-
1
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert, R., Jeong, H., and Barabasi, A.-L. (2000). Error and attack tolerance of complex networks. Nature 406, 378-382. doi: 10.1038/35019019
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.-L.3
-
2
-
-
70349682626
-
Googling food webs: can an eigenvector measure species', Importance for Coextinctions?
-
Allesina, S., and Pascual, M. (2009). Googling food webs: can an eigenvector measure species', Importance for Coextinctions? PLoS Comput. Biol. 5:e1000494. doi: 10.1371/journal.pcbi.1000494
-
(2009)
PLoS Comput Biol.
, vol.5
-
-
Allesina, S.1
Pascual, M.2
-
3
-
-
33645053483
-
Distance-based tests for homogeneity of multivariate dispersions
-
Anderson, M. J. (2006). Distance-based tests for homogeneity of multivariate dispersions. Biometrics 62, 245-253. doi: 10.1111/j.1541-0420.2005.00440.x
-
(2006)
Biometrics
, vol.62
, pp. 245-253
-
-
Anderson, M.J.1
-
4
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási, A.-L., and Albert, R. (1999). Emergence of scaling in random networks. Science 286, 509-512. doi: 10.1126/science.286.5439.509
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.-L.1
Albert, R.2
-
6
-
-
65549106061
-
The architecture of mutualistic networks minimizes competition and increases biodiversity
-
Bastolla, U., Fortuna, M. A., Pascual-Garcia, A., Ferrera, A., Luque, B., and Bascompte, J. (2009). The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 458, 1018-1020. doi: 10.1038/nature07950
-
(2009)
Nature
, vol.458
, pp. 1018-1020
-
-
Bastolla, U.1
Fortuna, M.A.2
Pascual-Garcia, A.3
Ferrera, A.4
Luque, B.5
Bascompte, J.6
-
7
-
-
79956087877
-
Directed culturing of microorganisms using metatranscriptomics
-
Bomar, L., Maltz, M., Colston, S., and Graf, J. (2011). Directed culturing of microorganisms using metatranscriptomics. mBio 2:e12-11. doi: 10.1128/mBio.00012-11
-
(2011)
mBio
, vol.2
-
-
Bomar, L.1
Maltz, M.2
Colston, S.3
Graf, J.4
-
8
-
-
0038589165
-
The anatomy of a large-scale hypertextual web search engine
-
Brin, S., and Page, L. (1998). The anatomy of a large-scale hypertextual web search engine. Comput. Netw. Isdn Syst. 30, 107-117. doi: 10.1016/S0169-7552(98)00110-X
-
(1998)
Comput. Netw. Isdn Syst.
, vol.30
, pp. 107-117
-
-
Brin, S.1
Page, L.2
-
9
-
-
41349117788
-
Finding community structure in very large networks
-
Clauset, A., Newman, M. E. J., and Moore, C. (2004). Finding community structure in very large networks. Phys. Rev. E 70:6. doi: 10.1103/physreve.70.066111
-
(2004)
Phys. Rev. E
, vol.70
, pp. 6
-
-
Clauset, A.1
Newman, M.E.J.2
Moore, C.3
-
10
-
-
0037251969
-
The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, Q., Kulam, S. A., et al. (2003). The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucl. Acids Res. 31, 442-443. doi: 10.1093/nar/gkg039
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
-
11
-
-
60549114412
-
Robinsoniella peoriensis gen nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source
-
Cotta, M. A., Whitehead, T. R., Falsen, E., Moore, E., and Lawson, P. A. (2009). Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source. Int. J. Syst. Evol. Microbiol. 59, 150-155. doi: 10.1099/ijs.0.65676-0
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 150-155
-
-
Cotta, M.A.1
Whitehead, T.R.2
Falsen, E.3
Moore, E.4
Lawson, P.A.5
-
12
-
-
84886440497
-
Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent
-
Crost, E. H., Tailford, L. E., Le Gall, G., Fons, M., Henrissat, B., and Juge, N. (2013). Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent. PLoS ONE 8:e76341. doi: 10.1371/journal.pone.0076341
-
(2013)
PLoS ONE
, vol.8
-
-
Crost, E.H.1
Tailford, L.E.2
Le Gall, G.3
Fons, M.4
Henrissat, B.5
Juge, N.6
-
13
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi, G., and Nepusz, T. (2006). The igraph software package for complex network research. Int. J. Complex Syst. 1695.
