-
1
-
-
84959552937
-
SeXX matters in infectious disease pathogenesis
-
vom Steeg LG, Klein SL, Klein S, Roberts C, Griesbeck M, Altfeld M, et al. SeXX matters in infectious disease pathogenesis. PLoS Pathog (2016) 12:e1005374. doi:10.1371/journal.ppat.1005374
-
(2016)
PLoS Pathog
, vol.12
-
-
vom Steeg, L.G.1
Klein, S.L.2
Klein, S.3
Roberts, C.4
Griesbeck, M.5
Altfeld, M.6
-
2
-
-
50249179849
-
The X-files in immunity: sex-based differences predispose immune responses
-
Fish EN. The X-files in immunity: sex-based differences predispose immune responses. Nat Rev Immunol (2008) 8:737-44. doi:10.1038/nri2394
-
(2008)
Nat Rev Immunol
, vol.8
, pp. 737-744
-
-
Fish, E.N.1
-
3
-
-
0035554904
-
Sex differences in autoimmune disease
-
Whitacre CC. Sex differences in autoimmune disease. Nat Immunol (2001) 2:777-80. doi:10.1038/ni0901-777
-
(2001)
Nat Immunol
, vol.2
, pp. 777-780
-
-
Whitacre, C.C.1
-
4
-
-
84858750174
-
The X chromosome and immune associated genes
-
Bianchi I, Lleo A, Invernizzi P. The X chromosome and immune associated genes. J Autoimmun (2012) 38:J187-92. doi:10.1016/j.jaut.2011.11.012
-
(2012)
J Autoimmun
, vol.38
, pp. J187-J192
-
-
Bianchi, I.1
Lleo, A.2
Invernizzi, P.3
-
5
-
-
77954948753
-
The X chromosome in immune functions: when a chromosome makes the difference
-
Libert C, Dejager L, Pinheiro I. The X chromosome in immune functions: when a chromosome makes the difference. Nat Rev Immunol (2010) 10:594-604. doi:10.1038/nri2815
-
(2010)
Nat Rev Immunol
, vol.10
, pp. 594-604
-
-
Libert, C.1
Dejager, L.2
Pinheiro, I.3
-
6
-
-
84921786777
-
Regional specialization within the intestinal immune system
-
Mowat AM, Agace WW. Regional specialization within the intestinal immune system. Nat Rev Immunol (2014) 14:667-85. doi:10.1038/nri3738
-
(2014)
Nat Rev Immunol
, vol.14
, pp. 667-685
-
-
Mowat, A.M.1
Agace, W.W.2
-
7
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
Round JL, Mazmanian SK. The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol (2009) 9:313-23. doi:10.1038/nri2515
-
(2009)
Nat Rev Immunol
, vol.9
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
8
-
-
33144460422
-
Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study
-
Mueller S, Saunier K, Hanisch C, Norin E, Alm L, Midtvedt T, et al. Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol (2006) 72:1027-33. doi:10.1128/AEM.72.2.1027-1033.2006
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1027-1033
-
-
Mueller, S.1
Saunier, K.2
Hanisch, C.3
Norin, E.4
Alm, L.5
Midtvedt, T.6
-
9
-
-
84971228909
-
Intestinal microbiota is influenced by gender and body mass index
-
Haro C, Rangel-Zúñiga OA, Alcalá-Díaz JF, Gómez-Delgado F, Pérez-Martínez P, Delgado-Lista J, et al. Intestinal microbiota is influenced by gender and body mass index. PLoS One (2016) 11:e0154090. doi:10.1371/journal.pone.0154090
-
