Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 1, 2009, Pages 150-155

  Cotta, Michael A ^a   Whitehead, Terence R ^a   Falsen, Enevold ^b   Moore, Edward ^b   Lawson, Paul A ^c  

^a NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

^c UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; BACTERIAL RNA; BUTYRIC ACID; RNA 16S; SUCCINIC ACID; BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CELL LINEAGE; CLOSTRIDIUM; GRAM POSITIVE BACTERIUM; MANURE; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; ROBINSONIELLA PEORIENSIS; SPECIES COMPARISON; SWINE; TYPE STRAIN; ANIMAL; CLASSIFICATION; DNA SEQUENCE; GENETICS; GRAM POSITIVE INFECTION; HUMAN; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; RNA GENE; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); POSIBACTERIA; SUIDAE;

ANIMALS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GRAM-POSITIVE BACTERIAL INFECTIONS; GRAM-POSITIVE ENDOSPORE-FORMING BACTERIA; HUMANS; MANURE; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SWINE;

EID: 60549114412     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65676-0     Document Type: Article

References (22)

1. Bailey, W. R. & Scott, E. G. (1974). In Diagnostic Microbiology, 4th edn, pp. 376-377. St. Louis, MO: C. V. Mosby.
2. Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S., Henderson, C. & Flint, H. J. (2000). Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654-1661.
3. Bryant, M. P. (1972). Commentary on the Hungate technique for culture of anaerobic bacteria. Am J Clin Nutr 25, 1324-1328.
4. Carlier, J.-P., K'Ouas, G., Bonne, I., Lozniewski, A. & Mory, F. (2004). Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes). Int J Syst Evol Microbiol 54, 1611-1615.
5. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E. (1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
6. Cotta, M. A., Whitehead, T. R. & Zeltwanger, R. L. (2003). Isolation, characterization and comparison of bacteria from swine faeces and manure storage pits. Environ Microbiol 5, 737-745.
7. Downes, J., Munson, M. A., Radford, D. R., Spratt, D. A. & Wade, W. G. (2002). Shuttleworthia satelles gen. nov., sp. nov., isolated from the human oral cavity. Int J Syst Evol Microbiol 52, 1469-1475.
8. Duncan, S. H., Aminov, R. I., Scott, K. P., Louis, P., Stanton, T. B. & Flint, H. J. (2006). Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces. Int J Syst Evol Microbiol 56, 2437-2441.
9. Ezaki, T., Li, N. & Kawamura, Y. (2006). The anaerobic gram-positive cocci. In The Prokaryotes, 3rd edn, vol. 6, pp. 795-808. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
10. Hespell, R. B., Wolf, R. & Bothast, R. J. (1987). Fermentation of xylans by Butyrivibrio fibrisolvens and other ruminal bacteria. Appl Environ Microbiol 53, 2849-2853.
11. Hold, G. L., Pryde, S. E., Russell, V. J., Furrie, E. & Flint, H. J. (2002). Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol Ecol 39, 33-39.
12. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 656-682. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
13. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
14. Leser, T. D., Amenuvor, J. Z., Jensen, T. K., Lindecrona, R. H., Boye, M. & Moller, K. (2002). Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 68, 673-690.
15. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
16. Miller, D. N. (2001). Accumulation and composition of odorous compounds in feedlot soils under aerobic, fermentative, anaerobic respiratory conditions. J Anim Sci 79, 2503-2512.
17. Namsolleck, P., Thiel, R., Lawson, P., Holmstrøm, K., Rajilic, M., Vaughan, E. E., Rigottier-Gois, L., Collins, M. D., de Vos, W. M. & Blaut, M. (2004). Molecular methods for the analysis of gut microbiota. Microb Ecol Health Dis 16, 71-85.
18. Pearson, W. R. & Lipman, D. J. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
19. Shah, H. N., Gharbia, S. E. & Collins, M. D. (1997). The gram-stain, a declining synapomorphy in an emerging evolutionary tree. Rev Med Microbiol 8, 103-110.
20. Simmering, R., Taras, D., Schwiertz, A., Le Blay, G., Gruhl, B., Lawson, P. A., Collins, M. D. & Blaut, M. (2002). Ruminococcus luti sp. nov., isolated from a human faecal sample. Syst Appl Microbiol 25, 189-193.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D. & Doré, J. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65, 4799-4807.