-
1
-
-
84876532610
-
Database resources of the National Center for Biotechnology Information
-
NCBI Resource Coordinators.
-
NCBI Resource Coordinators. (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 41, D8-D20.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
-
2
-
-
84874271270
-
NCBI GEO: Archive for functional genomics data sets-update
-
Barrett, T., Wilhite, S.E., Ledoux, P., Evangelista, C., Kim, I.F., Tomashevsky, M., Marshall, K.A., Phillippy, K.H., Sherman, P.M., Holko, M. et al. (2013) NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res., 41, D991-D995.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
-
3
-
-
84876097557
-
ArrayExpress update-trends in database growth and links to data analysis tools
-
Rustici, G., Kolesnikov, N., Brandizi, M., Burdett, T., Dylag, M., Emam, I., Farne, A., Hastings, E., Ison, J., Keays, M. et al. (2013) ArrayExpress update-trends in database growth and links to data analysis tools. Nucleic Acids Res., 41, D987-D990.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Rustici, G.1
Kolesnikov, N.2
Brandizi, M.3
Burdett, T.4
Dylag, M.5
Emam, I.6
Farne, A.7
Hastings, E.8
Ison, J.9
Keays, M.10
-
4
-
-
84875391572
-
Ensembl 2013
-
Flicek, P., Ahmed, I., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S. et al. (2013) Ensembl 2013. Nucleic Acids Res., 41, D48-D55.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
-
5
-
-
34147122065
-
Mendelian inheritance in man and its online version
-
McKusick, V.A. (2007) Mendelian inheritance in man and its online version, OMIM. Am. J. Hum. Genet., 80, 588-604.
-
(2007)
OMIM. Am. J. Hum. Genet.
, vol.80
, pp. 588-604
-
-
McKusick, V.A.1
-
6
-
-
84859727275
-
The Mouse Genome Database (MGD): Comprehensive resource for genetics and genomics of the laboratory mouse
-
Eppig, J.T., Blake, J.A., Bult, C.J., Kadin, J.A. and Richardson, J.E. (2012) The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res., 40, D881-D886.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Eppig, J.T.1
Blake, J.A.2
Bult, C.J.3
Kadin, J.A.4
Richardson, J.E.5
-
7
-
-
78651364359
-
ZFIN: Enhancements and updates to the Zebrafish Model Organism Database
-
Bradford, Y., Conlin, T., Dunn, N., Fashena, D., Frazer, K., Howe, D.G., Knight, J., Mani, P., Martin, R., Moxon, S.A. et al. (2011) ZFIN: enhancements and updates to the Zebrafish Model Organism Database. Nucleic Acids Res., 39, D822-D829.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Bradford, Y.1
Conlin, T.2
Dunn, N.3
Fashena, D.4
Frazer, K.5
Howe, D.G.6
Knight, J.7
Mani, P.8
Martin, R.9
Moxon, S.A.10
-
8
-
-
79958080327
-
Evolutionary plasticity of segmentation clock networks
-
Krol, A.J., Roellig, D., Dequeant, M.L., Tassy, O., Glynn, E., Hattem, G., Mushegian, A., Oates, A.C. and Pourquie, O. (2011) Evolutionary plasticity of segmentation clock networks. Development, 138, 2783-2792.
-
(2011)
Development
, vol.138
, pp. 2783-2792
-
-
Krol, A.J.1
Roellig, D.2
Dequeant, M.L.3
Tassy, O.4
Glynn, E.5
Hattem, G.6
Mushegian, A.7
Oates, A.C.8
Pourquie, O.9
-
9
-
-
77749254890
-
Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation
-
Ozbudak, E.M., Tassy, O. and Pourquie, O. (2010) Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Proc. Natl Acad. Sci. USA, 107, 4224-4229.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 4224-4229
-
-
Ozbudak, E.M.1
Tassy, O.2
Pourquie, O.3
-
10
-
-
76749097226
-
Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos
-
Zhang, S.O., Mathur, S., Hattem, G., Tassy, O. and Pourquie, O. (2010) Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos. BMC Genomics, 11, 13.
-
(2010)
BMC Genomics
, vol.11
, pp. 13
-
-
Zhang, S.O.1
Mathur, S.2
Hattem, G.3
Tassy, O.4
Pourquie, O.5
-
11
-
-
78649268796
-
The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program
-
Tassy, O., Dauga, D., Daian, F., Sobral, D., Robin, F., Khoueiry, P., Salgado, D., Fox, V., Caillol, D., Schiappa, R. et al. (2010) The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Genome Res., 20, 1459-1468.
