWR Morb Mortal Wkly Rep. , vol.59 , pp. 750
    • Centers for Disease Control and Prevention1
  • 12
  • 13
    • 84880764577 scopus 로고    scopus 로고
    • National surveillance study on carbapenem non-susceptible Klebsiella pneumoniae in Taiwan: The emergence and rapid dissemination of KPC-2 carbapenemase
    • Chiu SK, et al. 2013. National surveillance study on carbapenem non-susceptible Klebsiella pneumoniae in Taiwan: the emergence and rapid dissemination of KPC-2 carbapenemase. PLoS One 8:e69428.
    • (2013) PLoS One , vol.8 , pp. e69428
    • Chiu, S.K.1
  • 14
    • 56849109626 scopus 로고    scopus 로고
    • The major surface-associated saccharides of Klebsiella pneumoniae contribute to host cell association
    • Clements A, et al. 2008. The major surface-associated saccharides of Klebsiella pneumoniae contribute to host cell association. PLoS One 3:e3817.
    • (2008) PLoS One , vol.3 , pp. e3817
    • Clements, A.1
  • 15
    • 84908255395 scopus 로고    scopus 로고
    • The emergence of bacterial "hopeful monsters"
    • Croucher NJ, Klugman KP. 2014. The emergence of bacterial "hopeful monsters." MBio 5:e01550-01514.
    • (2014) MBio , vol.5 , pp. e01550-e001514
    • Croucher, N.J.1    Klugman, K.P.2
  • 16
    • 84901258333 scopus 로고    scopus 로고
    • Diversity of capsular polysaccharide gene clusters in Kpc-producing Klebsiella pneumoniae clinical isolates of sequence type 258 involved in the Italian epidemic
    • D'Andrea MM, et al. 2014. Diversity of capsular polysaccharide gene clusters in Kpc-producing Klebsiella pneumoniae clinical isolates of sequence type 258 involved in the Italian epidemic. PLoS One 9:e96827.
    • (2014) PLoS One , vol.9 , pp. e96827
    • D'Andrea, M.M.1
  • 17
    • 84897487143 scopus 로고    scopus 로고
    • Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae
    • Deleo FR, et al. 2014. Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc Natl Acad Sci USA. 111:4988-4993.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 4988-4993
    • Deleo, F.R.1
  • 18
    • 84901282068 scopus 로고    scopus 로고
    • Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits
    • Diago-Navarro E, et al. 2014. Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits. J Infect Dis. 210:803-13.
    • (2014) J Infect Dis. , vol.210 , pp. 803-813
    • Diago-Navarro, E.1
  • 20
    • 0030953719 scopus 로고    scopus 로고
    • Polymorphism, duplication, and IS1-mediated rearrangement in the chromosomal his-rfb-gnd region of Escherichia coli strains with group IA and capsular K antigens
    • Drummelsmith J, Amor PA, Whitfield C. 1997. Polymorphism, duplication, and IS1-mediated rearrangement in the chromosomal his-rfb-gnd region of Escherichia coli strains with group IA and capsular K antigens. J Bacteriol. 179:3232-3238.
    • (1997) J Bacteriol. , vol.179 , pp. 3232-3238
    • Drummelsmith, J.1    Amor, P.A.2    Whitfield, C.3
  • 21
    • 34447556762 scopus 로고    scopus 로고
    • Interspecies spread of CTX-M-32 extendedspectrum beta-lactamase and the role of the insertion sequence IS1 in down-regulating bla CTX-M gene expression
    • Fernández A, et al. 2007. Interspecies spread of CTX-M-32 extendedspectrum beta-lactamase and the role of the insertion sequence IS1 in down-regulating bla CTX-M gene expression. J Antimicrob Chemother. 59:841-847.
