-
1
-
-
84877310529
-
Structures of the human and Drosophila 80S ribosome
-
Anger, A.M., Armache, J.P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R., Structures of the human and Drosophila 80S ribosome. Nature 497 (2013), 80–85.
-
(2013)
Nature
, vol.497
, pp. 80-85
-
-
Anger, A.M.1
Armache, J.P.2
Berninghausen, O.3
Habeck, M.4
Subklewe, M.5
Wilson, D.N.6
Beckmann, R.7
-
2
-
-
57149089667
-
Regulating amyloid precursor protein synthesis through an internal ribosomal entry site
-
Beaudoin, M.E., Poirel, V.J., Krushel, L.A., Regulating amyloid precursor protein synthesis through an internal ribosomal entry site. Nucleic Acids Res. 36 (2008), 6835–6847.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6835-6847
-
-
Beaudoin, M.E.1
Poirel, V.J.2
Krushel, L.A.3
-
3
-
-
27644484907
-
Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES
-
Boehringer, D., Thermann, R., Ostareck-Lederer, A., Lewis, J.D., Stark, H., Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES. Structure 13 (2005), 1695–1706.
-
(2005)
Structure
, vol.13
, pp. 1695-1706
-
-
Boehringer, D.1
Thermann, R.2
Ostareck-Lederer, A.3
Lewis, J.D.4
Stark, H.5
-
4
-
-
78649549671
-
The ribosomal basis of Diamond-Blackfan anemia: mutation and database update
-
Boria, I., Garelli, E., Gazda, H.T., Aspesi, A., Quarello, P., Pavesi, E., Ferrante, D., Meerpohl, J.J., Kartal, M., Da Costa, L., et al. The ribosomal basis of Diamond-Blackfan anemia: mutation and database update. Hum. Mutat. 31 (2010), 1269–1279.
-
(2010)
Hum. Mutat.
, vol.31
, pp. 1269-1279
-
-
Boria, I.1
Garelli, E.2
Gazda, H.T.3
Aspesi, A.4
Quarello, P.5
Pavesi, E.6
Ferrante, D.7
Meerpohl, J.J.8
Kartal, M.9
Da Costa, L.10
-
5
-
-
0034623234
-
Distinct mRNAs that encode La autoantigen are differentially expressed and contain internal ribosome entry sites
-
Carter, M.S., Sarnow, P., Distinct mRNAs that encode La autoantigen are differentially expressed and contain internal ribosome entry sites. J. Biol. Chem. 275 (2000), 28301–28307.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28301-28307
-
-
Carter, M.S.1
Sarnow, P.2
-
6
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P.D., Wu, X., Jiang, W., Marraffini, L.A., Zhang, F., Multiplex genome engineering using CRISPR/Cas systems. Science 339 (2013), 819–823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
Zhang, F.11
-
7
-
-
0019362645
-
Mutants of Escherichia coli lacking ribosomal protein L1
-
Dabbs, E.R., Ehrlich, R., Hasenbank, R., Schroeter, B.H., Stöffler-Meilicke, M., Stöffler, G., Mutants of Escherichia coli lacking ribosomal protein L1. J. Mol. Biol. 149 (1981), 553–578.
-
(1981)
J. Mol. Biol.
, vol.149
, pp. 553-578
-
-
Dabbs, E.R.1
Ehrlich, R.2
Hasenbank, R.3
Schroeter, B.H.4
Stöffler-Meilicke, M.5
Stöffler, G.6
-
8
-
-
79958064675
-
mTOR phosphorylates IMP2 to promote IGF2 mRNA translation by internal ribosomal entry
-
Dai, N., Rapley, J., Angel, M., Yanik, M.F., Blower, M.D., Avruch, J., mTOR phosphorylates IMP2 to promote IGF2 mRNA translation by internal ribosomal entry. Genes Dev. 25 (2011), 1159–1172.
-
(2011)
Genes Dev.
, vol.25
, pp. 1159-1172
-
-
Dai, N.1
Rapley, J.2
Angel, M.3
Yanik, M.F.4
Blower, M.D.5
Avruch, J.6
-
9
-
-
84873084751
-
Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia
-
De Keersmaecker, K., Atak, Z.K., Li, N., Vicente, C., Patchett, S., Girardi, T., Gianfelici, V., Geerdens, E., Clappier, E., Porcu, M., et al. Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia. Nat. Genet. 45 (2013), 186–190.
