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Volumn 9, Issue 9, 2014, Pages 2147-2163

Similarity-based modeling in large-scale prediction of drug-drug interactions

Author keywords

[No Author keywords available]

Indexed keywords

AREA UNDER THE CURVE; CHEMICAL MODEL; CHEMICAL STRUCTURE; DRUG DATABASE; DRUG INTERACTION; PATIENT SAFETY; PHYSIOLOGY; PROCEDURES; STANDARDS; TOXICITY TESTING;

EID: 84907027073     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2014.151     Document Type: Review
Times cited : (208)

References (28)
  • 2
    • 84856805878 scopus 로고    scopus 로고
    • A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports
    • Tatonetti, N.P., Fernald, G.H. & Altman, R.B. A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. J. Am. Med. Inform. Assoc. 19, 79-85 (2012).
    • (2012) J. Am. Med. Inform. Assoc. , vol.19 , pp. 79-85
    • Tatonetti, N.P.1    Fernald, G.H.2    Altman, R.B.3
  • 3
    • 84907021196 scopus 로고    scopus 로고
    • (accessed April 2013)
    • US Food and Drug Administration (FDA) http://www.fda.gov/ (accessed April 2013).
  • 4
    • 34447255458 scopus 로고    scopus 로고
    • Hospitalisations and emergency department visits due to drug-drug interactions: A literature review
    • Becker, M.L. et al. Hospitalisations and emergency department visits due to drug-drug interactions: a literature review. Pharmacoepidemiol. Drug Saf. 16, 641-651 (2007).
    • (2007) Pharmacoepidemiol. Drug Saf. , vol.16 , pp. 641-651
    • Becker, M.L.1
  • 5
    • 10744232330 scopus 로고    scopus 로고
    • The conduct of in vitro and in vivo drug-drug interaction studies: A Pharmaceutical Research and Manufacturers of America (PhRMA) perspective
    • Bjornsson, T.D. et al. The conduct of in vitro and in vivo drug-drug interaction studies: a Pharmaceutical Research and Manufacturers of America (PhRMA) perspective. Drug Metab. Dispos. 31, 815-832 (2003).
    • (2003) Drug Metab. Dispos. , vol.31 , pp. 815-832
    • Bjornsson, T.D.1
  • 6
    • 84859213965 scopus 로고    scopus 로고
    • Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: Application to rhabdomyolysis
    • Vilar, S. et al. Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis. J. Am. Med. Inform. Assoc. 18, I73-I80 (2011).
    • (2011) J. Am. Med. Inform. Assoc. , vol.18
    • Vilar, S.1
  • 7
    • 84864204553 scopus 로고    scopus 로고
    • Enhancing adverse drug event detection in electronic health records using molecular structure similarity: Application to pancreatitis
    • Vilar, S., Harpaz, R., Santana, L., Uriarte, E. & Friedman, C. Enhancing adverse drug event detection in electronic health records using molecular structure similarity: application to pancreatitis. PLoS ONE 7, e41471 (2012).
    • (2012) PLoS ONE , vol.7
    • Vilar, S.1    Harpaz, R.2    Santana, L.3    Uriarte, E.4    Friedman, C.5
  • 8
    • 84867675481 scopus 로고    scopus 로고
    • Drug-drug interaction through molecular structure similarity analysis
    • Vilar, S. et al. Drug-drug interaction through molecular structure similarity analysis. J. Am. Med. Inform. Assoc. 19, 1066-1074 (2012).
    • (2012) J. Am. Med. Inform. Assoc. , vol.19 , pp. 1066-1074
    • Vilar, S.1
  • 9
    • 84874766004 scopus 로고    scopus 로고
    • Detection of drug-drug interactions by modeling interaction profile fingerprints
    • Vilar, S., Uriarte, E., Santana, L., Tatonetti, N.P. & Friedman, C. Detection of drug-drug interactions by modeling interaction profile fingerprints. PLoS ONE 8, e58321 (2013).
    • (2013) PLoS ONE , vol.8
    • Vilar, S.1    Uriarte, E.2    Santana, L.3    Tatonetti, N.P.4    Friedman, C.5
  • 10
    • 84924596658 scopus 로고    scopus 로고
    • State of the art and development of a new drug-drug interaction large-scale predictor based on 3D pharmacophoric similarity
    • in press
    • Vilar, S., Uriarte, E., Santana, L., Friedman, C. & Tatonetti, N.P. State of the art and development of a new drug-drug interaction large-scale predictor based on 3D pharmacophoric similarity. Curr. Drug Metabolism. 15, in press (2014).
    • (2014) Curr. Drug Metabolism , vol.15
    • Vilar, S.1    Uriarte, E.2    Santana, L.3    Friedman, C.4    Tatonetti, N.P.5
  • 12
    • 84863548955 scopus 로고    scopus 로고
    • Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs
    • Liu, M. et al. Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs. J. Am. Med. Inform. Assoc. 19(e1), e28-e35 (2012).
    • (2012) J. Am. Med. Inform. Assoc. , vol.19 , Issue.E1
    • Liu, M.1
  • 13
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos, M., Kuhn, M., Gavin, A.C., Jensen, L.J. & Bork, P. Drug target identification using side-effect similarity. Science 321, 263-266 (2008).
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.C.3    Jensen, L.J.4    Bork, P.5
  • 14
    • 33845868822 scopus 로고    scopus 로고
    • PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results
    • Dixon, S.L. et al. PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results. J. Comput. Aided Mol. Des. 20, 647-671 (2006).
    • (2006) J. Comput. Aided Mol. Des. , vol.20 , pp. 647-671
    • Dixon, S.L.1
  • 15
    • 53849084442 scopus 로고    scopus 로고
    • In vitro evaluation of reversible and irreversible cytochrome P450 inhibition: Current status on methodologies and their utility for predicting drug-drug interactions
    • Fowler, S. & Zhang, H. In vitro evaluation of reversible and irreversible cytochrome P450 inhibition: current status on methodologies and their utility for predicting drug-drug interactions. AAPS J. 10, 410-424 (2008).
    • (2008) AAPS J. , vol.10 , pp. 410-424
    • Fowler, S.1    Zhang, H.2
  • 16
    • 39149140400 scopus 로고    scopus 로고
    • High confidence predictions of drug-drug interactions: Predicting affinities for cytochrome P450 2C9 with multiple computational methods
    • Hudelson, M.G. et al. High confidence predictions of drug-drug interactions: predicting affinities for cytochrome P450 2C9 with multiple computational methods. J. Med. Chem. 51, 648-654 (2008).
    • (2008) J. Med. Chem. , vol.51 , pp. 648-654
    • Hudelson, M.G.1
  • 19
    • 12344337351 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme
    • Rahnasto, M., Raunio, H., Poso, A., Wittekindt, C. & Juvonen, R.O. Quantitative structure-activity relationship analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme. J. Med. Chem. 48, 440-449 (2005).
    • (2005) J. Med. Chem. , vol.48 , pp. 440-449
    • Rahnasto, M.1    Raunio, H.2    Poso, A.3    Wittekindt, C.4    Juvonen, R.O.5
  • 20
    • 0035065393 scopus 로고    scopus 로고
    • Competitive CYP2C9 inhibitors: Enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis
    • Afzelius, L. et al. Competitive CYP2C9 inhibitors: enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis. Mol. Pharmacol. 59, 909-919 (2001).
    • (2001) Mol. Pharmacol. , vol.59 , pp. 909-919
    • Afzelius, L.1
  • 21
    • 0033967525 scopus 로고    scopus 로고
    • Theoretical investigation of substrate specificity for cytochromes p450 IA2, p450 IID6 and p450 IIIA4
    • De Rienzo, F., Fanelli, F., Menziani, M.C. & De Benedetti, P.G. Theoretical investigation of substrate specificity for cytochromes p450 IA2, p450 IID6 and p450 IIIA4. J. Comput. Aided Mol. Des. 14, 93-116 (2000).
    • (2000) J. Comput. Aided Mol. Des. , vol.14 , pp. 93-116
    • De Rienzo, F.1    Fanelli, F.2    Menziani, M.C.3    De Benedetti, P.G.4
  • 22
    • 84858300305 scopus 로고    scopus 로고
    • Discovery and explanation of drug-drug interactions via text mining
    • Percha, B., Garten, Y. & Altman, R.B. Discovery and explanation of drug-drug interactions via text mining. Pac. Symp. Biocomput. 2012, 410-421 (2012).
    • (2012) Pac. Symp. Biocomput. , vol.2012 , pp. 410-421
    • Percha, B.1    Garten, Y.2    Altman, R.B.3
  • 23
    • 77956517407 scopus 로고    scopus 로고
    • Discovering drug-drug interactions: A text-mining and reasoning approach based on properties of drug metabolism
    • Tari, L., Anwar, S., Liang, S., Cai, J. & Baral, C. Discovering drug-drug interactions: a text-mining and reasoning approach based on properties of drug metabolism. Bioinformatics 26, i547-i553 (2010).
    • (2010) Bioinformatics , vol.26
    • Tari, L.1    Anwar, S.2    Liang, S.3    Cai, J.4    Baral, C.5
  • 24
    • 84874662621 scopus 로고    scopus 로고
    • Informatics confronts drug-drug interactions
    • Percha, B. & Altman, R.B. Informatics confronts drug-drug interactions. Trends Pharmacol. Sci. 34, 178-184 (2013).
    • (2013) Trends Pharmacol. Sci. , vol.34 , pp. 178-184
    • Percha, B.1    Altman, R.B.2
  • 25
    • 84864231551 scopus 로고    scopus 로고
    • INDI: A computational framework for inferring drug interactions and their associated recommendations
    • Gottlieb, A., Stein, G.Y., Oron, Y., Ruppin, E. & Sharan, R. INDI: a computational framework for inferring drug interactions and their associated recommendations. Mol. Syst. Biol. 8, 592 (2012).
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 592
    • Gottlieb, A.1    Stein, G.Y.2    Oron, Y.3    Ruppin, E.4    Sharan, R.5
  • 28
    • 72849125569 scopus 로고    scopus 로고
    • Comparison of critical drug-drug interaction listings: The Department of Veterans Affairs medical system and standard reference compendia
    • Olvey, E.L., Clauschee, S. & Malone, D.C. Comparison of critical drug-drug interaction listings: the Department of Veterans Affairs medical system and standard reference compendia. Clin. Pharmacol. Ther. 87, 48-51 (2010).
    • (2010) Clin. Pharmacol. Ther. , vol.87 , pp. 48-51
    • Olvey, E.L.1    Clauschee, S.2    Malone, D.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.