-
1
-
-
84901357361
-
Toward better drug repositioning: Prioritizing and integrating existing methods into efficient pipelines
-
May
-
G. Jin and S. T. C. Wong, Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines, Drug Discovery Today 19, 637 (May 2014).
-
(2014)
Drug Discovery Today
, vol.19
, pp. 637
-
-
Jin, G.1
Wong, S.T.C.2
-
2
-
-
84963553689
-
In silico methods for drug repurposing and pharmacology
-
May
-
R. A. Hodos, B. A. Kidd, K. Shameer, B. P. Readhead and J. T. Dudley, In silico methods for drug repurposing and pharmacology, Wiley Interdisciplinary Reviews: Systems Biology and Medicine 8, 186 (May 2016).
-
(2016)
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
, vol.8
, pp. 186
-
-
Hodos, R.A.1
Kidd, B.A.2
Shameer, K.3
Readhead, B.P.4
Dudley, J.T.5
-
3
-
-
85014966641
-
The role of drug profiles as similarity metrics: Applications to repurposing, adverse effects detection and drug-drug interactions
-
June
-
S. Vilar and G. Hripcsak, The role of drug profiles as similarity metrics: applications to repurposing, adverse effects detection and drug-drug interactions, Briefings in Bioinformatics, p. bbw048 (June 2016).
-
(2016)
Briefings in Bioinformatics
-
-
Vilar, S.1
Hripcsak, G.2
-
4
-
-
79958754253
-
PREDICT: A method for inferring novel drug indications with application to personalized medicine
-
June
-
A. Gottlieb, G. Y. Stein, E. Ruppin and R. Sharan, PREDICT: a method for inferring novel drug indications with application to personalized medicine, Mol Syst Biol 7, p. 496 (June 2011).
-
(2011)
Mol Syst Biol
, vol.7
, pp. 496
-
-
Gottlieb, A.1
Stein, G.Y.2
Ruppin, E.3
Sharan, R.4
-
6
-
-
84880072796
-
Drug Repositioning: A Machine-Learning Approach through Data Integration
-
F. Napolitano, Y. Zhao, V. M. Moreira, R. Tagliaferri, J. Kere, M. D’Amato and D. Greco, Drug Repositioning: A Machine-Learning Approach through Data Integration, Journal of Cheminformatics 5, p. 30 (2013).
-
(2013)
Journal of Cheminformatics
, vol.5
, pp. 30
-
-
Napolitano, F.1
Zhao, Y.2
Moreira, V.M.3
Tagliaferri, R.4
Kere, J.5
D’Amato, M.6
Greco, D.7
-
7
-
-
84886569335
-
Computational Drug Repositioning by Ranking and Integrating Multiple Data Sources, in Machine Learning and Knowledge Discovery in Databases
-
eds. H. Blockeel, K. Kersting, S. Nijssen and F. Zelezny
-
P. Zhang, P. Agarwal and Z. Obradovic, Computational Drug Repositioning by Ranking and Integrating Multiple Data Sources, in Machine Learning and Knowledge Discovery in Databases, eds. H. Blockeel, K. Kersting, S. Nijssen and F. ZeleznyLecture Notes in Computer Science (Springer Berlin Heidelberg, September 2013) pp. 579–594. DOI: 10.1007/978-3-642-40994-3 37.
-
Lecture Notes in Computer Science (Springer Berlin Heidelberg, September 2013)
, pp. 579-594
-
-
Zhang, P.1
Agarwal, P.2
Obradovic, Z.3
-
8
-
-
84909606201
-
A Network-Based Classification Model for Deriving Novel Drug-Disease Associations and Assessing Their Molecular Actions
-
October
-
M. Oh, J. Ahn and Y. Yoon, A Network-Based Classification Model for Deriving Novel Drug-Disease Associations and Assessing Their Molecular Actions, PLOS ONE 9, p. e111668 (October 2014).
-
(2014)
PLOS ONE
, vol.9
-
-
Oh, M.1
Ahn, J.2
Yoon, Y.3
-
9
-
-
84941649312
-
Similarity-based prediction for Anatomical Therapeutic Chemical classification of drugs by integrating multiple data sources
-
June
-
Z. Liu, F. Guo, J. Gu, Y. Wang, Y. Li, D. Wang, L. Lu, D. Li and F. He, Similarity-based prediction for Anatomical Therapeutic Chemical classification of drugs by integrating multiple data sources, Bioinformatics 31, 1788 (June 2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 1788
-
-
Liu, Z.1
Guo, F.2
Gu, J.3
Wang, Y.4
Li, Y.5
Wang, D.6
Lu, L.7
Li, D.8
He, F.9
-
10
-
-
84930642740
-
Matrix Factorization-Based Prediction of Novel Drug Indications by Integrating Genomic Space
-
May
-
W. Dai, X. Liu, Y. Gao, L. Chen, J. Song, D. Chen, K. Gao, Y. Jiang, Y. Yang, J. Chen and P. Lu, Matrix Factorization-Based Prediction of Novel Drug Indications by Integrating Genomic Space, Computational and Mathematical Methods in Medicine 2015, p. e275045 (May 2015).