-
(2006)
Int. J. Complex Syst
, pp. 1695
-
-
Csardi, G.1
Nepusz, T.2
-
14
-
-
84997606238
-
ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins
-
Davenport, E. R., Goodrich, J. K., Bell, J. T., Spector, T. D., Ley, R. E., and Clark, A. G. (2016). ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins. BMC Genomics 17:941. doi: 10.1186/s12864-016-3290-1
-
(2016)
BMC Genomics
, vol.17
, pp. 941
-
-
Davenport, E.R.1
Goodrich, J.K.2
Bell, J.T.3
Spector, T.D.4
Ley, R.E.5
Clark, A.G.6
-
15
-
-
77956631921
-
Improving indicator species analysis by combining groups of sites
-
De Cáceres, M., Legendre, P., and Moretti, M. (2010). Improving indicator species analysis by combining groups of sites. Oikos 119, 1674-1684. doi: 10.1111/j.1600-0706.2010.18334.x
-
(2010)
Oikos
, vol.119
, pp. 1674-1684
-
-
De Cáceres, M.1
Legendre, P.2
Moretti, M.3
-
16
-
-
84939567798
-
A biosynthetic pathway for a prominent class of microbiota-derived bile acids
-
Devlin, A. S., and Fischbach, M. A. (2015). A biosynthetic pathway for a prominent class of microbiota-derived bile acids. Nat. Chem. Biol. 11, 685-690. doi: 10.1038/nchembio.1864
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 685-690
-
-
Devlin, A.S.1
Fischbach, M.A.2
-
17
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., et al. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc. Natl. Acad. Sci. U.S.A. 107, 11971-11975. doi: 10.1073/pnas.1002601107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
-
18
-
-
0035196783
-
Deficiency of reproductive tract alpha(1,2)fucosylated glycans and normal fertility in mice with targeted deletions of the FUT1 or FUT2 alpha(1,2)fucosyltransferase locus
-
Domino, S. E., Zhang, L., Gillespie, P. J., Saunders, T. L., and Lowe, J. B. (2001). Deficiency of reproductive tract alpha(1,2)fucosylated glycans and normal fertility in mice with targeted deletions of the FUT1 or FUT2 alpha(1,2)fucosyltransferase locus. Mol. Cell. Biol. 21, 8336-8345. doi: 10.1128/MCB.21.24.8336-8345.2001
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 8336-8345
-
-
Domino, S.E.1
Zhang, L.2
Gillespie, P.J.3
Saunders, T.L.4
Lowe, J.B.5
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461. doi: 10.1093/bioinformatics/btq461
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
33645102172
-
Species loss and secondary extinctions in simple and complex model communities
-
Eklof, A., and Ebenman, B. (2006). Species loss and secondary extinctions in simple and complex model communities. J. Anim. Ecol. 75, 239-246. doi: 10.1111/j.1365-2656.2006.01041.x
-
(2006)
J. Anim. Ecol.
, vol.75
, pp. 239-246
-
-
Eklof, A.1
Ebenman, B.2
-
21
-
-
78149317654
-
The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea
-
Endt, K., Stecher, B., Chaffron, S., Slack, E., Tchitchek, N., Benecke, A., et al. (2010). The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea. PLoS Pathog. 6:e1001097. doi: 10.1371/journal.ppat.1001097
-
(2010)
PLoS Pathog.
, vol.6
-
-
Endt, K.1
Stecher, B.2
Chaffron, S.3
Slack, E.4
Tchitchek, N.5
Benecke, A.6
-
23
-
-
84968918909
-
Population-level analysis of gut microbiome variation
-
Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., et al. (2016). Population-level analysis of gut microbiome variation. Science 352, 560-564. doi: 10.1126/science.aad3503
-
(2016)
Science
, vol.352
, pp. 560-564
-
-
Falony, G.1
Joossens, M.2
Vieira-Silva, S.3
Wang, J.4
Darzi, Y.5
Faust, K.6
-
24
-
-
33750177351
-
Centrality in social networks conceptual clarification
-
Freeman, L. C. (1979). Centrality in social networks conceptual clarification. Soc. Netw. 1, 215-239. doi: 10.1016/0378-8733(78)90021-7
-
(1979)
Soc. Netw.
, vol.1
, pp. 215-239
-
-
Freeman, L.C.1
-
25
-
-
84865733148
-
Inferring correlation networks from genomic survey data
-
Friedman, J., and Alm, E. J. (2012). Inferring correlation networks from genomic survey data. PLoS Computat. Biol. 8:e1002687. doi: 10.1371/journal.pcbi.1002687
-
(2012)
PLoS Computat. Biol.
, vol.8
-
-
Friedman, J.1
Alm, E.J.2
-
26
-
-
0035981014
-
Universal behavior of load distribution in scale-free networks
-
Goh, K. I., Kahng, B., and Kim, D. (2001). Universal behavior of load distribution in scale-free networks. Phys. Rev. Lett. 87:278701. doi: 10.1103/physrevlett.87.278701
-
(2001)
Phys. Rev. Lett.
, vol.87
, pp. 278701
-
-
Goh, K.I.1
Kahng, B.2
Kim, D.3
-
27
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich, J. K., Waters, J. L., Poole, A. C., Sutter, J. L., Koren, O., Blekhman, R., et al. (2014). Human genetics shape the gut microbiome. Cell 159, 789-799. doi: 10.1016/j.cell.2014.09.053
-
(2014)
Cell
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
-
28
-
-
0033860925
-
Null model analysis of species co-occurrence patterns
-
Gotelli, N. J. (2000). Null model analysis of species co-occurrence patterns. Ecology 81, 2606-2621. doi: 10.1890/0012-9658(2000)081[2606:NMAOSC]2.0.CO;2
-
(2000)
Ecology
, vol.81
, pp. 2606-2621
-
-
Gotelli, N.J.1
-
29
-
-
84907208430
-
Innate lymphoid cells regulate intestinal epithelial cell glycosylation
-
Goto, Y., Obata, T., Kunisawa, J., Sato, S., Ivanov, I. I., Lamichhane, A., et al. (2014). Innate lymphoid cells regulate intestinal epithelial cell glycosylation. Science 345:1254009. doi: 10.1126/science.1254009
-
(2014)
Science
, vol.345
, pp. 1254009
-
-
Goto, Y.1
Obata, T.2
Kunisawa, J.3
Sato, S.4
Ivanov, I.I.5
Lamichhane, A.6
-
30
-
-
84930244273
-
The family rikenellaceae
-
eds E. Rosenberg, E. F. Delong, S. Lory, E. Stackebrandt, and F. Thompson (Berlin: Springer)
-
Graf, J. (2014). "The family rikenellaceae," in The Prokaryotes: Other Major Lineages of Bacteria and The Archaea, eds E. Rosenberg, E. F. Delong, S. Lory, E. Stackebrandt, and F. Thompson (Berlin: Springer), 857-859.
