-
1
-
-
33646095257
-
Fluorescence in situ hybridization and spectral imaging of coral-associated bacterial communities
-
Ainsworth TD, Fine M, Blackall LL, Hoegh-Guldberg O. (2006). Fluorescence in situ hybridization and spectral imaging of coral-associated bacterial communities. Appl Environ Microbiol 72: 3016-3020.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3016-3020
-
-
Ainsworth, T.D.1
Fine, M.2
Blackall, L.L.3
Hoegh-Guldberg, O.4
-
3
-
-
84869188027
-
Defining a healthy human gut microbiome: Current concepts, future directions, and clinical applications
-
Bäckhed F, Fraser Claire M, Ringel Y, Sanders Mary E, Sartor RB, Sherman Philip M et al. (2012). Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe 12: 611-622.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 611-622
-
-
Bäckhed, F.1
Fraser Claire, M.2
Ringel, Y.3
Sanders Mary, E.4
Sartor, R.B.5
Sherman Philip, M.6
-
4
-
-
84880658726
-
The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissueassociated Endozoicomonas bacteria
-
Bayer T, NeaveMJ, Alsheikh-Hussain A, Aranda M, Yum LK, Mincer T et al. (2013). The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissueassociated Endozoicomonas bacteria. Appl Environ Microbiol 79: 4759-4762.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 4759-4762
-
-
Bayer, T.1
Neave, M.J.2
Alsheikh-Hussain, A.3
Aranda, M.4
Yum, L.K.5
Mincer, T.6
-
5
-
-
80051474173
-
Metaorganisms as the new frontier
-
Bosch TCG, McFall-Ngai MJ. (2011). Metaorganisms as the new frontier. Zoology 114: 185-190.
-
(2011)
Zoology
, vol.114
, pp. 185-190
-
-
Bosch, T.C.G.1
McFall-Ngai, M.J.2
-
6
-
-
84884520631
-
Cnidarian-microbe interactions and the origin of innate immunity in metazoans
-
Bosch TCG. (2013). Cnidarian-microbe interactions and the origin of innate immunity in metazoans. Annu Rev Microbiol 67: 499-518.
-
(2013)
Annu Rev Microbiol
, vol.67
, pp. 499-518
-
-
Bosch, T.C.G.1
-
7
-
-
84877643132
-
Structure and functions of the bacterial microbiota of plants
-
Bulgarelli D, Schlaeppi K, Spaepen S, van Themaat EVL, Schulze-Lefert P. (2013). Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64: 807-838.
-
(2013)
Annu Rev Plant Biol
, vol.64
, pp. 807-838
-
-
Bulgarelli, D.1
Schlaeppi, K.2
Spaepen, S.3
Van Themaat, E.V.L.4
Schulze-Lefert, P.5
-
8
-
-
79957574938
-
Moving pictures of the human microbiome
-
Caporaso J, Lauber C, Costello E, Berg-Lyons D, Gonzalez A. (2011). Moving pictures of the human microbiome. Genome Biol 12: R50.
-
(2011)
Genome Biol
, vol.12
, pp. R50
-
-
Caporaso, J.1
Lauber, C.2
Costello, E.3
Berg-Lyons, D.4
Gonzalez, A.5
-
9
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
10
-
-
84874560078
-
Pluralism or unity in biology: Could microbes hold the secret to life?
-
Cleland C. (2013). Pluralism or unity in biology: could microbes hold the secret to life? Biol Philos 28: 189-204.
-
(2013)
Biol Philos
, vol.28
, pp. 189-204
-
-
Cleland, C.1
-
11
-
-
79955765003
-
Niche specialization of reef-building corals in the mesophotic zone: Metabolic trade-offs between divergent Symbiodinium types
-
Cooper TF, Ulstrup KE, Dandan SS, Heyward AJ, Kühl M, Muirhead A et al. (2010). Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types. Proc Biol Sci 278: 1840-1850.
-
(2010)
Proc Biol Sci
, vol.278
, pp. 1840-1850
-
-
Cooper, T.F.1
Ulstrup, K.E.2
Dandan, S.S.3
Heyward, A.J.4
Kühl, M.5
Muirhead, A.6
-
12
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
-
Daims H, Brühl A, Amann R, Schleifer K-H, Wagner M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.-H.4
Wagner, M.5
-
13
-
-
84881328195
-
New perspectives on the functioning and evolution of photosymbiosis in plankton: Mutualism or parasitism?
-
Decelle J. (2013). New perspectives on the functioning and evolution of photosymbiosis in plankton: mutualism or parasitism? Commun Integr Biol 6: e24560.
