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Volumn 547, Issue 7661, 2017, Pages 55-60

Recurrent and functional regulatory mutations in breast cancer

(33)  Rheinbay, Esther a,b   Parasuraman, Prasanna b   Grimsby, Jonna a   Tiao, Grace a   Engreitz, Jesse M a,c   Kim, Jaegil a   Lawrence, Michael S a,b   Taylor Weiner, Amaro a   Rodriguez Cuevas, Sergio d   Rosenberg, Mara a   Hess, Julian a   Stewart, Chip a   Maruvka, Yosef E a,b   Stojanov, Petar a   Cortes, Maria L a   Seepo, Sara a   Cibulskis, Carrie a   Tracy, Adam a   Pugh, Trevor J e   Lee, Jesse b   more..


Author keywords

[No Author keywords available]

Indexed keywords

ALDOLASE A; APOLIPOPROTEIN B MRNA EDITING ENZYME CATALYTIC POLYPEPTIDE LIKE; DNA FRAGMENT; EPIDERMAL GROWTH FACTOR RECEPTOR 2; HEPATOCYTE NUCLEAR FACTOR 3ALPHA; LEPTIN RECEPTOR OVERLAPPING TRANSCRIPT LIKE 1; NUCLEAR PARASPECKLE ASSEMBLY TRANSCRIPT 1; RNA COMPONENT OF MITOCHONDRIAL RNA PROCESSING; TBC1 DOMAIN FAMILY MEMBER 12; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E2F; UNCLASSIFIED DRUG; UNTRANSLATED RNA; ZINC FINGER PROTEIN 143; ESTROGEN RECEPTOR; FOXA1 PROTEIN, HUMAN; LONG UNTRANSLATED RNA; NEAT1 LONG NON-CODING RNA, HUMAN; PROTEIN BINDING; RMRP NON-CODING RNA, HUMAN;

EID: 85022191096     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature22992     Document Type: Article
Times cited : (241)

References (70)
  • 1
    • 84922527340 scopus 로고    scopus 로고
    • Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types
    • Fredriksson, N. J., Ny, L., Nilsson, J. A. & Larsson, E. Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. Nat. Genet. 46, 1258-1263 (2014).
    • (2014) Nat. Genet , vol.46 , pp. 1258-1263
    • Fredriksson, N.J.1    Ny, L.2    Nilsson, J.A.3    Larsson, E.4
  • 2
    • 84908894973 scopus 로고    scopus 로고
    • Genome-wide analysis of noncoding regulatory mutations in cancer
    • Weinhold, N., Jacobsen, A., Schultz, N., Sander, C. & Lee, W. Genome-wide analysis of noncoding regulatory mutations in cancer. Nat. Genet. 46, 1160-1165 (2014).
    • (2014) Nat. Genet , vol.46 , pp. 1160-1165
    • Weinhold, N.1    Jacobsen, A.2    Schultz, N.3    Sander, C.4    Lee, W.5
  • 3
    • 84956615603 scopus 로고    scopus 로고
    • Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations
    • Araya, C. L. et al. Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations. Nat. Genet. 48, 117-125 (2016).
    • (2016) Nat. Genet , vol.48 , pp. 117-125
    • Araya, C.L.1
  • 4
    • 84933278181 scopus 로고    scopus 로고
    • Recurrent somatic mutations in regulatory regions of human cancer genomes
    • Melton, C., Reuter, J. A., Spacek, D. V. & Snyder, M. Recurrent somatic mutations in regulatory regions of human cancer genomes. Nat. Genet. 47, 710-716 (2015).
    • (2015) Nat. Genet , vol.47 , pp. 710-716
    • Melton, C.1    Reuter, J.A.2    Spacek, D.V.3    Snyder, M.4
  • 5
    • 84973594792 scopus 로고    scopus 로고
    • Landscape of somatic mutations in 560 breast cancer whole-genome sequences
    • Nik-Zainal, S. et al. Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nature 534, 47-54 (2016).
    • (2016) Nature , vol.534 , pp. 47-54
    • Nik-Zainal, S.1
  • 6
    • 84892833777 scopus 로고    scopus 로고
    • Discovery and saturation analysis of cancer genes across 21 tumour types
    • Lawrence, M. S. et al. Discovery and saturation analysis of cancer genes across 21 tumour types. Nature 505, 495-501 (2014).
    • (2014) Nature , vol.505 , pp. 495-501
    • Lawrence, M.S.1
  • 7
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 8
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M. S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 9
    • 84861541343 scopus 로고    scopus 로고
    • Mutational processes molding the genomes of 21 breast cancers
    • Nik-Zainal, S. et al. Mutational processes molding the genomes of 21 breast cancers. Cell 149, 979-993 (2012).