-
(2014)
in The Prokaryotes: Other Major Lineages of Bacteria and The Archaea
, pp. 857-859
-
-
Graf, J.1
-
31
-
-
40449099160
-
Transfer of Bacteroides splanchnicus to Odoribacter gen nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients
-
Hardham, J. M., King, K. W., Dreier, K., Wong, J., Strietzel, C., Eversole, R. R., et al. (2008). Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients. Int. J. Syst. Evol. Microbiol. 58, 103-109. doi: 10.1099/ijs.0.63458-0
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 103-109
-
-
Hardham, J.M.1
King, K.W.2
Dreier, K.3
Wong, J.4
Strietzel, C.5
Eversole, R.R.6
-
32
-
-
84862777474
-
Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation
-
Hill, D. A., Siracusa, M. C., Abt, M. C., Kim, B. S., Kobuley, D., Kubo, M., et al. (2012). Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation. Nat. Med. 18, 538-546. doi: 10.1038/nm.2657
-
(2012)
Nat. Med.
, vol.18
, pp. 538-546
-
-
Hill, D.A.1
Siracusa, M.C.2
Abt, M.C.3
Kim, B.S.4
Kobuley, D.5
Kubo, M.6
-
33
-
-
1542316379
-
Bacterial contributions to mammalian gut development
-
Hooper, L. V. (2004). Bacterial contributions to mammalian gut development. Trends Microbiol. 12, 129-134. doi: 10.1016/j.tim.2004.01.001
-
(2004)
Trends Microbiol.
, vol.12
, pp. 129-134
-
-
Hooper, L.V.1
-
34
-
-
0035054508
-
Glycans as legislators of host-microbial interactions: spanning the spectrum from symbiosis to pathogenicity
-
Hooper, L. V., and Gordon, J. I. (2001). Glycans as legislators of host-microbial interactions: spanning the spectrum from symbiosis to pathogenicity. Glycobiology 11, 1R-10R. doi: 10.1093/glycob/11.2.1R
-
(2001)
Glycobiology
, vol.11
, pp. 1R-10R
-
-
Hooper, L.V.1
Gordon, J.I.2
-
35
-
-
15444357984
-
Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging
-
Ilver, D., Arnqvist, A., Ogren, J., Frick, I.-M., Kersulyte, D., Incecik, E. T., et al. (1998). Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging. Science 279, 373-377. doi: 10.1126/science.279.5349.373
-
(1998)
Science
, vol.279
, pp. 373-377
-
-
Ilver, D.1
Arnqvist, A.2
Ogren, J.3
Frick, I.-M.4
Kersulyte, D.5
Incecik, E.T.6
-
36
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N., and Barabasi, A. L. (2000). The large-scale organization of metabolic networks. Nature 407, 651-654. doi: 10.1038/35036627
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
37
-
-
84885711264
-
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
-
Kashyap, P. C., Marcobal, A., Ursell, L. K., Smits, S. A., Sonnenburg, E. D., Costello, E. K., et al. (2013). Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc. Natl. Acad. Sci. U.S.A. 110, 17059-17064. doi: 10.1073/pnas.1306070110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 17059-17064
-
-
Kashyap, P.C.1
Marcobal, A.2
Ursell, L.K.3
Smits, S.A.4
Sonnenburg, E.D.5
Costello, E.K.6
-
38
-
-
77953882250
-
Picante: R tools for integrating phylogenies and ecology
-
Kembel, S. W., Cowan, P. D., Helmus, M. R., Cornwell, W. K., Morlon, H., Ackerly, D. D., et al. (2010). Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26, 1463-1464. doi: 10.1093/bioinformatics/btq166
-
(2010)
Bioinformatics
, vol.26
, pp. 1463-1464
-
-
Kembel, S.W.1
Cowan, P.D.2
Helmus, M.R.3
Cornwell, W.K.4
Morlon, H.5
Ackerly, D.D.6
-
39
-
-
0033921797
-
Ancient origin of the null allele se428 of the human ABO-secretor locus (FUT2)
-
Koda, Y., Tachida, H., Soejima, M., Takenaka, O., and Kimura, H. (2000). Ancient origin of the null allele se428 of the human ABO-secretor locus (FUT2). J. Mol. Evol. 50, 243-248. doi: 10.1007/s002399910028
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 243-248
-
-
Koda, Y.1
Tachida, H.2
Soejima, M.3
Takenaka, O.4
Kimura, H.5
-
40
-
-
0032967877
-
Distance-based redundancy analysis: testing multispecies responses in multifactorial ecological experiments
-
Legendre, P., and Anderson, M. J. (1999). Distance-based redundancy analysis: testing multispecies responses in multifactorial ecological experiments. Ecol. Monogr. 69, 1-24. doi: 10.1890/0012-9615 (1999)069[0001:DBRATM]2.0.CO;2
-
(1999)
Ecol. Monogr.
, vol.69
, pp. 1-24
-
-
Legendre, P.1
Anderson, M.J.2
-
41
-
-
0034782218
-
Ecologically meaningful transformations for ordination of species data
-
Legendre, P., and Gallagher, E. (2001). Ecologically meaningful transformations for ordination of species data. Oecologia 129, 271-280. doi: 10.1007/s004420100716
-
(2001)
Oecologia
, vol.129
, pp. 271-280
-
-
Legendre, P.1
Gallagher, E.2
-
42
-
-
0038239855
-
Human susceptibility and resistance to Norwalk virus infection
-
Lindesmith, L., Moe, C., Marionneau, S., Ruvoen, N., Jiang, X., Lindbland, L., et al. (2003). Human susceptibility and resistance to Norwalk virus infection. Nat. Med. 9, 548-553. doi: 10.1038/nm860
-
(2003)
Nat. Med.