(2016)
PLoS One
, vol.11
-
-
Haro, C.1
Rangel-Zúñiga, O.A.2
Alcalá-Díaz, J.F.3
Gómez-Delgado, F.4
Pérez-Martínez, P.5
Delgado-Lista, J.6
-
10
-
-
84882610339
-
Gender bias in autoimmunity is influenced by microbiota
-
Yurkovetskiy L, Burrows M, Khan AA, Graham L, Volchkov P, Becker L, et al. Gender bias in autoimmunity is influenced by microbiota. Immunity (2013) 39:400-12. doi:10.1016/j.immuni.2013.08.013
-
(2013)
Immunity
, vol.39
, pp. 400-412
-
-
Yurkovetskiy, L.1
Burrows, M.2
Khan, A.A.3
Graham, L.4
Volchkov, P.5
Becker, L.6
-
11
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
Markle JGM, Frank DN, Mortin-Toth S, Robertson CE, Feazel LM, Rolle-Kampczyk U, et al. Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science (2013) 339:1084-8. doi:10.1126/science.1233521
-
(2013)
Science
, vol.339
, pp. 1084-1088
-
-
Markle, J.G.M.1
Frank, D.N.2
Mortin-Toth, S.3
Robertson, C.E.4
Feazel, L.M.5
Rolle-Kampczyk, U.6
-
12
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 5:R80. doi:10.1186/gb-2004-5-10-r80
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
-
13
-
-
80053639327
-
MADMAX - Management and analysis database for multiple ~omics experiments
-
Lin K, Kools H, de Groot PJ, Gavai AK, Basnet RK, Cheng F, et al. MADMAX - Management and analysis database for multiple ~omics experiments. J Integr Bioinform (2011) 8:160. doi:10.2390/biecoll-jib-2011-160
-
(2011)
J Integr Bioinform
, vol.8
, pp. 160
-
-
Lin, K.1
Kools, H.2
de Groot, P.J.3
Gavai, A.K.4
Basnet, R.K.5
Cheng, F.6
-
14
-
-
29144535372
-
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
-
Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, et al. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res (2005) 33:e175. doi:10.1093/nar/gni179
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Dai, M.1
Wang, P.2
Boyd, A.D.3
Kostov, G.4
Athey, B.5
Jones, E.G.6
-
15
-
-
16544386180
-
Experimental design and low-level analysis of microarray data
-
Bolstad BM, Collin F, Simpson KM, Irizarry RA, Speed TP. Experimental design and low-level analysis of microarray data. Int Rev Neurobiol (2004) 60:25-58. doi:10.1016/S0074-7742(04)60002-X
-
(2004)
Int Rev Neurobiol
, vol.60
, pp. 25-58
-
-
Bolstad, B.M.1
Collin, F.2
Simpson, K.M.3
Irizarry, R.A.4
Speed, T.P.5
-
16
-
-
83155178360
-
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification
-
Berry D, Ben Mahfoudh K, Wagner M, Loy A. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol (2011) 77:7846-9. doi:10.1128/AEM.05220-11
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7846-7849
-
-
Berry, D.1
Ben Mahfoudh, K.2
Wagner, M.3
Loy, A.4
-
17
-
-
2442510059
-
Improved extraction of PCR-quality community DNA from digesta and fecal samples
-
Yu Z, Morrison M. Improved extraction of PCR-quality community DNA from digesta and fecal samples. Biotechniques (2004) 36:808-12.