    • (2012) Cell , vol.149 , pp. 979-993
    • Nik-Zainal, S.1
  • 10
    • 84943613527 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of invasive lobular breast cancer
    • Ciriello, G. et al. Comprehensive molecular portraits of invasive lobular breast cancer. Cell 163, 506-519 (2015).
    • (2015) Cell , vol.163 , pp. 506-519
    • Ciriello, G.1
  • 11
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • The Cancer Genome Atlas Network
    • The Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumours. Nature 490, 61-70 (2012).
    • (2012) Nature , vol.490 , pp. 61-70
  • 12
    • 84862584058 scopus 로고    scopus 로고
    • Whole-genome analysis informs breast cancer response to aromatase inhibition
    • Ellis, M. J. et al. Whole-genome analysis informs breast cancer response to aromatase inhibition. Nature 486, 353-360 (2012).
    • (2012) Nature , vol.486 , pp. 353-360
    • Ellis, M.J.1
  • 13
    • 84861576201 scopus 로고    scopus 로고
    • The landscape of cancer genes and mutational processes in breast cancer
    • Stephens, P. J. et al. The landscape of cancer genes and mutational processes in breast cancer. Nature 486, 400-404 (2012).
    • (2012) Nature , vol.486 , pp. 400-404
    • Stephens, P.J.1
  • 14
    • 84862523863 scopus 로고    scopus 로고
    • Sequence analysis of mutations and translocations across breast cancer subtypes
    • Banerji, S. et al. Sequence analysis of mutations and translocations across breast cancer subtypes. Nature 486, 405-409 (2012).
    • (2012) Nature , vol.486 , pp. 405-409
    • Banerji, S.1
  • 15
    • 34548680046 scopus 로고    scopus 로고
    • Comment on "The consensus coding sequences of human breast and colorectal cancers"
    • Getz, G. et al. Comment on "The consensus coding sequences of human breast and colorectal cancers". Science 317, 1500 (2007).
    • (2007) Science , vol.317 , pp. 1500
    • Getz, G.1
  • 16
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L. B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013).
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 17
    • 84883432724 scopus 로고    scopus 로고
    • An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
    • Roberts, S. A. et al. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat. Genet. 45, 970-976 (2013).
    • (2013) Nat. Genet , vol.45 , pp. 970-976
    • Roberts, S.A.1
  • 18
    • 84964308124 scopus 로고    scopus 로고
    • Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors
    • Kim, J. et al. Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors. Nat. Genet. 48, 600-606 (2016).
    • (2016) Nat. Genet , vol.48 , pp. 600-606
    • Kim, J.1
  • 19
    • 84860782006 scopus 로고    scopus 로고
    • Absolute quantification of somatic DNA alterations in human cancer
    • Carter, S. L. et al. Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol. 30, 413-421 (2012).
    • (2012) Nat. Biotechnol , vol.30 , pp. 413-421
    • Carter, S.L.1
  • 20
    • 84874191269 scopus 로고    scopus 로고
    • TERT promoter mutations in familial and sporadic melanoma
    • Horn, S. et al. TERT promoter mutations in familial and sporadic melanoma. Science 339, 959-961 (2013).
    • (2013) Science , vol.339 , pp. 959-961
    • Horn, S.1
  • 21
    • 84874189784 scopus 로고    scopus 로고
    • Highly recurrent TERT promoter mutations in human melanoma
    • Huang, F. W. et al. Highly recurrent TERT promoter mutations in human melanoma. Science 339, 957-959 (2013).
    • (2013) Science , vol.339 , pp. 957-959
    • Huang, F.W.1
  • 22
    • 84951288125 scopus 로고    scopus 로고
    • DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions
    • Huang, W. et al. DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions. Nature 528, 517-522 (2015).
    • (2015) Nature , vol.528 , pp. 517-522
    • Huang, W.1
  • 23
    • 84911486777 scopus 로고    scopus 로고
    • The long noncoding RNA Neat1 is required for mammary gland development and lactation
    • Standaert, L. et al. The long noncoding RNA Neat1 is required for mammary gland development and lactation. RNA 20, 1844-1849 (2014).
    • (2014) RNA , vol.20 , pp. 1844-1849
    • Standaert, L.1
  • 24
    • 22144486551 scopus 로고    scopus 로고
    • Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the Forkhead protein FoxA1
    • Carroll, J. S. et al. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the Forkhead protein FoxA1. Cell 122, 33-43 (2005).