, vol.9
, pp. 548-553
-
-
Lindesmith, L.1
Moe, C.2
Marionneau, S.3
Ruvoen, N.4
Jiang, X.5
Lindbland, L.6
-
43
-
-
84875366034
-
The role of biogeography in shaping diversity of the intestinal microbiota in house mice
-
Linnenbrink, M., Wang, J., Hardouin, E. A., Künzel, S., Metzler, D., and Baines, J. F. (2013). The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Mol. Ecol. 22, 1904-1916. doi: 10.1111/mec.12206
-
(2013)
Mol. Ecol.
, vol.22
, pp. 1904-1916
-
-
Linnenbrink, M.1
Wang, J.2
Hardouin, E.A.3
Künzel, S.4
Metzler, D.5
Baines, J.F.6
-
44
-
-
0031595630
-
Extensive polymorphism of the FUT2 gene in an African (Xhosa) population of South Africa
-
Liu, Y., Koda, Y., Soejima, M., Pang, H., Schlaphoff, T., Du Toit, E. D., et al. (1998). Extensive polymorphism of the FUT2 gene in an African (Xhosa) population of South Africa. Hum. Genet. 103, 204-210. doi: 10.1007/s004390050808
-
(1998)
Hum. Genet.
, vol.103
, pp. 204-210
-
-
Liu, Y.1
Koda, Y.2
Soejima, M.3
Pang, H.4
Schlaphoff, T.5
Du Toit, E.D.6
-
45
-
-
75449108162
-
Linking biodiversity and ecosystems: towards a unifying ecological theory
-
Loreau, M. (2010). Linking biodiversity and ecosystems: towards a unifying ecological theory. Philos. Trans. R. Soc. B Biol. Sci. 365, 49-60. doi: 10.1098/rstb.2009.0155
-
(2010)
Philos. Trans. R. Soc. B Biol. Sci.
, vol.365
, pp. 49-60
-
-
Loreau, M.1
-
46
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone, C., and Knight, R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235. doi: 10.1128/AEM.71.12.8228-8235.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
47
-
-
71049182586
-
Fut2-null mice display an altered glycosylation profile and impaired BabA-mediated Helicobacter pylori adhesion to gastric mucosa
-
Magalhaes, A., Gomes, J., Ismail, M. N., Haslam, S. M., Mendes, N., Osorio, H., et al. (2009). Fut2-null mice display an altered glycosylation profile and impaired BabA-mediated Helicobacter pylori adhesion to gastric mucosa. Glycobiology 19, 1525-1536. doi: 10.1093/glycob/cwp131
-
(2009)
Glycobiology
, vol.19
, pp. 1525-1536
-
-
Magalhaes, A.1
Gomes, J.2
Ismail, M.N.3
Haslam, S.M.4
Mendes, N.5
Osorio, H.6
-
48
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380. doi: 10.1038/nature03959
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
-
49
-
-
77955398591
-
Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease
-
McGovern, D. P. B., Jones, M. R., Taylor, K. D., Marciante, K., Yan, X., Dubinsky, M., et al. (2010). Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease. Hum. Mol. Genet. 19, 1-9. doi: 10.1093/hmg/ddq248
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 1-9
-
-
McGovern, D.P.B.1
Jones, M.R.2
Taylor, K.D.3
Marciante, K.4
Yan, X.5
Dubinsky, M.6
-
50
-
-
16644365084
-
Tolerance of pollination networks to species extinctions
-
Memmott, J., Waser, N. M., and Price, M. V. (2004). Tolerance of pollination networks to species extinctions. Proc. R. Soc. B-Biol. Sci. 271, 2605-2611. doi: 10.1098/rspb.2004.2909
-
(2004)
Proc. R. Soc. B-Biol. Sci.
, vol.271
, pp. 2605-2611
-
-
Memmott, J.1
Waser, N.M.2
Price, M.V.3
-
51
-
-
35348991032
-
Bacterial symbionts induce a FUT2-dependent fucosylated niche on colonic epithelium via ERK and JNK signaling
-
Meng, D., Newburg, D. S., Young, C., Baker, A., Tonkonogy, S. L., Sartor, R. B., et al. (2007). Bacterial symbionts induce a FUT2-dependent fucosylated niche on colonic epithelium via ERK and JNK signaling. Am. J. Physiol. Gastro. Liv. Physiol. 293, 780-787.
-
(2007)
Am. J. Physiol. Gastro. Liv. Physiol.
, vol.293
, pp. 780-787
-
-
Meng, D.1
Newburg, D.S.2
Young, C.3
Baker, A.4
Tonkonogy, S.L.5
Sartor, R.B.6
-
52
-
-
84863995610
-
Diversity of interaction types and ecological community stability
-
Mougi, A., and Kondoh, M. (2012). Diversity of interaction types and ecological community stability. Science 337, 349-351. doi: 10.1126/science.1220529
-
(2012)
Science
, vol.337
, pp. 349-351
-
-
Mougi, A.1
Kondoh, M.2
-
53
-
-
69449092649
-
Parasutterella excrementihominis gen nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces
-
Nagai, F., Morotomi, M., Sakon, H., and Tanaka, R. (2009). Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces. Int. J. Syst. Evol. Microbiol. 59, 1793-1797. doi: 10.1099/ijs.0.002519-0
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1793-1797
-
-
Nagai, F.1
Morotomi, M.2
Sakon, H.3
Tanaka, R.4
-
54
-
-
77953318953
-
Alistipes indistinctus sp nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces
-
Nagai, F., Morotomi, M., Watanabe, Y., Sakon, H., and Tanaka, R. (2010). Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. Int. J. Syst. Evol. Microbiol. 60, 1296-1302. doi: 10.1099/ijs.0.014571-0
-
(2010)
Int. J. Syst. Evol. Microbiol.