-
(2010)
Genome Res.
, vol.20
, pp. 1459-1468
-
-
Tassy, O.1
Dauga, D.2
Daian, F.3
Sobral, D.4
Robin, F.5
Khoueiry, P.6
Salgado, D.7
Fox, V.8
Caillol, D.9
Schiappa, R.10
-
12
-
-
84856316836
-
Uberon, an integrative multi-species anatomy ontology
-
Mungall, C.J., Torniai, C, Gkoutos, G.V., Lewis, S.E. and Haendel, M.A. (2012) Uberon, an integrative multi-species anatomy ontology. Genome Biol., 13, R5.
-
(2012)
Genome Biol.
, vol.13
-
-
Mungall, C.J.1
Torniai, C.2
Gkoutos, G.V.3
Lewis, S.E.4
Haendel, M.A.5
-
13
-
-
0842283371
-
A reference ontology for biomedical informatics: The Foundational Model of Anatomy
-
Rosse, C. and Mejino, J.L. Jr (2003) A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J. Biomed. Inform., 36, 478-500.
-
(2003)
J. Biomed. Inform.
, vol.36
, pp. 478-500
-
-
Rosse, C.1
Mejino, Jr.J.L.2
-
14
-
-
78651286166
-
The Mouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics
-
Blake, JA., Bult, C.J., Kadin, JA., Richardson, J.E. and Eppig, J.T. (2011) The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res., 39, D842-D848.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Blake, J.A.1
Bult, C.J.2
Kadin, J.A.3
Richardson, J.E.4
Eppig, J.T.5
-
15
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith, B., Ashburner, M., Rosse, C, Bard, J., Bug, W., Ceusters, W., Goldberg, L.J., Eilbeck, K., Ireland, A., Mungall, C.J. et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol, 25, 1251-1255.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
-
16
-
-
84874253819
-
Gene Ontology annotations and resources
-
Gene Ontology Consortium. (2013) Gene Ontology annotations and resources. Nucleic Acids Res., 41, D530-D535.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
-
17
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T.K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S. et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res., 40, D306-D312.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
-
18
-
-
38549146907
-
DBD-taxonomically broad transcription factor predictions: New content and functionality
-
Wilson, D., Charoensawan, V., Kummerfeld, S.K. and Teichmann, SA. (2008) DBD-taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Res., 36, D88-D92.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wilson, D.1
Charoensawan, V.2
Kummerfeld, S.K.3
Teichmann, S.A.4
-
19
-
-
75549086594
-
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
-
Ostlund, G, Schmitt, T., Forslund, K., Kostler, T., Messina, D.N., Roopra, S., Frings, O. and Sonnhammer, E.L. (2010) InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res., 38, D196-D203.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ostlund, G.1
Schmitt, T.2
Forslund, K.3
Kostler, T.4
Messina, D.N.5
Roopra, S.6
Frings, O.7
Sonnhammer, E.L.8
-
20
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
Croft, D., O'Kelly, G, Wu, G, Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G, Jassal, B. et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res., 39, D691-D697.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
-
21
-
-
84876587929
-
The ENCODE project
-
de Souza, N. (2013) The ENCODE project. Nat. Methods, 9, 1046.
-
(2013)
Nat. Methods
, vol.9
, pp. 1046
-
-
De Souza, N.1
-
22
-
-
71649095998
-
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58
-
Yokoyama, S., Ito, Y., Ueno-Kudoh, H., Shimizu, H., Uchibe, K., Albini, S., Mitsuoka, K., Miyaki, S., Kiso, M., Nagai, A. et al. (2009) A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev. Cell, 17, 836-848.
-
(2009)
Dev. Cell
, vol.17
, pp. 836-848
-
-
Yokoyama, S.1
Ito, Y.2
Ueno-Kudoh, H.3
Shimizu, H.4
Uchibe, K.5
Albini, S.6
Mitsuoka, K.7
Miyaki, S.8
Kiso, M.9
Nagai, A.10
-
23
-
-
33748654976
-
ZooDDD: A cross-species database for digital differential display analysis
-
Chen, Y.C, Hsiao, CD., Lin, W.D., Hu, C.M., Hwang, P.P. and Ho, J.M. (2006) ZooDDD: a cross-species database for digital differential display analysis. Bioinformatics, 22, 2180-2182.
-
(2006)
Bioinformatics
, vol.22
, pp. 2180-2182
-
-
Chen, Y.C.1
Hsiao, C.D.2
Lin, W.D.3
Hu, C.M.4
Hwang, P.P.5
Ho, J.M.6
-
24
-
-
84867331444
-
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
-
Smith, C.L. and Eppig, J.T. (2013) The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm. Genome, 23, 653-668.