    • (2005) Cell , vol.122 , pp. 33-43
    • Carroll, J.S.1
  • 25
    • 78651250284 scopus 로고    scopus 로고
    • FOXA1 is a key determinant of estrogen receptor function and endocrine response
    • Hurtado, A., Holmes, K. A., Ross-Innes, C. S., Schmidt, D. & Carroll, J. S. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat. Genet. 43, 27-33 (2011).
    • (2011) Nat. Genet , vol.43 , pp. 27-33
    • Hurtado, A.1    Holmes, K.A.2    Ross-Innes, C.S.3    Schmidt, D.4    Carroll, J.S.5
  • 26
    • 84856008906 scopus 로고    scopus 로고
    • Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
    • Ross-Innes, C. S. et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 481, 389-393 (2012).
    • (2012) Nature , vol.481 , pp. 389-393
    • Ross-Innes, C.S.1
  • 27
    • 34547691136 scopus 로고    scopus 로고
    • FOXA1 expression in breast cancer-correlation with luminal subtype A and survival
    • Badve, S. et al. FOXA1 expression in breast cancer-correlation with luminal subtype A and survival. Clin. Cancer Res. 13, 4415-4421 (2007).
    • (2007) Clin. Cancer Res , vol.13 , pp. 4415-4421
    • Badve, S.1
  • 28
    • 40449117593 scopus 로고    scopus 로고
    • Forkhead box A1 expression in breast cancer is associated with luminal subtype and good prognosis
    • Thorat, M. A. et al. Forkhead box A1 expression in breast cancer is associated with luminal subtype and good prognosis. J. Clin. Pathol. 61, 327-332 (2008).
    • (2008) J. Clin. Pathol , vol.61 , pp. 327-332
    • Thorat, M.A.1
  • 29
    • 85028112875 scopus 로고    scopus 로고
    • FOXA1 is an independent prognostic marker for ER-positive breast cancer
    • Mehta, R. J. et al. FOXA1 is an independent prognostic marker for ER-positive breast cancer. Breast Cancer Res. Treat. 131, 881-890 (2012).
    • (2012) Breast Cancer Res. Treat , vol.131 , pp. 881-890
    • Mehta, R.J.1
  • 30
    • 84992371656 scopus 로고    scopus 로고
    • FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer
    • Fu, X. et al. FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer. Proc. Natl Acad. Sci. USA 113, E6600-E6609 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. E6600-E6609
    • Fu, X.1
  • 31
    • 85006247048 scopus 로고    scopus 로고
    • TransCONFIRM: Identification of a genetic signature of response to fulvestrant in advanced hormone receptor-positive breast cancer
    • Jeselsohn, R. et al. TransCONFIRM: identification of a genetic signature of response to fulvestrant in advanced hormone receptor-positive breast cancer. Clin. Cancer Res. 22, 5755 (2016)
    • (2016) Clin. Cancer Res , vol.22 , pp. 5755
    • Jeselsohn, R.1
  • 32
    • 78650762588 scopus 로고    scopus 로고
    • A scalable, fully automated process for construction of sequenceready human exome targeted capture libraries
    • Fisher, S. et al. A scalable, fully automated process for construction of sequenceready human exome targeted capture libraries. Genome Biol. 12, R1 (2011).
    • (2011) Genome Biol , vol.12 , pp. R1
    • Fisher, S.1
  • 33
    • 59849113821 scopus 로고    scopus 로고
    • Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
    • Gnirke, A. et al. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 27, 182-189 (2009).
    • (2009) Nat. Biotechnol , vol.27 , pp. 182-189
    • Gnirke, A.1
  • 35
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 36
    • 80052707308 scopus 로고    scopus 로고
    • ContEst: Estimating cross-contamination of human samples in next-generation sequencing data
    • Cibulskis, K. et al. ContEst: estimating cross-contamination of human samples in next-generation sequencing data. Bioinformatics 27, 2601-2602 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2601-2602
    • Cibulskis, K.1
  • 37
    • 84876020288 scopus 로고    scopus 로고
    • Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation
    • Costello, M. et al. Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation. Nucleic Acids Res. 41, e67 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. e67
    • Costello, M.1
  • 38
    • 84925965197 scopus 로고    scopus 로고
    • Oncotator: Cancer variant annotation tool
    • Ramos, A. H. et al. Oncotator: cancer variant annotation tool. Hum. Mutat. 36, E2423-E2429 (2015).
    • (2015) Hum. Mutat , vol.36 , pp. E2423-E2429
    • Ramos, A.H.1
  • 39
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2. 0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • Mermel, C. H. et al. GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol. 12, R41 (2011).