, vol.60
, pp. 1296-1302
-
-
Nagai, F.1
Morotomi, M.2
Watanabe, Y.3
Sakon, H.4
Tanaka, R.5
-
55
-
-
0037270375
-
The role of indigenous microflora in the development of murine intestinal fucosyl- and sialyltransferases
-
Nanthakumar, N. N., Dai, D., Newburg, D. S., and Walker, W. A. (2003). The role of indigenous microflora in the development of murine intestinal fucosyl- and sialyltransferases. FASEB J. 17, 44-46.
-
(2003)
FASEB J.
, vol.17
, pp. 44-46
-
-
Nanthakumar, N.N.1
Dai, D.2
Newburg, D.S.3
Walker, W.A.4
-
56
-
-
0025176078
-
Fucosylated oligosaccharides of human milk protect suckling mice from heat-stabile enterotoxin of Escherichia coli
-
Newburg, D. S., Pickering, L. K., Mccluer, R. H., and Cleary, T. G. (1990). Fucosylated oligosaccharides of human milk protect suckling mice from heat-stabile enterotoxin of Escherichia coli. J. Infect. Dis. 162, 1075-1080. doi: 10.1093/infdis/162.5.1075
-
(1990)
J. Infect. Dis.
, vol.162
, pp. 1075-1080
-
-
Newburg, D.S.1
Pickering, L.K.2
Mccluer, R.H.3
Cleary, T.G.4
-
57
-
-
37649028224
-
Finding and evaluating community structure in networks
-
Newman, M. E. J., and Girvan, M. (2004). Finding and evaluating community structure in networks. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 69:026113. doi: 10.1103/physreve.69.026113
-
(2004)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.69
, pp. 026113
-
-
Newman, M.E.J.1
Girvan, M.2
-
58
-
-
84885573828
-
Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
-
Ng, K. M., Ferreyra, J. A., Higginbottom, S. K., Lynch, J. B., Kashyap, P. C., Gopinath, S., et al. (2013). Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502, 96-99. doi: 10.1038/nature12503
-
(2013)
Nature
, vol.502
, pp. 96-99
-
-
Ng, K.M.1
Ferreyra, J.A.2
Higginbottom, S.K.3
Lynch, J.B.4
Kashyap, P.C.5
Gopinath, S.6
-
59
-
-
85020668593
-
-
Vegan: Community Ecology Package. 1.17-6 ed
-
Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., O'hara, R. B., Simpson, G. L., et al. (2011). Vegan: Community Ecology Package. 1.17-6 ed. Available at: http://CRAN.R-project.org
-
(2011)
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
O'hara, R.B.5
Simpson, G.L.6
-
60
-
-
84870501494
-
Fucose sensing regulates bacterial intestinal colonization
-
Pacheco, A. R., Curtis, M. M., Ritchie, J. M., Munera, D., Waldor, M. K., Moreira, C. G., et al. (2012). Fucose sensing regulates bacterial intestinal colonization. Nature 492, 113-117. doi: 10.1038/nature11623
-
(2012)
Nature
, vol.492
, pp. 113-117
-
-
Pacheco, A.R.1
Curtis, M.M.2
Ritchie, J.M.3
Munera, D.4
Waldor, M.K.5
Moreira, C.G.6
-
61
-
-
0035208811
-
Polymorphism of the human ABO-secretor locus (FUT2) in four populations in Asia: indication of distinct Asian subpopulations
-
Pang, H., Koda, Y., Soejima, M., Fujitani, N., Ogaki, T., Saito, A., et al. (2001). Polymorphism of the human ABO-secretor locus (FUT2) in four populations in Asia: indication of distinct Asian subpopulations. Ann. Hum. Genet. 65, 429-437. doi: 10.1046/j.1469-1809.2001.6550429.x
-
(2001)
Ann. Hum. Genet.
, vol.65
, pp. 429-437
-
-
Pang, H.1
Koda, Y.2
Soejima, M.3
Fujitani, N.4
Ogaki, T.5
Saito, A.6
-
62
-
-
84908075358
-
Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen
-
Pham, T. A. N., Clare, S., Goulding, D., Arasteh, J. M., Stares, M. D., Browne, H. P., et al. (2014). Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen. Cell Host Microbe 16, 504-516. doi: 10.1016/j.chom.2014.08.017
-
(2014)
Cell Host Microbe
, vol.16
, pp. 504-516
-
-
Pham, T.A.N.1
Clare, S.2
Goulding, D.3
Arasteh, J.M.4
Stares, M.D.5
Browne, H.P.6
-
63
-
-
84908403149
-
Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness
-
Pickard, J. M., Maurice, C. F., Kinnebrew, M. A., Abt, M. C., Schenten, D., Golovkina, T. V., et al. (2014). Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness. Nature 514, 638-641. doi: 10.1038/nature13823
-
(2014)
Nature
, vol.514
, pp. 638-641
-
-
Pickard, J.M.1
Maurice, C.F.2
Kinnebrew, M.A.3
Abt, M.C.4
Schenten, D.5
Golovkina, T.V.6
-
64
-
-
83855161149
-
-
Pinheiro, J., Bates, D., Debroy, S., Sarkar, D., and Team, R.D. C. (2011). Nlme: Linear and Nonlinear Mixed Effects Models. Available at: http://CRAN.R-project.org
-
(2011)
Nlme: Linear and Nonlinear Mixed Effects Models
-
-
Pinheiro, J.1
Bates, D.2
Debroy, S.3
Sarkar, D.4
Team, R.D.C.5
-
65
-
-
77949718257
-
FastTree 2 - approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S., and Arkin, A. P. (2010). FastTree 2 - approximately maximum-likelihood trees for large alignments. PLoS ONE 5:e9490. doi: 10.1371/journal.pone.0009490
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
67
-
-
84967195417
-
The evolution of cooperation within the gut microbiota
-
Rakoff-Nahoum, S., Foster, K. R., and Comstock, L. E. (2016). The evolution of cooperation within the gut microbiota. Nature 533, 255-259. doi: 10.1038/nature17626
-
(2016)
Nature
, vol.533
, pp. 255-259
-
-
Rakoff-Nahoum, S.1
Foster, K.R.2
Comstock, L.E.3
-
68
-
-
0000442911
-
The use and interpretation of principal component analysis in applied research. sankhyā
-
Rao, C. R. (1964). The use and interpretation of principal component analysis in applied research. sankhyā. Ind. J. Statis. Ser. A (1961-2002) 26, 329-358.