    • (2007) J Antimicrob Chemother. , vol.59 , pp. 841-847
    • Fernández, A.1
  • 22
    • 84920154702 scopus 로고    scopus 로고
    • Genomic epidemiology of Klebsiella pneumoniae in Italy and novel insights into the origin and global evolution of its resistance to carbapenem antibiotics
    • Gaiarsa S, et al. 2015. Genomic epidemiology of Klebsiella pneumoniae in Italy and novel insights into the origin and global evolution of its resistance to carbapenem antibiotics. Antimicrob Agents Chemother. 59:389-396.
    • (2015) Antimicrob Agents Chemother. , vol.59 , pp. 389-396
    • Gaiarsa, S.1
  • 23
    • 84857655371 scopus 로고    scopus 로고
    • Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
    • Golubchik T, et al. 2012. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat Genet. 44:352-355.
    • (2012) Nat Genet. , vol.44 , pp. 352-355
    • Golubchik, T.1
  • 24
    • 80053063330 scopus 로고    scopus 로고
    • Clonal dissemination of Klebsiella pneumoniae ST258 harbouring KPC-2 in Argentina
    • Gomez SA, et al. 2011. Clonal dissemination of Klebsiella pneumoniae ST258 harbouring KPC-2 in Argentina. Clin Microbiol Infect. 17:1520-1524.
    • (2011) Clin Microbiol Infect. , vol.17 , pp. 1520-1524
    • Gomez, S.A.1
  • 25
    • 84865683817 scopus 로고    scopus 로고
    • Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
    • Holt KE, et al. 2012. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet. 44:1056-1059.
    • (2012) Nat Genet. , vol.44 , pp. 1056-1059
    • Holt, K.E.1
  • 26
    • 0028903149 scopus 로고
    • Relationships among capsular structure, phagocytosis, and mouse virulence in Klebsiella pneumoniae
    • Kabha K, et al. 1995. Relationships among capsular structure, phagocytosis, and mouse virulence in Klebsiella pneumoniae. Infect Immun. 63:847-852.
    • (1995) Infect Immun. , vol.63 , pp. 847-852
    • Kabha, K.1
  • 27
    • 84896392107 scopus 로고    scopus 로고
    • Short communication: Comparison of virulence factors in Klebsiella pneumoniae strains associated with multiple or single cases of mastitis
    • Kanevsky-Mullarky I, et al. 2014. Short communication: comparison of virulence factors in Klebsiella pneumoniae strains associated with multiple or single cases of mastitis. J Dairy Sci. 97:2213-2218.
    • (2014) J Dairy Sci. , vol.97 , pp. 2213-2218
    • Kanevsky-Mullarky, I.1
  • 28
    • 84876168888 scopus 로고    scopus 로고
    • Variation in the complex carbohydrate biosynthesis loci of Acinetobacter baumannii genomes
    • Kenyon JJ, Hall RM. 2013. Variation in the complex carbohydrate biosynthesis loci of Acinetobacter baumannii genomes. PLoS One 8:e62160.
    • (2013) PLoS One , vol.8 , pp. e62160
    • Kenyon, J.J.1    Hall, R.M.2
  • 29
    • 67749143997 scopus 로고    scopus 로고
    • Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: Clonal expansion of multilocus sequence type 258
    • Kitchel B, et al. 2009. Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother. 53:3365-3370.
    • (2009) Antimicrob Agents Chemother. , vol.53 , pp. 3365-3370
    • Kitchel, B.1
  • 30
    • 77954463665 scopus 로고    scopus 로고
    • Predominance of an ST11 extended-spectrum betalactamase-producing Klebsiella pneumoniae clone causing bacteraemia and urinary tract infections in Korea
    • Ko KS, et al. 2010. Predominance of an ST11 extended-spectrum betalactamase-producing Klebsiella pneumoniae clone causing bacteraemia and urinary tract infections in Korea. J Med Microbiol. 59:822-828.