    • (2011) Genome Biol , vol.12 , pp. R41
    • Mermel, C.H.1
  • 40
    • 84945302209 scopus 로고    scopus 로고
    • Mutations driving CLL and their evolution in progression and relapse
    • Landau, D. A. et al. Mutations driving CLL and their evolution in progression and relapse. Nature 526, 525-530 (2015).
    • (2015) Nature , vol.526 , pp. 525-530
    • Landau, D.A.1
  • 41
    • 84893904007 scopus 로고    scopus 로고
    • A polygenic burden of rare disruptive mutations in schizophrenia
    • Purcell, S. M. et al. A polygenic burden of rare disruptive mutations in schizophrenia. Nature 506, 185-190 (2014).
    • (2014) Nature , vol.506 , pp. 185-190
    • Purcell, S.M.1
  • 42
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A. L. et al. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904-909 (2006).
    • (2006) Nat. Genet , vol.38 , pp. 904-909
    • Price, A.L.1
  • 43
    • 84870599966 scopus 로고    scopus 로고
    • Functional impact bias reveals cancer drivers
    • Gonzalez-Perez, A. & Lopez-Bigas, N. Functional impact bias reveals cancer drivers. Nucleic Acids Res. 40, e169 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. e169
    • Gonzalez-Perez, A.1    Lopez-Bigas, N.2
  • 44
    • 84949034526 scopus 로고    scopus 로고
    • LARVA: An integrative framework for large-scale analysis of recurrent variants in noncoding annotations
    • Lochovsky, L., Zhang, J., Fu, Y., Khurana, E. & Gerstein, M. LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations. Nucleic Acids Res. 43, 8123-8134 (2015).
    • (2015) Nucleic Acids Res , vol.43 , pp. 8123-8134
    • Lochovsky, L.1    Zhang, J.2    Fu, Y.3    Khurana, E.4    Gerstein, M.5
  • 45
    • 84929991442 scopus 로고    scopus 로고
    • Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin
    • Martincorena, I. et al. Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin. Science 348, 880-886 (2015).
    • (2015) Science , vol.348 , pp. 880-886
    • Martincorena, I.1
  • 46
    • 84864598664 scopus 로고    scopus 로고
    • MuSiC: Identifying mutational significance in cancer genomes
    • Dees, N. D. et al. MuSiC: identifying mutational significance in cancer genomes. Genome Res. 22, 1589-1598 (2012).
    • (2012) Genome Res , vol.22 , pp. 1589-1598
    • Dees, N.D.1
  • 47
    • 31144472543 scopus 로고    scopus 로고
    • Fuzzy and randomized confidence intervals and P values
    • Geyer, C. J. & Meeden, G. D. Fuzzy and randomized confidence intervals and P values. Stat. Sci. 20, 358-366 (2005).
    • (2005) Stat. Sci , vol.20 , pp. 358-366
    • Geyer, C.J.1    Meeden, G.D.2
  • 48
    • 84988075071 scopus 로고
    • Practicing safe statistics with the mid-p
    • Routledge, R. Practicing safe statistics with the mid-p. Can. J. Stat. 22, 103-110 (1994).
    • (1994) Can. J. Stat , vol.22 , pp. 103-110
    • Routledge, R.1
  • 49
    • 84943411478 scopus 로고    scopus 로고
    • Comprehensive assessment of cancer missense mutation clustering in protein structures
    • Kamburov, A. et al. Comprehensive assessment of cancer missense mutation clustering in protein structures. Proc. Natl Acad. Sci. USA 112, E5486-E5495 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. E5486-E5495
    • Kamburov, A.1
  • 51
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B 57, 289-300 (1995).
    • (1995) J. Roy. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 52
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
    • (2012) Nature , vol.489 , pp. 57-74
  • 53
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC: Transcriptional regulation, from patterns to profiles
    • Matys, V. et al. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374-378 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 374-378
    • Matys, V.1
  • 54
    • 0347125328 scopus 로고    scopus 로고
    • JASPAR: An open-access database for eukaryotic transcription factor binding profiles
    • Sandelin, A., Alkema, W., Engström, P., Wasserman, W. W. & Lenhard, B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32, D91-D94 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. D91-D94
    • Sandelin, A.1    Alkema, W.2    Engström, P.3    Wasserman, W.W.4    Lenhard, B.5
  • 55
    • 30344439849 scopus 로고    scopus 로고
    • Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity
    • Hallikas, O. et al. Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity. Cell 124, 47-59 (2006).