-
(1964)
Ind. J. Statis. Ser. A (1961-2002)
, vol.26
, pp. 329-358
-
-
Rao, C.R.1
-
69
-
-
85020625774
-
-
Ph.d. thesis, Christian-Albrechts-Universität, Kiel.
-
Rausch, P., Baines, J. F., and Schulenburg, H. (2015a). The Influence of Blood-Group-Related Antigens on the Intestinal Microbiome. Ph.d. thesis, Christian-Albrechts-Universität, Kiel.
-
(2015)
The Influence of Blood-Group-Related Antigens on the Intestinal Microbiome
-
-
Rausch, P.1
Baines, J.F.2
Schulenburg, H.3
-
70
-
-
82755168804
-
Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype
-
Rausch, P., Rehman, A., Künzel, S., Häsler, R., Ott, S. J., Schreiber, S., et al. (2011). Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proc. Natl. Acad. Sci. U.S.A. 108, 19030-19035. doi: 10.1073/pnas.1106408108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 19030-19035
-
-
Rausch, P.1
Rehman, A.2
Künzel, S.3
Häsler, R.4
Ott, S.J.5
Schreiber, S.6
-
71
-
-
84938807601
-
Expression of the blood-group-related gene B4galnt2 alters susceptibility to Salmonella infection
-
Rausch, P., Steck, N., Suwandi, A., Seidel, J. A., Künzel, S., Bhullar, K., et al. (2015b). Expression of the blood-group-related gene B4galnt2 alters susceptibility to Salmonella infection. PLoS Pathog. 11:e1005008. doi: 10.1371/journal.ppat.1005008
-
(2015)
PLoS Pathog.
, vol.11
-
-
Rausch, P.1
Steck, N.2
Suwandi, A.3
Seidel, J.A.4
Künzel, S.5
Bhullar, K.6
-
72
-
-
0013238319
-
Campylobacter jejuni binds Intestinal H(O) antigen (Fuca1, 2Galß1, 4GlcNAc), and Fucosyloligosaccharides of human milk inhibit its binding and infection
-
Ruiz-Palacios, G. M., Cervantes, L. E., Ramos, P., Chavez-Munguia, B., and Newburg, D. S. (2003). Campylobacter jejuni binds Intestinal H(O) antigen (Fuca1, 2Galß1, 4GlcNAc), and Fucosyloligosaccharides of human milk inhibit its binding and infection. J. Biol. Chem. 278, 14112-14120. doi: 10.1074/jbc.M207744200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 14112-14120
-
-
Ruiz-Palacios, G.M.1
Cervantes, L.E.2
Ramos, P.3
Chavez-Munguia, B.4
Newburg, D.S.5
-
73
-
-
72949107142
-
Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., et al. (2009). Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541. doi: 10.1128/AEM.01541-09
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
74
-
-
77956808652
-
Robinsoniella peoriensis bacteremia in a patient with pancreatic cancer
-
Shen, D., Chen, R., Ye, L., Luo, Y., and Tang, Y.-W. (2010). Robinsoniella peoriensis bacteremia in a patient with pancreatic cancer. J. Clin. Microbiol. 48, 3448-3450. doi: 10.1128/JCM.00477-10
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 3448-3450
-
-
Shen, D.1
Chen, R.2
Ye, L.3
Luo, Y.4
Tang, Y.-W.5
-
75
-
-
79952748287
-
Unravelling the effects of the environment and host genotype on the gut microbiome
-
Spor, A., Koren, O., and Ley, R. (2011). Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 9, 279-290. doi: 10.1038/nrmicro2540
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 279-290
-
-
Spor, A.1
Koren, O.2
Ley, R.3
-
76
-
-
84862623932
-
Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
-
Staubach, F., Künzel, S., Baines, A. C., Yee, A., Mcgee, B. M., Bäckhed, F., et al. (2012). Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME J. 6, 1345-1355. doi: 10.1038/ismej.2011.204
-
(2012)
ISME J.