-
(2015)
Computational and Mathematical Methods in Medicine
, vol.2015
-
-
Dai, W.1
Liu, X.2
Gao, Y.3
Chen, L.4
Song, J.5
Chen, D.6
Gao, K.7
Jiang, Y.8
Yang, Y.9
Chen, J.10
Lu, P.11
-
11
-
-
84990913647
-
-
May
-
H. Luo, J. Wang, M. Li, J. Luo, X. Peng, F.-X. Wu and Y. Pan, Drug repositioning based on comprehensive similarity measures and Bi-Random walk algorithm, Bioinformatics, p. btw228 (May 2016).
-
(2016)
Drug Repositioning Based on Comprehensive Similarity Measures and Bi-Random Walk Algorithm, Bioinformatics
, pp. btw228
-
-
Luo, H.1
Wang, J.2
Li, M.3
Luo, J.4
Peng, X.5
Wu, F.-X.6
Pan, Y.7
-
12
-
-
84907027073
-
Similarity-based modeling in large-scale prediction of drug-drug interactions
-
September
-
S. Vilar, E. Uriarte, L. Santana, T. Lorberbaum, G. Hripcsak, C. Friedman and N. P. Tatonetti, Similarity-based modeling in large-scale prediction of drug-drug interactions, Nature Protocols 9, 2147 (September 2014).
-
(2014)
Nature Protocols
, vol.9
, pp. 2147
-
-
Vilar, S.1
Uriarte, E.2
Santana, L.3
Lorberbaum, T.4
Hripcsak, G.5
Friedman, C.6
Tatonetti, N.P.7
-
13
-
-
84925383120
-
Toward more realistic drugtarget interaction predictions
-
March
-
T. Pahikkala, A. Airola, S. Pietil, S. Shakyawar, A. Szwajda, J. Tang and T. Aittokallio, Toward more realistic drugtarget interaction predictions, Briefings in Bioinformatics 16, 325 (March 2015).
-
(2015)
Briefings in Bioinformatics
, vol.16
, pp. 325
-
-
Pahikkala, T.1
Airola, A.2
Pietil, S.3
Shakyawar, S.4
Szwajda, A.5
Tang, J.6
Aittokallio, T.7
-
14
-
-
84870805181
-
A flaw in the typical evaluation scheme for pair-input computational predictions
-
(December
-
Y. Park and E. M. Marcotte, A flaw in the typical evaluation scheme for pair-input computational predictions, Nature methods 9, 1134 (December 2012).
-
(2012)
Nature Methods
, vol.9
, pp. 1134
-
-
Park, Y.1
Marcotte, E.M.2
-
15
-
-
80555140075
-
Scikit-learn: Machine Learning in Python
-
October
-
F. Pedregosa, G. Varoquaux, A. Gramfort, V. Michel, B. Thirion, O. Grisel, M. Blondel, P. Prettenhofer, R. Weiss, V. Dubourg, J. Vanderplas, A. Passos, D. Cournapeau, M. Brucher, M. Perrot and E. Duchesnay, Scikit-learn: Machine Learning in Python, Journal of Machine Learning Research 12, p. 28252830 (October 2011).
-
(2011)
Journal of Machine Learning Research
, vol.12
, pp. 28252830
-
-
Pedregosa, F.1
Varoquaux, G.2
Gramfort, A.3
Michel, V.4
Thirion, B.5
Grisel, O.6
Blondel, M.7
Prettenhofer, P.8
Weiss, R.9
Dubourg, V.10
Vanderplas, J.11
Passos, A.12
Cournapeau, D.13
Brucher, M.14
Perrot, M.15
Duchesnay, E.16
-
16
-
-
47249146126
-
Drug Target Identification Using Side-Effect Similarity
-
July
-
M. Campillos, M. Kuhn, A.-C. Gavin, L. J. Jensen and P. Bork, Drug Target Identification Using Side-Effect Similarity, Science 321, 263 (July 2008).
-
(2008)
Science
, vol.321
, pp. 263
-
-
Campillos, M.1
Kuhn, M.2
Gavin, A.-C.3
Jensen, L.J.4
Bork, P.5
-
17
-
-
83755163958
-
Systematic Drug Repositioning Based on Clinical Side-Effects
-
December
-
L. Yang and P. Agarwal, Systematic Drug Repositioning Based on Clinical Side-Effects, PLOS ONE 6, p. e28025 (December 2011).
