Fluvial network organization imprints on microbial co-occurrence networks

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 35, 2014, Pages 12799-12804

  Widder, Stefanie ^a   Besemer, Katharina ^a,b   Singer, Gabriel A ^a,c   Ceola, Serena ^d   Bertuzzo, Enrico ^e   Quince, Christopher ^f   Sloan, William T ^f   Rinaldo, Andrea ^e,g   Battin, Tom J ^a,b  

^a UNIVERSITY OF VIENNA   (Austria)

^b Inter University Centre for Aquatic Ecosystem Research   (Austria)

^c LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

^d UNIVERSITY OF BOLOGNA   (Italy)

^e EPFL   (Switzerland)

^f UNIVERSITY OF GLASGOW   (United Kingdom)

^g UNIVERSITY OF PADOVA   (Italy)

Author keywords

Hydrological regime; Stream networks

Indexed keywords

HYDROLOGICAL REGIME; STREAM NETWORKS;

BIODIVERSITY; BIOFILMS; BIOMASS; ECOSYSTEM; ENVIRONMENT; HYDROLOGY; MICROBIOTA; MODELS, STATISTICAL; RIVERS; RNA, RIBOSOMAL, 16S;

EID: 84907228226     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1411723111     Document Type: Article

References (43)

1. Rodriguez-Iturbe I, Rinaldo A (1997) Fractal River Basins: Chance and Self-Organisation (Cambridge Univ Press, Cambridge, UK).
2. de Aguiar MAM, Baranger M, Baptestini EM, Kaufman L, Bar-Yam Y (2009) Global patterns of speciation and diversity. Nature 460(7253):384-387.
3. Fagan WF (2002) Connectivity, fragmentation and extinction risk in dendritic metapopulations. Ecology 83(12):3243-3249.
4. Muneepeerakul R, et al. (2008) Neutral metacommunity models predict fish diversity patterns in Mississippi-Missouri basin. Nature 453(7192):220-222. (Pubitemid 351667972)
5. Carrara F, Altermatt F, Rodriguez-Iturbe I, Rinaldo A (2012) Dendritic connectivity controls biodiversity patterns in experimental metacommunities. Proc Natl Acad Sci USA 109(15):5761-5766.
6. Carrara F, Rinaldo A, Giometto A, Altermatt F (2014) Complex interaction of dendritic connectivity and hierarchical patch size on biodiversity in river-like landscapes. Am Nat 183(1):13-25.
7. Altermatt F (2013) Diversity in riverine metacommunities: A network perspective. Aquat Ecol 47(3):365-377.
8. Besemer K, et al. (2013) Headwaters are critical reservoirs of microbial diversity for fluvial networks. Proc Biol Sci 280(1771):20131760.
9. Brown BL, Swan CM (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems. J Anim Ecol 79(3):571-580.
10. Holyoak M, Leibold MA, Holt RD (2005) Metacommunities: Spatial Dynamics and Ecological Communities (Univ of Chicago Press, Chicago).
11. McCluney KE, et al. (2014) Riverine macrosystems ecology: Sensitivity, resistance, and resilience of whole river basins with human alterations. Front Ecol Environ 12(1):45-58.
12. Montoya JM, Pimm SL, Solé RV (2006) Ecological networks and their fragility. Nature 442(7100):259-264. (Pubitemid 44114895)
13. Stouffer DB, Bascompte J (2011) Compartmentalization increases food-web persistence. Proc Natl Acad Sci USA 108(9):3648-3652.
14. Saavedra S, Stouffer DB, Uzzi B, Bascompte J (2011) Strong contributors to network persistence are the most vulnerable to extinction. Nature 478(7368):233-235.
15. Pocock MJO, Evans DM, Memmott J (2012) The robustness and restoration of a network of ecological networks. Science 335(6071):973-977.
16. Thébault E, Fontaine C (2010) Stability of ecological communities and the architecture of mutualistic and trophic networks. Science 329(5993):853-856.
17. Suweis S, Simini F, Banavar JR, Maritan A (2013) Emergence of structural and dynamical properties of ecological mutualistic networks. Nature 500(7463):449-452.
18. Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 459(7244):193-199.
19. Faust K, Raes J (2012) Microbial interactions: From networks to models. Nat Rev Microbiol 10(8):538-550.
20. Barberán A, Bates ST, Casamayor EO, Fierer N (2012) Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J 6(2):343-351.
21. Steele JA, et al. (2011) Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J 5(9):1414-1425.
22. Eiler A, Heinrich F, Bertilsson S (2012) Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J 6(2):330-342.
23. Freilich S, et al. (2010) The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Res 38(12):3857-3868.
24. Botter G, Basso S, Rodriguez-Iturbe I, Rinaldo A (2013) Resilience of river flow regimes. Proc Natl Acad Sci USA 110(32):12925-12930.
25. Battin TJ, Kaplan LA, Denis Newbold J, Hansen CM (2003) Contributions of microbial biofilms to ecosystem processes in stream mesocosms. Nature 426(6965):439-442. (Pubitemid 37490129)
26. Palmer MA, et al. (2010) Science and regulation. Mountaintop mining consequences. Science 327(5962):148-149.
27. Ceola S, et al. (2014) Hydrologic controls on basin-scale distribution of benthic invertebrates. Water Resour Res 50(4):2903-2920.
28. Botter G, Porporato A, Daly E, Rodriguez-Iturbe I, Rinaldo A (2007) Probabilistic characterization of base flows in river basins: Roles of soil, vegetation and geomorphology. Water Resour Res 43(6):W06404.
29. Sabo JL, Finlay JC, Kennedy T, Post DM (2010) The role of discharge variation in scaling of drainage area and food chain length in rivers. Science 330(6006):965-967.
30. Blenkinsopp SA, Lock MA (2004) The effect of storm-flow on river biofilms. J Phycol 30(5):807-818.
31. Freeman LC (1977) A set of measures of centrality based on betweenness. Sociometry 40(1):35-41.
32. Freeman LC (1980) The gatekeeper, pair-dependency and structural centrality. Qual Quant 14(4):585-592.
33. Fann SL, Borrett SR (2012) Environ centrality reveals the tendency of indirect effects to homogenize the functional importance of species in ecosystems. J Theor Biol 294:74-86.
34. Timoner X, Acuna V, von Schiller D, Sabater S (2012) Functional responses of stream biofilms to flow cessation, desiccation and rewetting. Freshw Biol 57(8):1565-1578.
35. Besemer K, et al. (2007) Biophysical controls on community succession in stream biofilms. Appl Environ Microbiol 73(15):4966-4974. (Pubitemid 47237246)
36. King AJ, Farrer EC, Suding KN, Schmidt SK (2012) Co-occurrence patterns of plants and soil bacteria in the high-alpine subnival zone track environmental harshness. Front Microbiol 3(47):347.
37. Czárán TL, Hoekstra RF, Pagie L (2002) Chemical warfare between microbes promotes biodiversity. Proc Natl Acad Sci USA 99(2):786-790. (Pubitemid 34106588)
38. Benda L, et al. (2004) The network dynamics hypothesis: How channel networks structure riverine habitats. Bioscience 54(5):413-427. (Pubitemid 38641534)
39. Solé RV, Montoya JM (2001) Complexity and fragility in ecological networks. Proc Biol Sci 268(1480):2039-2045. (Pubitemid 32964471)
40. Zhou J, et al. (2010) Functional molecular ecological networks. MBio 1(4):e00169-10.
41. Battin TJ, et al. (2008) Biophysical controls on organic carbon fluxes in fluvial networks. Nat Geosci 1(2):95-100.
42. Quince C, Lanzen A, Davenport R, Turnbaugh P (2011) Removing noise from pyrosequenced amplicons. BMC Bioinf 12:38.
43. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc B 57(1):289-300.