-
(2004)
Biotechniques
, vol.36
, pp. 808-812
-
-
Yu, Z.1
Morrison, M.2
-
18
-
-
84880135340
-
Diversity of human small intestinal Streptococcus and Veillonella populations
-
van den Bogert B, Erkus O, Boekhorst J, de Goffau M, Smid EJ, Zoetendal EG, et al. Diversity of human small intestinal Streptococcus and Veillonella populations. FEMS Microbiol Ecol (2013) 85:376-88. doi:10.1111/1574-6941.12127
-
(2013)
FEMS Microbiol Ecol
, vol.85
, pp. 376-388
-
-
van den Bogert, B.1
Erkus, O.2
Boekhorst, J.3
de Goffau, M.4
Smid, E.J.5
Zoetendal, E.G.6
-
19
-
-
79953204638
-
Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples
-
van den Bogert B, de Vos WM, Zoetendal EG, Kleerebezem M. Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl Environ Microbiol (2011) 77:2071-80. doi:10.1128/AEM.02477-10
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2071-2080
-
-
van den Bogert, B.1
de Vos, W.M.2
Zoetendal, E.G.3
Kleerebezem, M.4
-
20
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2013) 41:D590-6. doi:10.1093/nar/gks1219
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
-
21
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 7:335-6. doi:10.1038/nmeth.f.303
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
22
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A (2003) 100:9440-5. doi:10.1073/pnas.1530509100
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
23
-
-
33846786836
-
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
-
Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M. Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. BMC Bioinformatics (2006) 7:538. doi:10.1186/1471-2105-7-538
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 538
-
-
Sartor, M.A.1
Tomlinson, C.R.2
Wesselkamper, S.C.3
Sivaganesan, S.4
Leikauf, G.D.5
Medvedovic, M.6
-
24
-
-
84942197900
-
The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts
-
Ainsworth D, Krause L, Bridge T, Torda G, Raina J-B, Zakrzewski M, et al. The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME J (2015) 9:2261-74. doi:10.1038/ismej.2015.39
-
(2015)
ISME J
, vol.9
, pp. 2261-2274
-
-
Ainsworth, D.1
Krause, L.2
Bridge, T.3
Torda, G.4
Raina, J.-B.5
Zakrzewski, M.6
-
25
-
-
0036582215
-
T-cell development and the CD4-CD8 lineage decision
-
Germain RN. T-cell development and the CD4-CD8 lineage decision. Nat Rev Immunol (2002) 2:309-22. doi:10.1038/nri798
-
(2002)
Nat Rev Immunol
, vol.2
, pp. 309-322
-
-
Germain, R.N.1
-
27
-
-
74049129976
-
Variants of DENND1B associated with asthma in children
-
Sleiman PMA, Flory J, Imielinski M, Bradfield JP, Annaiah K, Willis-Owen SAG, et al. Variants of DENND1B associated with asthma in children. N Engl J Med (2010) 362:36-44. doi:10.1056/NEJMoa0901867
-
(2010)
N Engl J Med
, vol.362
, pp. 36-44
-
-
Sleiman, P.M.A.1
Flory, J.2
Imielinski, M.3
Bradfield, J.P.4
Annaiah, K.5
Willis-Owen, S.A.G.6
-
28
-
-
78649489009
-
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci
-
Franke A, McGovern DPB, Barrett JC, Wang K, Radford-Smith GL, Ahmad T, et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nat Genet (2010) 42:1118-25. doi:10.1038/ng.717
-
(2010)
Nat Genet
, vol.42
, pp. 1118-1125
-
-
Franke, A.1
McGovern, D.P.B.2
Barrett, J.C.3
Wang, K.4
Radford-Smith, G.L.5
Ahmad, T.6
-
29
-
-
11144314814
-
Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron
-
Flo TH, Smith KD, Sato S, Rodriguez DJ, Holmes MA, Strong RK, et al. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Nature (2004) 432:917-21. doi:10.1038/nature03104
-
(2004)
Nature
, vol.432
, pp. 917-921
-
-
Flo, T.H.1