-
(2013)
Nat. Genet.
, vol.45
, pp. 186-190
-
-
De Keersmaecker, K.1
Atak, Z.K.2
Li, N.3
Vicente, C.4
Patchett, S.5
Girardi, T.6
Gianfelici, V.7
Geerdens, E.8
Clappier, E.9
Porcu, M.10
-
10
-
-
84953775537
-
Pathways to specialized ribosomes: the Brussels lecture
-
Dinman, J.D., Pathways to specialized ribosomes: the Brussels lecture. J. Mol. Biol. 428:10 Pt B (2016), 2186–2194.
-
(2016)
J. Mol. Biol.
, vol.428
, Issue.10
, pp. 2186-2194
-
-
Dinman, J.D.1
-
11
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R., STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29 (2013), 15–21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
12
-
-
84901361401
-
Molecular profiling of neurons based on connectivity
-
Ekstrand, M.I., Nectow, A.R., Knight, Z.A., Latcha, K.N., Pomeranz, L.E., Friedman, J.M., Molecular profiling of neurons based on connectivity. Cell 157 (2014), 1230–1242.
-
(2014)
Cell
, vol.157
, pp. 1230-1242
-
-
Ekstrand, M.I.1
Nectow, A.R.2
Knight, Z.A.3
Latcha, K.N.4
Pomeranz, L.E.5
Friedman, J.M.6
-
13
-
-
84900435661
-
Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome
-
Fernández, I.S., Bai, X.C., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V., Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome. Cell 157 (2014), 823–831.
-
(2014)
Cell
, vol.157
, pp. 823-831
-
-
Fernández, I.S.1
Bai, X.C.2
Murshudov, G.3
Scheres, S.H.W.4
Ramakrishnan, V.5
-
14
-
-
66849089596
-
Toward a structural understanding of IRES RNA function
-
Filbin, M.E., Kieft, J.S., Toward a structural understanding of IRES RNA function. Curr. Opin. Struct. Biol. 19 (2009), 267–276.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 267-276
-
-
Filbin, M.E.1
Kieft, J.S.2
-
15
-
-
85012884610
-
Pervasive translational regulation of the cell signalling circuitry underlies mammalian development
-
Fujii, K., Shi, Z., Zhulyn, O., Denans, N., Barna, M., Pervasive translational regulation of the cell signalling circuitry underlies mammalian development. Nat. Commun., 8, 2017, 14443.
-
(2017)
Nat. Commun.
, vol.8
, pp. 14443
-
-
Fujii, K.1
Shi, Z.2
Zhulyn, O.3
Denans, N.4
Barna, M.5
-
16
-
-
84997294301
-
Patterns of ribosomal protein expression specify normal and malignant human cells
-
Guimaraes, J.C., Zavolan, M., Patterns of ribosomal protein expression specify normal and malignant human cells. Genome Biol., 17, 2016, 236.
-
(2016)
Genome Biol.
, vol.17
, pp. 236
-
-
Guimaraes, J.C.1
Zavolan, M.2
-
17
-
-
55449107738
-
A translational profiling approach for the molecular characterization of CNS cell types
-
Heiman, M., Schaefer, A., Gong, S., Peterson, J.D., Day, M., Ramsey, K.E., Suárez-Fariñas, M., Schwarz, C., Stephan, D.A., Surmeier, D.J., et al. A translational profiling approach for the molecular characterization of CNS cell types. Cell 135 (2008), 738–748.
-
(2008)
Cell
, vol.135
, pp. 738-748
-
-
Heiman, M.1
Schaefer, A.2
Gong, S.3
Peterson, J.D.4
Day, M.5
Ramsey, K.E.6
Suárez-Fariñas, M.7
Schwarz, C.8
Stephan, D.A.9
Surmeier, D.J.10
-
18
-
-
84958213278
-
Redefining the translational status of 80S monosomes
-
Heyer, E.E., Moore, M.J., Redefining the translational status of 80S monosomes. Cell 164 (2016), 757–769.