, vol.6
, pp. 1345-1355
-
-
Staubach, F.1
Künzel, S.2
Baines, A.C.3
Yee, A.4
Mcgee, B.M.5
Bäckhed, F.6
-
77
-
-
70449559872
-
-
R package Version 2.6.0
-
Storey, J., Bass, A., Dabney, A., and Robinson, D. (2015). Qvalue: Q-value Estimation for False Discovery Rate Control. R package Version 2.6.0. Available at: http://github.com/jdstorey/qvalue
-
(2015)
Qvalue: Q-value Estimation for False Discovery Rate Control
-
-
Storey, J.1
Bass, A.2
Dabney, A.3
Robinson, D.4
-
78
-
-
0345830652
-
Dysbiosis in inflammatory bowel disease
-
Tamboli, C. P., Neut, C., Desreumaux, P., and Colombel, J. F. (2004). Dysbiosis in inflammatory bowel disease. Gut 53, 1-4. doi: 10.1136/gut.53.1.1
-
(2004)
Gut
, vol.53
, pp. 1-4
-
-
Tamboli, C.P.1
Neut, C.2
Desreumaux, P.3
Colombel, J.F.4
-
79
-
-
84905256618
-
Correlation between interaction strengths drives stability in large ecological networks
-
Tang, S., Pawar, S., and Allesina, S. (2014). Correlation between interaction strengths drives stability in large ecological networks. Ecol. Lett. 17, 1094-1100. doi: 10.1111/ele.12312
-
(2014)
Ecol. Lett.
, vol.17
, pp. 1094-1100
-
-
Tang, S.1
Pawar, S.2
Allesina, S.3
-
80
-
-
78649270064
-
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
-
Tasse, L., Bercovici, J., Pizzut-Serin, S., Robe, P., Tap, J., Klopp, C., et al. (2010). Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res. 20, 1605-1612. doi: 10.1101/gr.108332.110
-
(2010)
Genome Res.
, vol.20
, pp. 1605-1612
-
-
Tasse, L.1
Bercovici, J.2
Pizzut-Serin, S.3
Robe, P.4
Tap, J.5
Klopp, C.6
-
81
-
-
0024676534
-
Non-secretion of blood group antigens and susceptibility to infection by Candida species
-
Thom, S. M., Blackwell, C. C., Maccallum, C. J., Weir, D. M., Brettle, R. P., Kinane, D. F., et al. (1989). Non-secretion of blood group antigens and susceptibility to infection by Candida species. FEMS Microbiol. Lett. 47, 401-405. doi: 10.1111/j.1574-6968.1989.tb02428.x
-
(1989)
FEMS Microbiol. Lett.
, vol.47
, pp. 401-405
-
-
Thom, S.M.1
Blackwell, C.C.2
Maccallum, C.J.3
Weir, D.M.4
Brettle, R.P.5
Kinane, D.F.6
-
82
-
-
0030418734
-
Biodiversity: population versus ecosystem stability
-
Tilman, D. (1996). Biodiversity: population versus ecosystem stability. Ecology 77, 350-363. doi: 10.2307/2265614
-
(1996)
Ecology
, vol.77
, pp. 350-363
-
-
Tilman, D.1
-
83
-
-
84908234204
-
Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism
-
Tong, M., Mchardy, I., Ruegger, P., Goudarzi, M., Kashyap, P. C., Haritunians, T., et al. (2014). Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism. ISME J. 8, 2193-2206. doi: 10.1038/ismej.2014.64
-
(2014)
ISME J.
, vol.8
, pp. 2193-2206
-
-
Tong, M.1
Mchardy, I.2
Ruegger, P.3
Goudarzi, M.4
Kashyap, P.C.5
Haritunians, T.6
-
84
-
-
76349092715
-
Convergent temporal dynamics of the human infant gut microbiota
-
Trosvik, P., Stenseth, N. C., and Rudi, K. (2010). Convergent temporal dynamics of the human infant gut microbiota. ISME J. 4, 151-158. doi: 10.1038/ismej.2009.96
-
(2010)
ISME J.
, vol.4
, pp. 151-158
-
-
Trosvik, P.1
Stenseth, N.C.2
Rudi, K.3
-
85
-
-
33845889108
-
Lactic acid bacteria (LAB) bind to Human B- or H-antigens expressed on intestinal mucosa
-
Uchida, H., Kawai, Y., Kinoshita, H., Kitazawa, H., Miura, K., Shiiba, K., et al. (2006). Lactic acid bacteria (LAB) bind to Human B- or H-antigens expressed on intestinal mucosa. Biosci. Biotechnol. Biochem. 70, 3073-3076. doi: 10.1271/bbb.60407
-
(2006)
Biosci. Biotechnol. Biochem.
, vol.70
, pp. 3073-3076
-
-
Uchida, H.1
Kawai, Y.2
Kinoshita, H.3
Kitazawa, H.4
Miura, K.5
Shiiba, K.6
-
86
-
-
34848819204
-
Facilitation can increase the phylogenetic diversity of plant communities
-
Valiente-Banuet, A., and Verdú, M. (2007). Facilitation can increase the phylogenetic diversity of plant communities. Ecol. Lett. 10, 1029-1036. doi: 10.1111/j.1461-0248.2007.01100.x
-
(2007)
Ecol. Lett.
, vol.10
, pp. 1029-1036
-
-
Valiente-Banuet, A.1
Verdú, M.2
-
87
-
-
26844487796
-
Efficient and simple generation of random simple connected graphs with prescribed degree sequence
-
ed. L. Wang (Berlin: Springer)
-
Viger, F., and Latapy, M. (2005). "Efficient and simple generation of random simple connected graphs with prescribed degree sequence," in Computing and Combinatorics, ed. L. Wang (Berlin: Springer), 440-449.
-
(2005)
in Computing and Combinatorics
, pp. 440-449
-
-
Viger, F.1
Latapy, M.2
-
88
-
-
79960417433
-
Phylogenetic limiting similarity and competitive exclusion
-
Violle, C., Nemergut, D. R., Pu, Z., and Jiang, L. (2011). Phylogenetic limiting similarity and competitive exclusion. Ecol. Lett. 14, 782-787. doi: 10.1111/j.1461-0248.2011.01644.x
-
(2011)
Ecol. Lett.