    • (2006) Cell , vol.124 , pp. 47-59
    • Hallikas, O.1
  • 56
    • 77953006022 scopus 로고    scopus 로고
    • Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
    • Jolma, A. et al. Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Genome Res. 20, 861-873 (2010).
    • (2010) Genome Res , vol.20 , pp. 861-873
    • Jolma, A.1
  • 57
    • 84872540994 scopus 로고    scopus 로고
    • DNA-binding specificities of human transcription factors
    • Jolma, A. et al. DNA-binding specificities of human transcription factors. Cell 152, 327-339 (2013).
    • (2013) Cell , vol.152 , pp. 327-339
    • Jolma, A.1
  • 58
    • 77954954652 scopus 로고    scopus 로고
    • Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo
    • Wei, G. H. et al. Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo. EMBO J. 29, 2147-2160 (2010).
    • (2010) EMBO J , vol.29 , pp. 2147-2160
    • Wei, G.H.1
  • 59
    • 39049165160 scopus 로고    scopus 로고
    • Efficient and accurate P value computation for position weight matrices
    • Touzet, H. & Varré, J. S. Efficient and accurate P value computation for position weight matrices. Algorithms Mol. Biol. 2, 15 (2007).
    • (2007) Algorithms Mol. Biol , vol.2 , pp. 15
    • Touzet, H.1    Varré, J.S.2
  • 60
    • 84932628860 scopus 로고    scopus 로고
    • Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas
    • The Cancer Genome Atlas Research
    • The Cancer Genome Atlas Research. Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas. N. Engl. J. Med. 372, 2481-2498 (2015).
    • (2015) N. Engl. J. Med , vol.372 , pp. 2481-2498
  • 61
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and samtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 62
    • 84868198825 scopus 로고    scopus 로고
    • Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
    • Cowper-Sal lari, R. et al. Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression. Nat. Genet. 44, 1191-1198 (2012).
    • (2012) Nat. Genet , vol.44 , pp. 1191-1198
    • Cowper-Sal Lari, R.1
  • 63
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 64
    • 77949587674 scopus 로고    scopus 로고
    • Lentiviral vectors to probe and manipulate the Wnt signaling pathway
    • Fuerer, C. & Nusse, R. Lentiviral vectors to probe and manipulate the Wnt signaling pathway. PLoS ONE 5, e9370 (2010).
    • (2010) PLoS ONE , vol.5 , pp. e9370
    • Fuerer, C.1    Nusse, R.2
  • 65
    • 0026609875 scopus 로고
    • Independent binding of the retinoblastoma protein and p107 to the transcription factor E2F
    • Cao, L. et al. Independent binding of the retinoblastoma protein and p107 to the transcription factor E2F. Nature 355, 176-179 (1992).
    • (1992) Nature , vol.355 , pp. 176-179
    • Cao, L.1
  • 66
    • 0141814666 scopus 로고    scopus 로고
    • Specificity in the activation and control of transcription factor E2F-dependent apoptosis
    • Hallstrom, T. C. & Nevins, J. R. Specificity in the activation and control of transcription factor E2F-dependent apoptosis. Proc. Natl Acad. Sci. USA 100, 10848-10853 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 10848-10853
    • Hallstrom, T.C.1    Nevins, J.R.2
  • 67
    • 23744507860 scopus 로고    scopus 로고
    • E2F1 is crucial for E2F-dependent apoptosis
    • Lazzerini Denchi, E. & Helin, K. E2F1 is crucial for E2F-dependent apoptosis. EMBO Rep. 6, 661-668 (2005).
    • (2005) EMBO Rep , vol.6 , pp. 661-668
    • Lazzerini Denchi, E.1    Helin, K.2
  • 68
    • 0141927097 scopus 로고    scopus 로고
    • PRB contains an E2F1-specific binding domain that allows E2F1-induced apoptosis to be regulated separately from other E2F activities
    • Dick, F. A. & Dyson, N. pRB contains an E2F1-specific binding domain that allows E2F1-induced apoptosis to be regulated separately from other E2F activities. Mol. Cell 12, 639-649 (2003).
    • (2003) Mol. Cell , vol.12 , pp. 639-649
    • Dick, F.A.1    Dyson, N.2
  • 69
    • 70149114591 scopus 로고    scopus 로고
    • Antiestrogen-resistant subclones of MCF-7 human breast cancer cells are derived from a common monoclonal drug-resistant progenitor
    • Coser, K. R. et al. Antiestrogen-resistant subclones of MCF-7 human breast cancer cells are derived from a common monoclonal drug-resistant progenitor. Proc. Natl Acad. Sci. USA 106, 14536-14541 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 14536-14541
    • Coser, K.R.1
  • 70
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.