-
(2016)
Cell
, vol.164
, pp. 757-769
-
-
Heyer, E.E.1
Moore, M.J.2
-
19
-
-
0023150598
-
HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells
-
Hooper, M., Hardy, K., Handyside, A., Hunter, S., Monk, M., HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells. Nature 326 (1987), 292–295.
-
(1987)
Nature
, vol.326
, pp. 292-295
-
-
Hooper, M.1
Hardy, K.2
Handyside, A.3
Hunter, S.4
Monk, M.5
-
20
-
-
33646133653
-
The UCSC known genes
-
Hsu, F., Kent, W.J., Clawson, H., Kuhn, R.M., Diekhans, M., Haussler, D., The UCSC known genes. Bioinformatics 22 (2006), 1036–1046.
-
(2006)
Bioinformatics
, vol.22
, pp. 1036-1046
-
-
Hsu, F.1
Kent, W.J.2
Clawson, H.3
Kuhn, R.M.4
Diekhans, M.5
Haussler, D.6
-
21
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N.T., Ghaemmaghami, S., Newman, J.R.S., Weissman, J.S., Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324 (2009), 218–223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.S.3
Weissman, J.S.4
-
22
-
-
84864453787
-
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
-
Ingolia, N.T., Brar, G.A., Rouskin, S., McGeachy, A.M., Weissman, J.S., The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat. Protoc. 7 (2012), 1534–1550.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1534-1550
-
-
Ingolia, N.T.1
Brar, G.A.2
Rouskin, S.3
McGeachy, A.M.4
Weissman, J.S.5
-
23
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A., Charpentier, E., A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337 (2012), 816–821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
24
-
-
46549086974
-
Viral IRES RNA structures and ribosome interactions
-
Kieft, J.S., Viral IRES RNA structures and ribosome interactions. Trends Biochem. Sci. 33 (2008), 274–283.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 274-283
-
-
Kieft, J.S.1
-
25
-
-
79955537355
-
Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning
-
Kondrashov, N., Pusic, A., Stumpf, C.R., Shimizu, K., Hsieh, A.C., Xue, S., Ishijima, J., Shiroishi, T., Barna, M., Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning. Cell 145 (2011), 383–397.
-
(2011)
Cell
, vol.145
, pp. 383-397
-
-
Kondrashov, N.1
Pusic, A.2
Stumpf, C.R.3
Shimizu, K.4
Hsieh, A.C.5
Xue, S.6
Ishijima, J.7
Shiroishi, T.8
Barna, M.9
-
26
-
-
72549101167
-
RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs
-
Landry, D.M., Hertz, M.I., Thompson, S.R., RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs. Genes Dev. 23 (2009), 2753–2764.
-
(2009)
Genes Dev.
, vol.23
, pp. 2753-2764
-
-
Landry, D.M.1
Hertz, M.I.2
Thompson, S.R.3
-
27
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 4 (2008), 222–235.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222-235
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
28
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357–359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
29
-
-
84872000078
-
A ribosome-specialized translation initiation pathway is required for cap-dependent translation of vesicular stomatitis virus mRNAs
-
Lee, A.S., Burdeinick-Kerr, R., Whelan, S.P., A ribosome-specialized translation initiation pathway is required for cap-dependent translation of vesicular stomatitis virus mRNAs. Proc. Natl. Acad. Sci. USA 110 (2013), 324–329.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 324-329
-
-
Lee, A.S.1
Burdeinick-Kerr, R.2
Whelan, S.P.3
-
30
-
-
77951965920
-
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
-
MacLean, B., Tomazela, D.M., Shulman, N., Chambers, M., Finney, G.L., Frewen, B., Kern, R., Tabb, D.L., Liebler, D.C., MacCoss, M.J., Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26 (2010), 966–968.
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
Finney, G.L.5
Frewen, B.6
Kern, R.7
Tabb, D.L.8
Liebler, D.C.9
MacCoss, M.J.10
-
31
-
-
84911913371
-
RACK1 controls IRES-mediated translation of viruses
-
Majzoub, K., Hafirassou, M.L., Meignin, C., Goto, A., Marzi, S., Fedorova, A., Verdier, Y., Vinh, J., Hoffmann, J.A., Martin, F., et al. RACK1 controls IRES-mediated translation of viruses. Cell 159 (2014), 1086–1095.