, vol.14
, pp. 782-787
-
-
Violle, C.1
Nemergut, D.R.2
Pu, Z.3
Jiang, L.4
-
89
-
-
79956257405
-
Secretor genotype FUT2 is strongly associated with the composition of bifidobacteria in the human intestine
-
Wacklin, P., Mäkivuokko, H., Alakulppi, N., Nikkilä, J., Tenkanen, H., Räbinä, J., et al. (2011). Secretor genotype FUT2 is strongly associated with the composition of bifidobacteria in the human intestine. PLoS ONE 6:e20113. doi: 10.1371/journal.pone.0020113
-
(2011)
PLoS ONE
, vol.6
-
-
Wacklin, P.1
Mäkivuokko, H.2
Alakulppi, N.3
Nikkilä, J.4
Tenkanen, H.5
Räbinä, J.6
-
90
-
-
84899648332
-
faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status
-
Wacklin, P., Tuimala, J., Nikkilä, J., Sebastian, T., Mäkivuokko, H., Alakulppi, N., et al. (2014). faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status. PLoS ONE 9:e94863. doi: 10.1371/journal.pone.0094863
-
(2014)
PLoS ONE
, vol.9
-
-
Wacklin, P.1
Tuimala, J.2
Nikkilä, J.3
Sebastian, T.4
Mäkivuokko, H.5
Alakulppi, N.6
-
91
-
-
22144439446
-
pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon
-
Walker, A. W., Duncan, S. H., Mcwilliam Leitch, E. C., Child, M. W., and Flint, H. J. (2005). pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon. Appl. Environ. Microbiol. 71, 3692-3700. doi: 10.1128/AEM.71.7.3692-3700.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3692-3700
-
-
Walker, A.W.1
Duncan, S.H.2
Mcwilliam Leitch, E.C.3
Child, M.W.4
Flint, H.J.5
-
92
-
-
84990998440
-
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota
-
Wang, J., Thingholm, L. B., Skieceviciene, J., Rausch, P., Kummen, M., Hov, J. R., et al. (2016). Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota. Nat. Genet. 48, 1396-1406. doi: 10.1038/ng.3695
-
(2016)
Nat. Genet.
, vol.48
, pp. 1396-1406
-
-
Wang, J.1
Thingholm, L.B.2
Skieceviciene, J.3
Rausch, P.4
Kummen, M.5
Hov, J.R.6
-
93
-
-
34548293679
-
Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. doi: 10.1128/AEM.00062-07
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
94
-
-
0033929368
-
Exploring the phylogenetic structure of ecological communities: an example for rain forest trees
-
Webb, C. O. (2000). Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. Am. Nat. 156, 145-155. doi: 10.1086/303378
-
(2000)
Am. Nat.
, vol.156
, pp. 145-155
-
-
Webb, C.O.1
-
95
-
-
84898763954
-
Selective proliferation of intestinal Barnesiella under fucosyllactose supplementation in mice
-
Weiss, G. A., Chassard, C., and Hennet, T. (2014). Selective proliferation of intestinal Barnesiella under fucosyllactose supplementation in mice. Br. J. Nutr. 111, 1602-1610. doi: 10.1017/S0007114513004200
-
(2014)
Br. J. Nutr.
, vol.111
, pp. 1602-1610
-
-
Weiss, G.A.1
Chassard, C.2
Hennet, T.3
-
96
-
-
84959106176
-
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
-
Weiss, S., Van Treuren, W., Lozupone, C., Faust, K., Friedman, J., Deng, Y., et al. (2016). Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. ISME J. 10, 1669-1681. doi: 10.1038/ismej.2015.235
-
(2016)
ISME J.
, vol.10
, pp. 1669-1681
-
-
Weiss, S.1
Van Treuren, W.2
Lozupone, C.3
Faust, K.4
Friedman, J.5
Deng, Y.6
-
97
-
-
84907228226
-
Fluvial network organization imprints on microbial co-occurrence networks
-
Widder, S., Besemer, K., Singer, G. A., Ceola, S., Bertuzzo, E., Quince, C., et al. (2014). Fluvial network organization imprints on microbial co-occurrence networks. Proc. Natl. Acad. Sci. U.S.A. 111, 12799-12804. doi: 10.1073/pnas.1411723111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 12799-12804
-
-
Widder, S.1
Besemer, K.2
Singer, G.A.3
Ceola, S.4
Bertuzzo, E.5
Quince, C.6
-
98
-
-
0033574013
-
Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis
-
Yachi, S., and Loreau, M. (1999). Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. Proc. Natl. Acad. Sci. U.S.A. 96, 1463-1468. doi: 10.1073/pnas.96.4.1463
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 1463-1468
-
-
Yachi, S.1
Loreau, M.2
-
99
-
-
77955085506
-
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
-
Zaneveld, J. R., Lozupone, C., Gordon, J. I., and Knight, R. (2010). Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives. Nucleic Acids Res. 38, 3869-3879. doi: 10.1093/nar/gkq066
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3869-3879
-
-
Zaneveld, J.R.1
Lozupone, C.2
Gordon, J.I.3
Knight, R.4
-
100
-
-
84870356555
-
Mixed effects modelling for nested data
-
(New York, NY: Springer)
-
Zuur, A. F., Ieno, E. N., Walker, N. J., Saveliev, A. A., and Smith, G. M. (2009). "Mixed effects modelling for nested data," in Mixed Effects Models and Extensions in Ecology With R, (New York, NY: Springer), 101-142. doi: 10.1007/978-0-387-87458-6_5
-
(2009)
in Mixed Effects Models and Extensions in Ecology With R
, pp. 101-142
-
-
Zuur, A.F.1
Ieno, E.N.2
Walker, N.J.3
Saveliev, A.A.4
Smith, G.M.5
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