    • (2010) J Med Microbiol. , vol.59 , pp. 822-828
    • Ko, K.S.1
  • 31
    • 0033584053 scopus 로고    scopus 로고
    • Carbapenem-hydrolysing IMP-1 beta-lactamase in Klebsiella pneumoniae from Singapore
    • Koh TH, et al. 1999. Carbapenem-hydrolysing IMP-1 beta-lactamase in Klebsiella pneumoniae from Singapore. Lancet 353:2162.
    • (1999) Lancet , vol.353 , pp. 2162
    • Koh, T.H.1
  • 32
    • 84887955603 scopus 로고    scopus 로고
    • Acquired carbapenemases in Enterobactericeae in Singapore, 1996-2012
    • Koh TH, et al. 2013. Acquired carbapenemases in Enterobactericeae in Singapore, 1996-2012. Pathology 45:600-603.
    • (2013) Pathology , vol.45 , pp. 600-603
    • Koh, T.H.1
  • 33
    • 84872815761 scopus 로고    scopus 로고
    • The capsular polysaccharide and lipopolysaccharide structures of two carbapenem resistant Klebsiella pneumoniae outbreak isolates
    • Kubler-Kielb J, et al. 2013. The capsular polysaccharide and lipopolysaccharide structures of two carbapenem resistant Klebsiella pneumoniae outbreak isolates. Carbohydr Res. 369:6-9.
    • (2013) Carbohydr Res. , vol.369 , pp. 6-9
    • Kubler-Kielb, J.1
  • 34
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9:357-359.
    • (2012) Nat Methods. , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 35
    • 84857477622 scopus 로고    scopus 로고
    • Inference of population structure using dense haplotype data
    • Lawson DJ, Hellenthal G, Myers S, Falush D. 2012. Inference of population structure using dense haplotype data. PLoS Genet. 8:e1002453.
    • (2012) PLoS Genet. , vol.8 , pp. e1002453
    • Lawson, D.J.1    Hellenthal, G.2    Myers, S.3    Falush, D.4
  • 36
    • 84906568724 scopus 로고    scopus 로고
    • Sialic acid involved in hypermucoviscosity phenotype of Klebsiella pneumoniae and associated with resistance to neutrophil phagocytosis
    • Lee CH, Chang CC, Liu JW, Chen RF, Yang KD. 2014. Sialic acid involved in hypermucoviscosity phenotype of Klebsiella pneumoniae and associated with resistance to neutrophil phagocytosis. Virulence 5:673-679.
    • (2014) Virulence , vol.5 , pp. 673-679
    • Lee, C.H.1    Chang, C.C.2    Liu, J.W.3    Chen, R.F.4    Yang, K.D.5
  • 37
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 38
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li H, et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 39
    • 84872347766 scopus 로고    scopus 로고
    • Epidemic of Klebsiella pneumoniae ST11 clone coproducing KPC-2 and 16S rRNA methylase RmtB in a Chinese University Hospital
    • Li JJ, et al. 2012. Epidemic of Klebsiella pneumoniae ST11 clone coproducing KPC-2 and 16S rRNA methylase RmtB in a Chinese University Hospital. BMC Infect Dis. 12:373.
    • (2012) BMC Infect Dis. , vol.12 , pp. 373
    • Li, J.J.1
  • 40
    • 84921902484 scopus 로고    scopus 로고
    • Isolation of a bacteriophage and its depolymerase specific for K1 capsule of Klebsiella pneumoniae: Implication in typing and treatment
    • Lin TL, et al. 2014. Isolation of a bacteriophage and its depolymerase specific for K1 capsule of Klebsiella pneumoniae: implication in typing and treatment. J Infect Dis. 210:1734-44.
    • (2014) J Infect Dis. , vol.210 , pp. 1734-1744
    • Lin, T.L.1
  • 41
    • 84860351916 scopus 로고    scopus 로고
    • Complete genome sequence of Klebsiella pneumoniae subsp pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum
    • Liu P, et al. 2012. Complete genome sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum. J Bacteriol. 194:1841-1842.