Smith, K.D.2
Sato, S.3
Rodriguez, D.J.4
Holmes, M.A.5
Strong, R.K.6
-
30
-
-
84902192020
-
New era for mucosal mast cells: their roles in inflammation, allergic immune responses and adjuvant development
-
Kurashima Y, Kiyono H. New era for mucosal mast cells: their roles in inflammation, allergic immune responses and adjuvant development. Exp Mol Med (2014) 46:e83. doi:10.1038/emm.2014.7
-
(2014)
Exp Mol Med
, vol.46
-
-
Kurashima, Y.1
Kiyono, H.2
-
32
-
-
79151475628
-
The complement system
-
Sarma JV, Ward PA. The complement system. Cell Tissue Res (2011) 343:227-35. doi:10.1007/s00441-010-1034-0
-
(2011)
Cell Tissue Res
, vol.343
, pp. 227-235
-
-
Sarma, J.V.1
Ward, P.A.2
-
33
-
-
84862942116
-
Resistin: functional roles and therapeutic considerations for cardiovascular disease
-
Jamaluddin MS, Weakley SM, Yao Q, Chen C. Resistin: functional roles and therapeutic considerations for cardiovascular disease. Br J Pharmacol (2012) 165:622-32. doi:10.1111/j.1476-5381.2011.01369.x
-
(2012)
Br J Pharmacol
, vol.165
, pp. 622-632
-
-
Jamaluddin, M.S.1
Weakley, S.M.2
Yao, Q.3
Chen, C.4
-
34
-
-
84958108199
-
The gut epithelial receptor LRRC19 promotes the recruitment of immune cells and gut inflammation
-
Cao S, Su X, Zeng B, Yan H, Huang Y, Wang E, et al. The gut epithelial receptor LRRC19 promotes the recruitment of immune cells and gut inflammation. Cell Rep (2016) 14:695-707. doi:10.1016/j.celrep.2015.12.070
-
(2016)
Cell Rep
, vol.14
, pp. 695-707
-
-
Cao, S.1
Su, X.2
Zeng, B.3
Yan, H.4
Huang, Y.5
Wang, E.6
-
35
-
-
0035120798
-
Adenosine deaminase: functional implications and different classes of inhibitors
-
Cristalli G, Costanzi S, Lambertucci C, Lupidi G, Vittori S, Volpini R, et al. Adenosine deaminase: functional implications and different classes of inhibitors. Med Res Rev (2001) 21:105-28. doi:10.1002/1098-1128(200103)21:2<105::AID-MED1002>3.0.CO;2-U
-
(2001)
Med Res Rev
, vol.21
, pp. 105-128
-
-
Cristalli, G.1
Costanzi, S.2
Lambertucci, C.3
Lupidi, G.4
Vittori, S.5
Volpini, R.6
-
36
-
-
0036343675
-
Rosiglitazone: a review of its use in the management of type 2 diabetes mellitus
-
Wagstaff AJ, Goa KL. Rosiglitazone: a review of its use in the management of type 2 diabetes mellitus. Drugs (2002) 62:1805-37. doi:10.2165/00003495-200262120-00007
-
(2002)
Drugs
, vol.62
, pp. 1805-1837
-
-
Wagstaff, A.J.1
Goa, K.L.2
-
37
-
-
58149193234
-
STRING 8 - a global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, et al. STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res (2009) 37:D412-6. doi:10.1093/nar/gkn760
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D412-D416
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
-
38
-
-
33746869688
-
TLR7 ligands induce higher IFN-production in females
-
Berghofer B, Frommer T, Haley G, Fink L, Bein G, Hackstein H. TLR7 ligands induce higher IFN-production in females. J Immunol (2006) 177:2088-96. doi:10.4049/jimmunol.177.4.2088
-
(2006)
J Immunol
, vol.177
, pp. 2088-2096
-
-
Berghofer, B.1
Frommer, T.2
Haley, G.3
Fink, L.4
Bein, G.5
Hackstein, H.6
-
39
-
-
84912553318
-
X-chromosome complement and estrogen receptor signaling independently contribute to the enhanced TLR7-mediated IFN-production of plasmacytoid dendritic cells from women
-
Laffont S, Rouquie N, Azar P, Seillet C, Plumas J, Aspord C, et al. X-chromosome complement and estrogen receptor signaling independently contribute to the enhanced TLR7-mediated IFN-production of plasmacytoid dendritic cells from women. J Immunol (2014) 193:5444-52. doi:10.4049/jimmunol.1303400
-
(2014)
J Immunol
, vol.193
