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Volumn 114, Issue 8, 2017, Pages 1847-1854

A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae

Author keywords

biosynthetic gene clusters; natural products; pathway refactoring; synthetic biology

Indexed keywords

BIOCHEMISTRY; BIOLOGY; BIOSYNTHESIS; CLONING; ESCHERICHIA COLI; GENES; MOLECULAR BIOLOGY; THROUGHPUT; YEAST;

EID: 85020672990     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.26309     Document Type: Article
Times cited : (31)

References (22)
  • 2
    • 84893493312 scopus 로고    scopus 로고
    • DNA assembly techniques for next-generation combinatorial biosynthesis of natural products
    • Cobb RE, Ning JC, Zhao H. 2014. DNA assembly techniques for next-generation combinatorial biosynthesis of natural products. J Ind Microbiol Biotechnol 41(2):469–477.
    • (2014) J Ind Microbiol Biotechnol , vol.41 , Issue.2 , pp. 469-477
    • Cobb, R.E.1    Ning, J.C.2    Zhao, H.3
  • 3
    • 0035956988 scopus 로고    scopus 로고
    • One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases
    • Cunningham FX, Jr., Gantt E. 2001. One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases. Proc Natl Acad Sci USA 98(5):2905–2910.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.5 , pp. 2905-2910
    • Cunningham, F.X.1    Gantt, E.2
  • 4
    • 65849183178 scopus 로고    scopus 로고
    • Golden Gate shuffling: A one-pot DNA shuffling method based on Type IIs restriction enzymes
    • Engler C, Gruetzner R, Kandzia R, Marillonnet S. 2009. Golden Gate shuffling: A one-pot DNA shuffling method based on Type IIs restriction enzymes. Plos ONE 4(5):e5553.
    • (2009) Plos ONE , vol.4 , Issue.5
    • Engler, C.1    Gruetzner, R.2    Kandzia, R.3    Marillonnet, S.4
  • 5
    • 84964354517 scopus 로고    scopus 로고
    • Next generation sequencing of actinobacteria for the discovery of novel natural products
    • Gomez-Escribano JP, Alt S, Bibb MJ. 2016. Next generation sequencing of actinobacteria for the discovery of novel natural products. Mar Drugs 14(4):78.
    • (2016) Mar Drugs , vol.14 , Issue.4 , pp. 78
    • Gomez-Escribano, J.P.1    Alt, S.2    Bibb, M.J.3
  • 6
    • 84954443268 scopus 로고    scopus 로고
    • CIDAR MoClo: Improved MoClo assembly standard and new E. coli part library enable rapid combinatorial design for synthetic and traditional biology
    • Iverson SV, Haddock TL, Beal J, Densmore DM. 2016. CIDAR MoClo: Improved MoClo assembly standard and new E. coli part library enable rapid combinatorial design for synthetic and traditional biology. ACS Synth Biol 5(1):99–103.
    • (2016) ACS Synth Biol , vol.5 , Issue.1 , pp. 99-103
    • Iverson, S.V.1    Haddock, T.L.2    Beal, J.3    Densmore, D.M.4
  • 7
    • 84942013003 scopus 로고    scopus 로고
    • A highly characterized yeast toolkit for modular, multipart assembly
    • Lee ME, DeLoache WC, Cervantes B, Dueber JE. 2015. A highly characterized yeast toolkit for modular, multipart assembly. ACS Synth Biol 4(9):975–986.
    • (2015) ACS Synth Biol , vol.4 , Issue.9 , pp. 975-986
    • Lee, M.E.1    DeLoache, W.C.2    Cervantes, B.3    Dueber, J.E.4
  • 8
    • 78149425711 scopus 로고    scopus 로고
    • Novel activity of Rhodobacter sphaeroides spheroidene monooxygenase CrtA expressed in Escherichia coli
    • Lee PC, Holtzapple E, Schmidt-Dannert C. 2010. Novel activity of Rhodobacter sphaeroides spheroidene monooxygenase CrtA expressed in Escherichia coli. Appl Environ Microbiol 76(21):7328–7331.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.21 , pp. 7328-7331
    • Lee, P.C.1    Holtzapple, E.2    Schmidt-Dannert, C.3
  • 9
    • 84896865972 scopus 로고    scopus 로고
    • FairyTALE: A high-throughput TAL effector synthesis platform
    • Liang J, Chao R, Abil Z, Bao Z, Zhao H. 2014. FairyTALE: A high-throughput TAL effector synthesis platform. ACS Synth Biol 3(2):67–73.
    • (2014) ACS Synth Biol , vol.3 , Issue.2 , pp. 67-73
    • Liang, J.1    Chao, R.2    Abil, Z.3    Bao, Z.4    Zhao, H.5
  • 10
    • 84890086658 scopus 로고    scopus 로고
    • Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster
    • Luo Y, Huang H, Liang J, Wang M, Lu L, Shao Z, Cobb RE, Zhao H. 2013. Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster. Nat Commun 4:2894.