-
(2011)
PLOS ONE
, vol.6
-
-
Yang, L.1
Agarwal, P.2
-
18
-
-
38549151817
-
DrugBank: A knowledgebase for drugs, drug actions and drug targets
-
January
-
D. S. Wishart, C. Knox, A. C. Guo, D. Cheng, S. Shrivastava, D. Tzur, B. Gautam and M. Hassanali, DrugBank: a knowledgebase for drugs, drug actions and drug targets, Nucleic Acids Research 36, D901 (January 2008).
-
(2008)
Nucleic Acids Research
, vol.36
, pp. D901
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
Shrivastava, S.5
Tzur, D.6
Gautam, B.7
Hassanali, M.8
-
19
-
-
67849104638
-
PubChem: A public information system for analyzing bioactivities of small molecules
-
July
-
Y. Wang, J. Xiao, T. O. Suzek, J. Zhang, J. Wang and S. H. Bryant, PubChem: a public information system for analyzing bioactivities of small molecules, Nucleic Acids Research 37, W623 (July 2009).
-
(2009)
Nucleic Acids Research
, vol.37
, pp. W623
-
-
Wang, Y.1
Xiao, J.2
Suzek, T.O.3
Zhang, J.4
Wang, J.5
Bryant, S.H.6
-
20
-
-
76149120425
-
A side effect resource to capture phenotypic effects of drugs
-
M. Kuhn, M. Campillos, I. Letunic, L. J. Jensen and P. Bork, A side effect resource to capture phenotypic effects of drugs, Molecular Systems Biology 6, p. 343 (2010).
-
(2010)
Molecular Systems Biology
, vol.6
, pp. 343
-
-
Kuhn, M.1
Campillos, M.2
Letunic, I.3
Jensen, L.J.4
Bork, P.5
-
21
-
-
68249111344
-
Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts
-
July
-
J. Li, X. Zhu and J. Y. Chen, Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts, PLoS computational biology 5, p. e1000450 (July 2009).
-
(2009)
Plos Computational Biology
, vol.5
-
-
Li, J.1
Zhu, X.2
Chen, J.Y.3
-
22
-
-
33749335282
-
The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease
-
September
-
J. Lamb, E. D. Crawford, D. Peck, J. W. Modell, I. C. Blat, M. J. Wrobel, J. Lerner, J.-P. Brunet, A. Subramanian, K. N. Ross, M. Reich, H. Hieronymus, G. Wei, S. A. Armstrong, S. J. Haggarty, P. A. Clemons, R. Wei, S. A. Carr, E. S. Lander and T. R. Golub, The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease, Science 313, 1929 (September 2006).
-
(2006)
Science
, vol.313
, pp. 1929
-
-
Lamb, J.1
Crawford, E.D.2
Peck, D.3
Modell, J.W.4
Blat, I.C.5
Wrobel, M.J.6
Lerner, J.7
Brunet, J.-P.8
Subramanian, A.9
Ross, K.N.10
Reich, M.11
Hieronymus, H.12
Wei, G.13
Armstrong, S.A.14
Haggarty, S.J.15
Clemons, P.A.16
Wei, R.17
Carr, S.A.18
Lander, E.S.19
Golub, T.R.20
more..
-
23
-
-
84867338003
-
Discovery and preclinical validation of drug indications using compendia of public gene expression data
-
August
-
M. Sirota, J. T. Dudley, J. Kim, A. P. Chiang, A. A. Morgan, A. Sweet-Cordero, J. Sage and A. J. Butte, Discovery and preclinical validation of drug indications using compendia of public gene expression data, Science Translational Medicine 3, p. 96ra77 (August 2011).
-
(2011)
Science Translational Medicine
, vol.3
, pp. 96ra77
-
-
Sirota, M.1
Dudley, J.T.2
Kim, J.3
Chiang, A.P.4
Morgan, A.A.5
Sweet-Cordero, A.6
Sage, J.7
Butte, A.J.8
-
24
-
-
84956680067
-
Network-based in silico drug efficacy screening
-
February
-
E. Guney, J. Menche, M. Vidal and A.-L. Barabási, Network-based in silico drug efficacy screening, Nature Communications 7, p. 10331 (February 2016).
-
(2016)
Nature Communications
, vol.7
-
-
Guney, E.1
Menche, J.2
Vidal, M.3
Barabási, A.-L.4
-
25
-
-
84927724806
-
Systematic evaluation of connectivity map for disease indications
-
December
-
J. Cheng, L. Yang, V. Kumar and P. Agarwal, Systematic evaluation of connectivity map for disease indications, Genome Medicine 6 (December 2014).
-
(2014)
Genome Medicine
, vol.6
-
-
Cheng, J.1
Yang, L.2
Kumar, V.3
Agarwal, P.4
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