-
(2013)
Mamm. Genome
, vol.23
, pp. 653-668
-
-
Smith, C.L.1
Eppig, J.T.2
-
25
-
-
77953936166
-
The human phenotype ontology
-
Robinson, P.N. and Mundlos, S. (2010) The human phenotype ontology. Clin. Genet., 77, 525-534.
-
(2010)
Clin. Genet.
, vol.77
, pp. 525-534
-
-
Robinson, P.N.1
Mundlos, S.2
-
26
-
-
3142665525
-
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
-
Beissbarth, T. and Speed, T.P. (2004) GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics, 20, 1464-1465.
-
(2004)
Bioinformatics
, vol.20
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
27
-
-
84886900988
-
The 2q37-deletion syndrome: An update of the clinical spectrum including overweight, brachydactyly and behavioural features in 14 new patients
-
Leroy, C, Landais, E., Briault, S., David, A., Tassy, O., Gruchy, N., Delobel, B., Gregoire, M.J., Leheup, B., Taine, L. et al. (2013) The 2q37-deletion syndrome: an update of the clinical spectrum including overweight, brachydactyly and behavioural features in 14 new patients. Eur J Hum Genet., 21, 602-640.
-
(2013)
Eur J Hum Genet.
, vol.21
, pp. 602-640
-
-
Leroy, C.1
Landais, E.2
Briault, S.3
David, A.4
Tassy, O.5
Gruchy, N.6
Delobel, B.7
Gregoire, M.J.8
Leheup, B.9
Taine, L.10
-
28
-
-
77349112447
-
Integrating phenotype ontologies across multiple species
-
Mungall, C.J., Gkoutos, GV., Smith, C.L., Haendel, MA., Lewis, S.E. and Ashburner, M. (2010) Integrating phenotype ontologies across multiple species. Genome Biol., 11, R2.
-
(2010)
Genome Biol.
, vol.11
-
-
Mungall, C.J.1
Gkoutos, G.V.2
Smith, C.L.3
Haendel, M.A.4
Lewis, S.E.5
Ashburner, M.6
-
29
-
-
72949116593
-
Linking human diseases to animal models using ontology-based phenotype annotation
-
Washington, N.L., Haendel, MA., Mungall, C.J., Ashburner, M., Westerfield, M. and Lewis, S.E. (2009) Linking human diseases to animal models using ontology-based phenotype annotation. PLoS Biol., 7, e1000247.
-
(2009)
PLoS Biol.
, vol.7
-
-
Washington, N.L.1
Haendel, M.A.2
Mungall, C.J.3
Ashburner, M.4
Westerfield, M.5
Lewis, S.E.6
-
30
-
-
80054087451
-
PhenomeNET: A whole-phenome approach to disease gene discovery
-
Hoehndorf, R., Schofield, P.N. and Gkoutos, GV. (2011) PhenomeNET: a whole-phenome approach to disease gene discovery. Nucleic Acids Res., 39, e119.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Hoehndorf, R.1
Schofield, P.N.2
Gkoutos, G.V.3
-
31
-
-
10744223651
-
Role of TBX1 in human del22q11.2 syndrome
-
Yagi, H, Furutani, Y., Hamada, H., Sasaki, T., Asakawa, S., Minoshima, S., Ichida, F., Joo, K., Kimura, M., Imamura, S. et al. (2003) Role of TBX1 in human del22q11.2 syndrome. Lancet, 362, 1366-1373.
-
(2003)
Lancet
, vol.362
, pp. 1366-1373
-
-
Yagi, H.1
Furutani, Y.2
Hamada, H.3
Sasaki, T.4
Asakawa, S.5
Minoshima, S.6
Ichida, F.7
Joo, K.8
Kimura, M.9
Imamura, S.10
-
32
-
-
29744440528
-
Crkl deficiency disrupts Fgf8 signaling in a mouse model of 22q11 deletion syndromes
-
Moon, A.M., Guris, D.L., Seo, J.H., Li, L., Hammond, J., Talbot, A. and Imamoto, A. (2006) Crkl deficiency disrupts Fgf8 signaling in a mouse model of 22q11 deletion syndromes. Dev. Cell, 10, 71-80.
-
(2006)
Dev. Cell
, vol.10
, pp. 71-80
-
-
Moon, A.M.1
Guris, D.L.2
Seo, J.H.3
Li, L.4
Hammond, J.5
Talbot, A.6
Imamoto, A.7
|