-
(2013)
Commun Integr Biol
, vol.6
, pp. e24560
-
-
Decelle, J.1
-
14
-
-
33746061683
-
Greengenes, a chimerachecked 16 S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K et al. (2006). Greengenes, a chimerachecked 16 S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
15
-
-
84874458142
-
From animalcules to an ecosystem: Application of ecological concepts to the human microbiome
-
Fierer N, Ferrenberg S, Flores GE, González A, Kueneman J, Legg T et al. (2012). From animalcules to an ecosystem: application of ecological concepts to the human microbiome. Annu Rev Ecol Evol Syst 43: 137-155.
-
(2012)
Annu Rev Ecol Evol Syst
, vol.43
, pp. 137-155
-
-
Fierer, N.1
Ferrenberg, S.2
Flores, G.E.3
González, A.4
Kueneman, J.5
Legg, T.6
-
16
-
-
79961031452
-
Our microbial selves: What ecology can teach us
-
Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B et al. (2011). Our microbial selves: what ecology can teach us. EMBO Rep 12: 775-784.
-
(2011)
EMBO Rep
, vol.12
, pp. 775-784
-
-
Gonzalez, A.1
Clemente, J.C.2
Shade, A.3
Metcalf, J.L.4
Song, S.5
Prithiviraj, B.6
-
17
-
-
79961080815
-
Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms
-
Gruber-Vodicka HR, Dirks U, Leisch N, Baranyi C, Stoecker K, Bulgheresi S et al. (2011). Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms. Proc Natl Acad Sci 108: 12078-12083.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 12078-12083
-
-
Gruber-Vodicka, H.R.1
Dirks, U.2
Leisch, N.3
Baranyi, C.4
Stoecker, K.5
Bulgheresi, S.6
-
18
-
-
79952007388
-
Soil beneficial bacteria and their role in plant growth promotion: A review
-
Hayat R, Ali S, Amara U, Khalid R, Ahmed I. (2010). Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 60: 579-598.
-
(2010)
Ann Microbiol
, vol.60
, pp. 579-598
-
-
Hayat, R.1
Ali, S.2
Amara, U.3
Khalid, R.4
Ahmed, I.5
-
19
-
-
84861877582
-
Efficient light harvesting in deep-water zooxanthellate corals
-
Kahng S, Hochberg E, Apprill A, Wagner D, Luck D, Perez D et al. (2012). Efficient light harvesting in deep-water zooxanthellate corals. Mar Ecol Progr Ser 455: 65-77.
-
(2012)
Mar Ecol Progr ser
, vol.455
, pp. 65-77
-
-
Kahng, S.1
Hochberg, E.2
Apprill, A.3
Wagner, D.4
Luck, D.5
Perez, D.6
-
20
-
-
0242709343
-
Multispecies microbial mutualisms on coral reefs: The host as a habitat
-
Knowlton N, Rohwer F. (2003). Multispecies microbial mutualisms on coral reefs: the host as a habitat. Am Nat 162: S51-S62.
-
(2003)
Am Nat
, vol.162
, pp. S51-S62
-
-
Knowlton, N.1
Rohwer, F.2
-
21
-
-
84879034602
-
Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases
-
Krediet CJ, Ritchie KB, Paul VJ, Teplitski M. (2013). Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases. Proc Biol Sci 280: 20122328.
-
(2013)
Proc Biol Sci
, vol.280
, pp. 20122328
-
-
Krediet, C.J.1
Ritchie, K.B.2
Paul, V.J.3
Teplitski, M.4
-
22
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16 S rRNA marker gene sequences
-
Langille MGI, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA et al. (2013). Predictive functional profiling of microbial communities using 16 S rRNA marker gene sequences. Nat Biotech 31: 814-821.
-
(2013)
Nat Biotech
, vol.31
, pp. 814-821
-
-
Langille, M.G.I.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
-
23
-
-
84868355101
-
Spatial and species variations in bacterial communities associated with corals from the red sea as revealed by pyrosequencing
-
Lee OO, Yang J, Bougouffa S,Wang Y, Batang Z, Tian R et al. (2012). Spatial and species variations in bacterial communities associated with corals from the red sea as revealed by pyrosequencing. Appl Environ Microbiol 78: 7173-7184.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 7173-7184
-
-
Lee, O.O.1
Yang, J.2
Bougouffa Swang, Y.3
Batang, Z.4
Tian, R.5
-
25
-
-
33845873289
-
Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
Letunic I, Bork P. (2007). Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128.
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
26
-
-
84864460685
-
Defining the core Arabidopsis thaliana root microbiome
-
Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S et al. (2012). Defining the core Arabidopsis thaliana root microbiome. Nature 488: 86-90.
-
(2012)
Nature
, vol.488
, pp. 86-90
-
-
Lundberg, D.S.1
Lebeis, S.L.2
Paredes, S.H.3
Yourstone, S.4
Gehring, J.5
Malfatti, S.6
-
27
-
-
84874479799
-
Animals in a bacterial world, a new imperative for the life sciences
-
McFall-Ngai M, Hadfield MG, Bosch TCG, Carey HV, Domazet-Lošo T, Douglas AE et al. (2013). Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci 110: 3229-3236.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 3229-3236
-
-
McFall-Ngai, M.1
Hadfield, M.G.2
Bosch, T.C.G.3
Carey, H.V.4
Domazet-Lošo, T.5
Douglas, A.E.6
-
29
-
-
84885481609
-
New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches
-
Rastogi G, Coaker GL, Leveau JHJ. (2013). New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches. FEMS Microbiol Lett 348: 1-10.