    • (2012) J Bacteriol. , vol.194 , pp. 1841-1842
    • Liu, P.1
  • 42
    • 55649115992 scopus 로고    scopus 로고
    • Bayesian modeling of recombination events in bacterial populations
    • Marttinen P, et al. 2008. Bayesian modeling of recombination events in bacterial populations. BMC Bioinformatics 9:421.
    • (2008) BMC Bioinformatics , vol.9 , pp. 421
    • Marttinen, P.1
  • 43
    • 84855261123 scopus 로고    scopus 로고
    • Detection of recombination events in bacterial genomes from large population samples
    • Marttinen P, et al. 2012. Detection of recombination events in bacterial genomes from large population samples. Nucleic Acids Res. 40:e6.
    • (2012) Nucleic Acids Res. , vol.40 , pp. e6
    • Marttinen, P.1
  • 44
    • 77349090421 scopus 로고    scopus 로고
    • Klebsiella pneumoniae capsule polysaccharide impedes the expression of beta-defensins by airway epithelial cells
    • Moranta D, et al. 2010. Klebsiella pneumoniae capsule polysaccharide impedes the expression of beta-defensins by airway epithelial cells. Infect Immun. 78:1135-1146.
    • (2010) Infect Immun. , vol.78 , pp. 1135-1146
    • Moranta, D.1
  • 45
    • 84882712084 scopus 로고    scopus 로고
    • Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases
    • Munoz-Price LS, et al. 2013. Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases. Lancet Infect Dis. 13:785-796.
    • (2013) Lancet Infect Dis. , vol.13 , pp. 785-796
    • Munoz-Price, L.S.1
  • 46
    • 11244356885 scopus 로고    scopus 로고
    • Overexpression of the multidrug efflux operon acrEF by insertional activation with IS1 or IS10 elements in Salmonella enterica serovar typhimurium DT204 acrB mutants selected with fluoroquinolones
    • Olliver A, Vallé M, Chaslus-Dancla E, Cloeckaert A. 2005. Overexpression of the multidrug efflux operon acrEF by insertional activation with IS1 or IS10 elements in Salmonella enterica serovar typhimurium DT204 acrB mutants selected with fluoroquinolones. Antimicrob Agents Chemother. 49:289-301.
    • (2005) Antimicrob Agents Chemother. , vol.49 , pp. 289-301
    • Olliver, A.1    Vallé, M.2    Chaslus-Dancla, E.3    Cloeckaert, A.4
  • 47
    • 27944510953 scopus 로고    scopus 로고
    • Postvaccine genetic structure of Streptococcus pneumoniae serotype 19A from children in the United States
    • Pai R, et al. 2005. Postvaccine genetic structure of Streptococcus pneumoniae serotype 19A from children in the United States. J Infect Dis. 192:1988-1995.
    • (2005) J Infect Dis. , vol.192 , pp. 1988-1995
    • Pai, R.1
  • 48
    • 49049111855 scopus 로고    scopus 로고
    • Capsular polysaccharide synthesis regions in Klebsiella pneumoniae serotype K57 and a new capsular serotype
    • Pan YJ, et al. 2008. Capsular polysaccharide synthesis regions in Klebsiella pneumoniae serotype K57 and a new capsular serotype. J Clin Microbiol. 46:2231-2240.
    • (2008) J Clin Microbiol. , vol.46 , pp. 2231-2240
    • Pan, Y.J.1
  • 49
    • 84892583606 scopus 로고    scopus 로고
    • Capsular types of Klebsiella pneumoniae revisited by wzc sequencing
    • Pan YJ, et al. 2013. Capsular types of Klebsiella pneumoniae revisited by wzc sequencing. PLoS One 8:e80670.