-
(2014)
Cell
, vol.159
, pp. 1086-1095
-
-
Majzoub, K.1
Hafirassou, M.L.2
Meignin, C.3
Goto, A.4
Marzi, S.5
Fedorova, A.6
Verdier, Y.7
Vinh, J.8
Hoffmann, J.A.9
Martin, F.10
-
32
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali, P., Yang, L., Esvelt, K.M., Aach, J., Guell, M., DiCarlo, J.E., Norville, J.E., Church, G.M., RNA-guided human genome engineering via Cas9. Science 339 (2013), 823–826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
33
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M., Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17 (2011), 10–12.
-
(2011)
EMBnet.journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
34
-
-
84882781969
-
Genetics. Mysterious ribosomopathies
-
McCann, K.L., Baserga, S.J., Genetics. Mysterious ribosomopathies. Science 341 (2013), 849–850.
-
(2013)
Science
, vol.341
, pp. 849-850
-
-
McCann, K.L.1
Baserga, S.J.2
-
35
-
-
80051636254
-
Eukaryotic cells producing ribosomes deficient in Rpl1 are hypersensitive to defects in the ubiquitin-proteasome system
-
McIntosh, K.B., Bhattacharya, A., Willis, I.M., Warner, J.R., Eukaryotic cells producing ribosomes deficient in Rpl1 are hypersensitive to defects in the ubiquitin-proteasome system. PLoS ONE, 6, 2011, e23579.
-
(2011)
PLoS ONE
, vol.6
, pp. e23579
-
-
McIntosh, K.B.1
Bhattacharya, A.2
Willis, I.M.3
Warner, J.R.4
-
36
-
-
77951431225
-
Ribosomopathies: human disorders of ribosome dysfunction
-
Narla, A., Ebert, B.L., Ribosomopathies: human disorders of ribosome dysfunction. Blood 115 (2010), 3196–3205.
-
(2010)
Blood
, vol.115
, pp. 3196-3205
-
-
Narla, A.1
Ebert, B.L.2
-
37
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999), 3551–3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
38
-
-
84861990380
-
Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions
-
Picotti, P., Aebersold, R., Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions. Nat. Methods 9 (2012), 555–566.
-
(2012)
Nat. Methods
, vol.9
, pp. 555-566
-
-
Picotti, P.1
Aebersold, R.2
-
39
-
-
77949509078
-
rRNA maturation in yeast cells depleted of large ribosomal subunit proteins
-
Pöll, G., Braun, T., Jakovljevic, J., Neueder, A., Jakob, S., Woolford, J.L. Jr., Tschochner, H., Milkereit, P., rRNA maturation in yeast cells depleted of large ribosomal subunit proteins. PLoS ONE, 4, 2009, e8249.
-
(2009)
PLoS ONE
, vol.4
, pp. e8249
-
-
Pöll, G.1
Braun, T.2
Jakovljevic, J.3
Neueder, A.4
Jakob, S.5
Woolford, J.L.6
Tschochner, H.7
Milkereit, P.8
-
40
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
Ran, F.A., Hsu, P.D., Wright, J., Agarwala, V., Scott, D.A., Zhang, F., Genome engineering using the CRISPR-Cas9 system. Nat. Protoc. 8 (2013), 2281–2308.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 2281-2308
-
-
Ran, F.A.1
Hsu, P.D.2
Wright, J.3
Agarwala, V.4
Scott, D.A.5
Zhang, F.6
-
41
-
-
84893725356
-
Staufen1 senses overall transcript secondary structure to regulate translation
-
Ricci, E.P., Kucukural, A., Cenik, C., Mercier, B.C., Singh, G., Heyer, E.E., Ashar-Patel, A., Peng, L., Moore, M.J., Staufen1 senses overall transcript secondary structure to regulate translation. Nat. Struct. Mol. Biol. 21 (2014), 26–35.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 26-35
-
-
Ricci, E.P.1
Kucukural, A.2
Cenik, C.3
Mercier, B.C.4
Singh, G.5
Heyer, E.E.6
Ashar-Patel, A.7
Peng, L.8
Moore, M.J.9
-
42
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., Smyth, G.K., edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 (2010), 139–140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
43
-
-
69549113277
-
Cell-type-specific isolation of ribosome-associated mRNA from complex tissues
-
Sanz, E., Yang, L., Su, T., Morris, D.R., McKnight, G.S., Amieux, P.S., Cell-type-specific isolation of ribosome-associated mRNA from complex tissues. Proc. Natl. Acad. Sci. USA 106 (2009), 13939–13944.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13939-13944
-
-
Sanz, E.1
Yang, L.2
Su, T.3
Morris, D.R.4
McKnight, G.S.5
Amieux, P.S.6
-
44
-
-
85021888297
-
-
The PyMOL Molecular Graphics System, Version 1.3r1.