-
(2013)
FEMS Microbiol Lett
, vol.348
, pp. 1-10
-
-
Rastogi, G.1
Coaker, G.L.2
Leveau, J.H.J.3
-
30
-
-
84899507119
-
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics
-
Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N et al. (2014). Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protoc 9: 1038-1048.
-
(2014)
Nat Protoc
, vol.9
, pp. 1038-1048
-
-
Rinke, C.1
Lee, J.2
Nath, N.3
Goudeau, D.4
Thompson, B.5
Poulton, N.6
-
31
-
-
33750201132
-
Regulation of microbial populations by coral surface mucus and mucus-associated bacteria
-
Ritchie KB. (2006). Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Progr Ser 322: 1-14.
-
(2006)
Mar Ecol Progr ser
, vol.322
, pp. 1-14
-
-
Ritchie, K.B.1
-
32
-
-
77958014961
-
From structure to function: The ecology of host-associated microbial communities
-
Robinson C, Bohannan B, Young V. (2010). From structure to function: the ecology of host-associated microbial communities. Microbiol Mol Biol Rev 74: 453.
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 453
-
-
Robinson, C.1
Bohannan, B.2
Young, V.3
-
33
-
-
0028172253
-
In situ probing of Gram-positive bacteria with high DNA G+C content using 23 S rRNA-targeted oligonucleotides
-
Roller C, Wagner M, Amann R, Ludwig W, Schleifer K-H. (1994). In situ probing of Gram-positive bacteria with high DNA G+C content using 23 S rRNA-targeted oligonucleotides. Microbiology 140: 2849-2858.
-
(1994)
Microbiology
, vol.140
, pp. 2849-2858
-
-
Roller, C.1
Wagner, M.2
Amann, R.3
Ludwig, W.4
Schleifer, K.-H.5
-
36
-
-
33745134693
-
Potential of a 16 S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
-
Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X et al. (2006). Potential of a 16 S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol 72: 4302-4312.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4302-4312
-
-
Sanguin, H.1
Remenant, B.2
Dechesne, A.3
Thioulouse, J.4
Vogel, T.M.5
Nesme, X.6
-
37
-
-
84876850807
-
Aspects of nitrogen-fixing Actinobacteria, in particular free-living and symbiotic Frankia
-
Sellstedt A, Richau KH. (2013). Aspects of nitrogen-fixing Actinobacteria, in particular free-living and symbiotic Frankia. FEMS Microbiol Lett 342: 179-186.
-
(2013)
FEMS Microbiol Lett
, vol.342
, pp. 179-186
-
-
Sellstedt, A.1
Richau, K.H.2
-
38
-
-
84855294263
-
Beyond the Venn diagram: The hunt for a core microbiome
-
Shade A, Handelsman J. (2012). Beyond the Venn diagram: the hunt for a core microbiome. Environ Microbiol 14: 4-12.
-
(2012)
Environ Microbiol
, vol.14
, pp. 4-12
-
-
Shade, A.1
Handelsman, J.2
-
39
-
-
84899957349
-
Functional and phylogenetic assembly of microbial communities in the human microbiome
-
Shafquat A, Joice R, Simmons SL, Huttenhower C. (2014). Functional and phylogenetic assembly of microbial communities in the human microbiome. Trends Microbiol 22: 261-266.
-
(2014)
Trends Microbiol
, vol.22
, pp. 261-266
-
-
Shafquat, A.1
Joice, R.2
Simmons, S.L.3
Huttenhower, C.4
-
40
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored rare biosphere
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR et al. (2006). Microbial diversity in the deep sea and the underexplored rare biosphere. Proc Natl Acad Sci 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
41
-
-
77949674527
-
Threatened corals provide underexplored microbial habitats
-
Sunagawa S, Woodley CM, Medina M. (2010). Threatened corals provide underexplored microbial habitats. PLoS One 5: e9554.
-
(2010)
PLoS One
, vol.5
, pp. e9554
-
-
Sunagawa, S.1
Woodley, C.M.2
Medina, M.3
-
42
-
-
84866464957
-
Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga
-
Thompson AW, Foster RA, Krupke A, Carter BJ, Musat N, Vaulot D et al. (2012). Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337: 1546-1550.
-
(2012)
Science
, vol.337
, pp. 1546-1550
-
-
Thompson, A.W.1
Foster, R.A.2
Krupke, A.3
Carter, B.J.4
Musat, N.5
Vaulot, D.6
|