    • (2013) PLoS One , vol.8 , pp. e80670
    • Pan, Y.J.1
  • 50
    • 84872399178 scopus 로고    scopus 로고
    • Update of the molecular epidemiology of KPC-2-producing Klebsiella pneumoniae in Brazil: Spread of clonal complex 11 (ST11, ST437 and ST340)
    • Pereira PS, et al. 2013. Update of the molecular epidemiology of KPC-2-producing Klebsiella pneumoniae in Brazil: spread of clonal complex 11 (ST11, ST437 and ST340). J Antimicrob Chemother. 68:312-316.
    • (2013) J Antimicrob Chemother. , vol.68 , pp. 312-316
    • Pereira, P.S.1
  • 51
    • 0031792165 scopus 로고    scopus 로고
    • Klebsiella spp as nosocomial pathogens: Epidemiology, taxonomy, typing methods, and pathogenicity factors
    • Podschun R, Ullmann U. 1998. Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin Microbiol Rev 11:589-603.
    • (1998) Clin Microbiol Rev , vol.11 , pp. 589-603
    • Podschun, R.1    Ullmann, U.2
  • 52
    • 0032963804 scopus 로고    scopus 로고
    • Conserved organization in the cps gene clusters for expression of Escherichia coli group 1 K antigens: Relationship to the colanic acid biosynthesis locus and the cps genes from Klebsiella pneumoniae
    • Rahn A, Drummelsmith J, Whitfield C. 1999. Conserved organization in the cps gene clusters for expression of Escherichia coli group 1 K antigens: relationship to the colanic acid biosynthesis locus and the cps genes from Klebsiella pneumoniae. J Bacteriol. 181:2307-2713.
    • (1999) J Bacteriol. , vol.181 , pp. 2307-2713
    • Rahn, A.1    Drummelsmith, J.2    Whitfield, C.3
  • 53
    • 84864801473 scopus 로고    scopus 로고
    • Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil
    • Ramos PI, et al. 2012. Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil. BMC Microbiol. 12:173.
    • (2012) BMC Microbiol. , vol.12 , pp. 173
    • Ramos, P.I.1
  • 54
    • 84864599465 scopus 로고    scopus 로고
    • KPC-mediated resistance in Klebsiella pneumoniae in two hospitals in Padua, Italy, June 2009-December 2011: Massive spreading of a KPC-3-encoding plasmid and involvement of non-intensive care units
    • Richter SN, et al. 2012. KPC-mediated resistance in Klebsiella pneumoniae in two hospitals in Padua, Italy, June 2009-December 2011: massive spreading of a KPC-3-encoding plasmid and involvement of non-intensive care units. Gut Pathog. 4:7.
    • (2012) Gut Pathog. , vol.4 , pp. 7
    • Richter, S.N.1
  • 55
    • 0033635022 scopus 로고    scopus 로고
    • Artemis: Sequence visualization and annotation
    • Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
    • (2000) Bioinformatics , vol.16 , pp. 944-945
    • Rutherford, K.1
  • 56
    • 0026502127 scopus 로고
    • IS5: A mobile enhancer of transcription in Escherichia coli
    • Schnetz K, Rak B. 1992. IS5: a mobile enhancer of transcription in Escherichia coli. Proc Natl Acad Sci USA. 89:1244-1248.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 1244-1248
    • Schnetz, K.1    Rak, B.2
  • 57
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: Rapid prokaryotic genome annotation
    • Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068-9.
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1
  • 58
    • 79955973511 scopus 로고    scopus 로고
    • Molecular epidemiology of KPC-2-producing Klebsiella pneumoniae isolates in Brazil: The predominance of sequence type 437
    • Seki LM, et al. 2011. Molecular epidemiology of KPC-2-producing Klebsiella pneumoniae isolates in Brazil: the predominance of sequence type 437. Diagn Microbiol Infect Dis. 70:274-277.