-
Schrodinger (2010). The PyMOL Molecular Graphics System, Version 1.3r1.
-
(2010)
-
-
Schrodinger1
-
45
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13 (2003), 2498–2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
46
-
-
84947294063
-
Translating the genome in time and space: specialized ribosomes, RNA regulons, and RNA-binding proteins
-
Shi, Z., Barna, M., Translating the genome in time and space: specialized ribosomes, RNA regulons, and RNA-binding proteins. Annu. Rev. Cell Dev. Biol. 31 (2015), 31–54.
-
(2015)
Annu. Rev. Cell Dev. Biol.
, vol.31
, pp. 31-54
-
-
Shi, Z.1
Barna, M.2
-
47
-
-
85020035121
-
The mammalian ribo-interactome reveals ribosome functional diversity and heterogeneity
-
Simsek, D., Tiu, G.C., Flynn, R.A., Byeon, G.W., Leppek, K., Xu, A.F., Chang, H.Y., Barna, M., The mammalian ribo-interactome reveals ribosome functional diversity and heterogeneity. Cell 169 (2017), 1051–1065.
-
(2017)
Cell
, vol.169
, pp. 1051-1065
-
-
Simsek, D.1
Tiu, G.C.2
Flynn, R.A.3
Byeon, G.W.4
Leppek, K.5
Xu, A.F.6
Chang, H.Y.7
Barna, M.8
-
48
-
-
84947422925
-
Differential stoichiometry among core ribosomal proteins
-
Slavov, N., Semrau, S., Airoldi, E., Budnik, B., van Oudenaarden, A., Differential stoichiometry among core ribosomal proteins. Cell Rep. 13 (2015), 865–873.
-
(2015)
Cell Rep.
, vol.13
, pp. 865-873
-
-
Slavov, N.1
Semrau, S.2
Airoldi, E.3
Budnik, B.4
van Oudenaarden, A.5
-
49
-
-
4644247805
-
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor
-
Spahn, C.M.T., Jan, E., Mulder, A., Grassucci, R.A., Sarnow, P., Frank, J., Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118 (2004), 465–475.
-
(2004)
Cell
, vol.118
, pp. 465-475
-
-
Spahn, C.M.T.1
Jan, E.2
Mulder, A.3
Grassucci, R.A.4
Sarnow, P.5
Frank, J.6
-
50
-
-
0019257050
-
Functional studies on ribosomes lacking protein L1 from mutant Escherichia coli
-
Subramanian, A.R., Dabbs, E.R., Functional studies on ribosomes lacking protein L1 from mutant Escherichia coli. Eur. J. Biochem. 112 (1980), 425–430.
-
(1980)
Eur. J. Biochem.
, vol.112
, pp. 425-430
-
-
Subramanian, A.R.1
Dabbs, E.R.2
-
51
-
-
84941051170
-
STRING v10: protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerta-Cepas, J., Simonovic, M., Roth, A., Santos, A., Tsafou, K.P., et al. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43 (2015), D447–D452.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerta-Cepas, J.6
Simonovic, M.7
Roth, A.8
Santos, A.9
Tsafou, K.P.10
-
52
-
-
84891796629
-
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
-
Tassy, O., Pourquié, O., Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. Nucleic Acids Res. 42 (2014), D882–D891.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D882-D891
-
-
Tassy, O.1
Pourquié, O.2
-
53
-
-
12444345515
-
Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A., Schäfer, J., Kuhn, K., Kienle, S., Schwarz, J., Schmidt, G., Neumann, T., Johnstone, R., Mohammed, A.K., Hamon, C., Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75 (2003), 1895–1904.