    • (2013) Nat Commun , vol.4 , pp. 2894
    • Luo, Y.1    Huang, H.2    Liang, J.3    Wang, M.4    Lu, L.5    Shao, Z.6    Cobb, R.E.7    Zhao, H.8
  • 11
    • 17844400062 scopus 로고    scopus 로고
    • Identification of a carotenoid oxygenase synthesizing acyclic xanthophylls: Combinatorial biosynthesis and directed evolution
    • Mijts BN, Lee PC, Schmidt-Dannert C. 2005. Identification of a carotenoid oxygenase synthesizing acyclic xanthophylls: Combinatorial biosynthesis and directed evolution. Chem Biol 12(4):453–460.
    • (2005) Chem Biol , vol.12 , Issue.4 , pp. 453-460
    • Mijts, B.N.1    Lee, P.C.2    Schmidt-Dannert, C.3
  • 12
    • 84962367258 scopus 로고    scopus 로고
    • Natural products as sources of new drugs from 1981 to 2014
    • Newman DJ, Cragg GM. 2016. Natural products as sources of new drugs from 1981 to 2014. J Nat Prod 79(3):629–661.
    • (2016) J Nat Prod , vol.79 , Issue.3 , pp. 629-661
    • Newman, D.J.1    Cragg, G.M.2
  • 14
    • 33746361202 scopus 로고    scopus 로고
    • Creating carotenoid diversity in E. coli cells using combinatorial and directed evolution strategies
    • Schmidt-Dannert C, Lee PC, Mijts BN. 2006. Creating carotenoid diversity in E. coli cells using combinatorial and directed evolution strategies. Phytochem Rev 5(1):67–74.
    • (2006) Phytochem Rev , vol.5 , Issue.1 , pp. 67-74
    • Schmidt-Dannert, C.1    Lee, P.C.2    Mijts, B.N.3
  • 15
    • 0033941389 scopus 로고    scopus 로고
    • Molecular breeding of carotenoid biosynthetic pathways
    • Schmidt-Dannert C, Umeno D, Arnold FH. 2000. Molecular breeding of carotenoid biosynthetic pathways. Nat Biotechnol 18(7):750–753.
    • (2000) Nat Biotechnol , vol.18 , Issue.7 , pp. 750-753
    • Schmidt-Dannert, C.1    Umeno, D.2    Arnold, F.H.3
  • 16
    • 59649108349 scopus 로고    scopus 로고
    • DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
    • Shao Z, Zhao H, Zhao H. 2009. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 37(2):e16.
    • (2009) Nucleic Acids Res , vol.37 , Issue.2
    • Shao, Z.1    Zhao, H.2    Zhao, H.3
  • 17
    • 84923072157 scopus 로고    scopus 로고
    • Recent advances in combinatorial biosynthesis for drug discovery
    • Sun H, Liu Z, Zhao H, Ang EL. 2015. Recent advances in combinatorial biosynthesis for drug discovery. Drug Des Devel Ther 9:823–833.
    • (2015) Drug Des Devel Ther , vol.9 , pp. 823-833
    • Sun, H.1    Liu, Z.2    Zhao, H.3    Ang, E.L.4
  • 18
    • 0037978128 scopus 로고    scopus 로고
    • A C35 carotenoid biosynthetic pathway
    • Umeno D, Arnold FH. 2003. A C35 carotenoid biosynthetic pathway. Appl Environ Microbiol 69(6):3573–3579.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.6 , pp. 3573-3579
    • Umeno, D.1    Arnold, F.H.2
  • 19
    • 1342304132 scopus 로고    scopus 로고
    • Evolution of a pathway to novel long-chain carotenoids
    • Umeno D, Arnold FH. 2004. Evolution of a pathway to novel long-chain carotenoids. J Bacteriol 186(5):1531–1536.
    • (2004) J Bacteriol , vol.186 , Issue.5 , pp. 1531-1536
    • Umeno, D.1    Arnold, F.H.2
  • 20
    • 14844342448 scopus 로고    scopus 로고
    • Diversifying carotenoid biosynthetic pathways by directed evolution
    • Umeno D, Tobias AV, Arnold FH. 2005. Diversifying carotenoid biosynthetic pathways by directed evolution. Microbiol Mol Biol Rev 69(1):51–78.
    • (2005) Microbiol Mol Biol Rev , vol.69 , Issue.1 , pp. 51-78
    • Umeno, D.1    Tobias, A.V.2    Arnold, F.H.3
  • 21
    • 79951997641 scopus 로고    scopus 로고
    • A modular cloning system for standardized assembly of multigene constructs
    • Weber E, Engler C, Gruetzner R, Werner S, Marillonnet S. 2011. A modular cloning system for standardized assembly of multigene constructs. Plos ONE 6(2):e16765.
    • (2011) Plos ONE , vol.6 , Issue.2
    • Weber, E.1    Engler, C.2    Gruetzner, R.3    Werner, S.4    Marillonnet, S.5
  • 22
    • 85014230646 scopus 로고    scopus 로고
    • The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production
    • Weber T, Kim HU. 2016. The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production. Synth Syst Biotechnol 1(2):69–79.
    • (2016) Synth Syst Biotechnol , vol.1 , Issue.2 , pp. 69-79
    • Weber, T.1    Kim, H.U.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.