    • (2011) Diagn Microbiol Infect Dis. , vol.70 , pp. 274-277
    • Seki, L.M.1
  • 59
    • 71449115272 scopus 로고    scopus 로고
    • Genetic diversity of capsular polysaccharide biosynthesis in Klebsiella pneumoniae clinical isolates
    • Shu HY, et al. 2009. Genetic diversity of capsular polysaccharide biosynthesis in Klebsiella pneumoniae clinical isolates. Microbiology 155:4170-4183.
    • (2009) Microbiology , vol.155 , pp. 4170-4183
    • Shu, H.Y.1
  • 60
    • 84865323065 scopus 로고    scopus 로고
    • Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
    • Snitkin ES, et al. 2012. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med. 4:148ra116.
    • (2012) Sci Transl Med. , vol.4 , pp. 148ra116
    • Snitkin, E.S.1
  • 61
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 62
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 63
    • 84884258175 scopus 로고    scopus 로고
    • KPC-producing, multidrug-resistant Klebsiella pneumoniae sequence type 258 as a typical opportunistic pathogen
    • Tzouvelekis LS, et al. 2013. KPC-producing, multidrug-resistant Klebsiella pneumoniae sequence type 258 as a typical opportunistic pathogen. Antimicrob Agents Chemother. 57:5144-5146.
    • (2013) Antimicrob Agents Chemother. , vol.57 , pp. 5144-5146
    • Tzouvelekis, L.S.1
  • 64
    • 45149091798 scopus 로고    scopus 로고
    • A generic mechanism in Neisseria meningitidis for enhanced resistance against bactericidal antibodies
    • Uria MJ, et al. 2008. A generic mechanism in Neisseria meningitidis for enhanced resistance against bactericidal antibodies. J Exp Med. 205:1423-1434.
    • (2008) J Exp Med. , vol.205 , pp. 1423-1434
    • Uria, M.J.1
  • 66
    • 9644265318 scopus 로고    scopus 로고
    • Outbreak of Klebsiella pneumoniae producing a new carbapenem-hydrolyzing class A beta-lactamase, KPC-3, in a New York Medical Center
    • Woodford N, et al. 2004. Outbreak of Klebsiella pneumoniae producing a new carbapenem-hydrolyzing class A beta-lactamase, KPC-3, in a New York Medical Center. Antimicrob Agents Chemother. 48:4793-4799.
    • (2004) Antimicrob Agents Chemother. , vol.48 , pp. 4793-4799
    • Woodford, N.1
  • 68
    • 84905400726 scopus 로고    scopus 로고
    • Population structure of KPC-producing Klebsiella pneumoniae from Midwestern US hospitals
    • Wright MS, et al. 2014. Population structure of KPC-producing Klebsiella pneumoniae from Midwestern US hospitals. Antimicrob Agents Chemother. 58:4961-5.
    • (2014) Antimicrob Agents Chemother. , vol.58 , pp. 4961-4965
    • Wright, M.S.1
  • 69
    • 84938334904 scopus 로고    scopus 로고
    • Genome sequences of two Klebsiella pneumoniae isolates from different geographical regions, Argentina (strain JHCK1) and the United States (strain VA360)
    • Xie G, et al. 2013. Genome sequences of two Klebsiella pneumoniae isolates from different geographical regions, Argentina (strain JHCK1) and the United States (strain VA360). Genome Announc. 1:e00168-00113.
    • (2013) Genome Announc. , vol.1 , pp. e00168-e00113
    • Xie, G.1
  • 70
    • 84885481513 scopus 로고    scopus 로고
    • A nosocomial outbreak of KPC-2-producing Klebsiella pneumoniae in a Chinese hospital: Dissemination of ST11 and emergence of ST37, ST392 and ST395
    • Yang J, et al. 2013. A nosocomial outbreak of KPC-2-producing Klebsiella pneumoniae in a Chinese hospital: dissemination of ST11 and emergence of ST37, ST392 and ST395. Clin Microbiol Infect. 19:E509-E515.
    • (2013) Clin Microbiol Infect. , vol.19 , pp. E509-E515
    • Yang, J.1
  • 71
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


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