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Johnstone, R.8
Mohammed, A.K.9
Hamon, C.10
-
54
-
-
38449116475
-
In vivo stabilization of preinitiation complexes by formaldehyde cross-linking
-
Valásek, L., Szamecz, B., Hinnebusch, A.G., Nielsen, K.H., In vivo stabilization of preinitiation complexes by formaldehyde cross-linking. Methods Enzymol. 429 (2007), 163–183.
-
(2007)
Methods Enzymol.
, vol.429
, pp. 163-183
-
-
Valásek, L.1
Szamecz, B.2
Hinnebusch, A.G.3
Nielsen, K.H.4
-
55
-
-
84905460174
-
Switch from cap- to factorless IRES-dependent 0 and +1 frame translation during cellular stress and dicistrovirus infection
-
Wang, Q.S., Jan, E., Switch from cap- to factorless IRES-dependent 0 and +1 frame translation during cellular stress and dicistrovirus infection. PLoS ONE, 9, 2014, e103601.
-
(2014)
PLoS ONE
, vol.9
, pp. e103601
-
-
Wang, Q.S.1
Jan, E.2
-
56
-
-
84958052052
-
Comparative genetics. Systematic discovery of cap-independent translation sequences in human and viral genomes
-
Weingarten-Gabbay, S., Elias-Kirma, S., Nir, R., Gritsenko, A.A., Stern-Ginossar, N., Yakhini, Z., Weinberger, A., Segal, E., Comparative genetics. Systematic discovery of cap-independent translation sequences in human and viral genomes. Science 351 (2016), 1–24.
-
(2016)
Science
, vol.351
, pp. 1-24
-
-
Weingarten-Gabbay, S.1
Elias-Kirma, S.2
Nir, R.3
Gritsenko, A.A.4
Stern-Ginossar, N.5
Yakhini, Z.6
Weinberger, A.7
Segal, E.8
-
57
-
-
84861418314
-
Specialized ribosomes: a new frontier in gene regulation and organismal biology
-
Xue, S., Barna, M., Specialized ribosomes: a new frontier in gene regulation and organismal biology. Nat. Rev. Mol. Cell Biol. 13 (2012), 355–369.
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 355-369
-
-
Xue, S.1
Barna, M.2
-
58
-
-
84922482101
-
RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation
-
Xue, S., Tian, S., Fujii, K., Kladwang, W., Das, R., Barna, M., RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation. Nature 517 (2015), 33–38.
-
(2015)
Nature
, vol.517
, pp. 33-38
-
-
Xue, S.1
Tian, S.2
Fujii, K.3
Kladwang, W.4
Das, R.5
Barna, M.6
-
59
-
-
0041834903
-
A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation
-
Yi, E.C., Lee, H., Aebersold, R., Goodlett, D.R., A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Commun. Mass Spectrom. 17 (2003), 2093–2098.
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, pp. 2093-2098
-
-
Yi, E.C.1
Lee, H.2
Aebersold, R.3
Goodlett, D.R.4
-
60
-
-
33646543044
-
Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita
-
Yoon, A., Peng, G., Brandenburger, Y., Zollo, O., Xu, W., Rego, E., Ruggero, D., Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita. Science 312 (2006), 902–906.
-
(2006)
Science
, vol.312
, pp. 902-906
-
-
Yoon, A.1
Peng, G.2
Brandenburger, Y.3
Zollo, O.4
Xu, W.5
Rego, E.6
Ruggero, D.7
-
61
-
-
79959699543
-
Mutation in ribosomal protein L21 underlies hereditary hypotrichosis simplex
-
Zhou, C., Zang, D., Jin, Y., Wu, H., Liu, Z., Du, J., Zhang, J., Mutation in ribosomal protein L21 underlies hereditary hypotrichosis simplex. Hum. Mutat. 32 (2011), 710–714.
-
(2011)
Hum. Mutat.
, vol.32
, pp. 710-714
-
-
Zhou, C.1
Zang, D.2
Jin, Y.3
Wu, H.4
Liu, Z.5
Du, J.6
Zhang, J.7
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