, pp. 5444-5452
-
-
Laffont, S.1
Rouquie, N.2
Azar, P.3
Seillet, C.4
Plumas, J.5
Aspord, C.6
-
40
-
-
84902584152
-
The role of type I interferons in intestinal infection, homeostasis, and inflammation
-
Cho H, Kelsall BL. The role of type I interferons in intestinal infection, homeostasis, and inflammation. Immunol Rev (2014) 260:145-67. doi:10.1111/imr.12195
-
(2014)
Immunol Rev
, vol.260
, pp. 145-167
-
-
Cho, H.1
Kelsall, B.L.2
-
41
-
-
84894066731
-
Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration
-
Tschurtschenthaler M, Wang J, Fricke C, Fritz TMJ, Niederreiter L, Adolph TE, et al. Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration. Gut (2014) 63:1921-31. doi:10.1136/gutjnl-2013-305863
-
(2014)
Gut
, vol.63
, pp. 1921-1931
-
-
Tschurtschenthaler, M.1
Wang, J.2
Fricke, C.3
Fritz, T.M.J.4
Niederreiter, L.5
Adolph, T.E.6
-
42
-
-
54549122338
-
Innate immunity and intestinal microbiota in the development of type 1 diabetes
-
Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, et al. Innate immunity and intestinal microbiota in the development of type 1 diabetes. Nature (2008) 455:1109-13. doi:10.1038/nature07336
-
(2008)
Nature
, vol.455
, pp. 1109-1113
-
-
Wen, L.1
Ley, R.E.2
Volchkov, P.Y.3
Stranges, P.B.4
Avanesyan, L.5
Stonebraker, A.C.6
-
43
-
-
84873372079
-
NOD2-mediated dysbiosis predisposes mice to transmissible colitis and colorectal cancer
-
Couturier-Maillard A, Secher T, Rehman A, Normand S, De Arcangelis A, Haesler R, et al. NOD2-mediated dysbiosis predisposes mice to transmissible colitis and colorectal cancer. J Clin Invest (2013) 123:700-11. doi:10.1172/JCI62236
-
(2013)
J Clin Invest
, vol.123
, pp. 700-711
-
-
Couturier-Maillard, A.1
Secher, T.2
Rehman, A.3
Normand, S.4
De Arcangelis, A.5
Haesler, R.6
-
44
-
-
84963594969
-
Lipocalin 2 protects from inflammation and tumorigenesis associated with gut microbiota alterations
-
Moschen AR, Gerner RR, Wang J, Klepsch V, Adolph TE, Reider SJ, et al. Lipocalin 2 protects from inflammation and tumorigenesis associated with gut microbiota alterations. Cell Host Microbe (2016) 19:455-69. doi:10.1016/j.chom.2016.03.007
-
(2016)
Cell Host Microbe
, vol.19
, pp. 455-469
-
-
Moschen, A.R.1
Gerner, R.R.2
Wang, J.3
Klepsch, V.4
Adolph, T.E.5
Reider, S.J.6
-
45
-
-
46749127004
-
DNA damage induced by chronic inflammation contributes to colon carcinogenesis in mice
-
Meira LB, Bugni JM, Green SL, Lee C-W, Pang B, Borenshtein D, et al. DNA damage induced by chronic inflammation contributes to colon carcinogenesis in mice. J Clin Invest (2008) 118:965-73. doi:10.1172/JCI35073
-
(2008)
J Clin Invest
, vol.118
, pp. 965-973
-
-
Meira, L.B.1
Bugni, J.M.2
Green, S.L.3
Lee, C.-W.4
Pang, B.5
Borenshtein, D.6
-
46
-
-
84874199537
-
Thymus size and age-related thymic involution: early programming, sexual dimorphism, progenitors and stroma
-
Gui J, Mustachio LM, Su D-M, Craig RW. Thymus size and age-related thymic involution: early programming, sexual dimorphism, progenitors and stroma. Aging Dis (2012) 3:280-90.
-
(2012)
Aging Dis
, vol.3
, pp. 280-290
-
-
Gui, J.1
Mustachio, L.M.2
Su, D.-M.3
Craig, R.W.4
-
47
-
-
79951645047
-
Sex disparity in food allergy: evidence from the PubMed database
-
Kelly C, Gangur V. Sex disparity in food allergy: evidence from the PubMed database. J Allergy (2009) 2009:1-7. doi:10.1155/2009/159845
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(2009)
J Allergy
, vol.2009
, pp. 1-7
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Kelly, C.1
Gangur, V.2
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