FairyTALE: A high-throughput TAL effector synthesis platform

ACS Synthetic Biology

Volumn 3, Issue 2, 2014, Pages 67-73

  Liang, Jing ^a   Chao, Ran ^a   Abil, Zhanar ^a   Bao, Zehua ^a   Zhao, Huimin ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

genome editing; genome engineering; synthetic biology; TAL effector; TALEN

Indexed keywords

DNA; NUCLEASE; RECOMBINANT PROTEIN; RECOMBINANT TRANSCRIPTION ACTIVATOR LIKE EFFECTOR; UNCLASSIFIED DRUG; TRANSACTIVATOR PROTEIN;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; HIGH THROUGHPUT SCREENING; LIQUID; NONHUMAN; PRIORITY JOURNAL; REPRESSOR GENE; ROBOTICS; SEQUENCE ANALYSIS; SYNTHESIS; VALIDATION PROCESS; BACTERIAL GENOME; GENE INACTIVATION; GENETIC ENGINEERING; GENETICS; METABOLISM; PLASMID; PROCEDURES; SYNTHETIC BIOLOGY; XANTHOMONAS;

GENE KNOCKOUT TECHNIQUES; GENETIC ENGINEERING; GENOME, BACTERIAL; PLASMIDS; SYNTHETIC BIOLOGY; TRANS-ACTIVATORS; XANTHOMONAS;

EID: 84896865972     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb400109p     Document Type: Article

References (26)

1. Hockemeyer, D., Wang, H., Kiani, S., Lai, C. S., Gao, Q., Cassady, J. P., Cost, G. J., Zhang, L., Santiago, Y., Miller, J. C., Zeitler, B., Cherone, J. M., Meng, X., Hinkley, S. J., Rebar, E. J., Gregory, P. D., Urnov, F. D., and Jaenisch, R. (2011) Genetic engineering of human pluripotent cells using TALE nucleases Nat. Biotechnol. 29, 731-734
2. Miller, J. C., Tan, S., Qiao, G., Barlow, K. A., Wang, J., Xia, D. F., Meng, X., Paschon, D. E., Leung, E., Hinkley, S. J., Dulay, G. P., Hua, K. L., Ankoudinova, I., Cost, G. J., Urnov, F. D., Zhang, H. S., Holmes, M. C., Zhang, L., Gregory, P. D., and Rebar, E. J. (2011) A TALE nuclease architecture for efficient genome editing Nat. Biotechnol. 29, 143-148
3. Mahfouz, M. M., Li, L., Shamimuzzaman, M., Wibowo, A., Fang, X., and Zhu, J.-K. (2011) De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks Proc. Natl. Acad. Sci. U.S.A. 108, 2623-2628
4. Cermak, T., Doyle, E. L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J. A., Somia, N. V., Bogdanove, A. J., and Voytas, D. F. (2011) Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting Nucleic Acids Res. 39, e82
5. Zhang, F., Cong, L., Lodato, S., Kosuri, S., Church, G. M., and Arlotta, P. (2011) Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription Nat. Biotechnol. 29, 149-153
6. Geiler, R., Scholze, H., Hahn, S., Streubel, J., Bonas, U., Behrens, S.-E., and Boch, J. (2011) Transcriptional activators of human genes with programmable DNA-specificity PLoS One 6, e19509
7. Perez-Pinera, P., Ousterout, D. G., Brunger, J. M., Farin, A. M., Glass, K. A., Guilak, F., Crawford, G. E., Hartemink, A. J., and Gersbach, C. A. (2013) Synergistic and tunable human gene activation by combinations of synthetic transcription factors Nat. Methods 10, 239-242
8. Maeder, M. L., Linder, S. J., Reyon, D., Angstman, J. F., Fu, Y., Sander, J. D., and Joung, J. K. (2013) Robust, synergistic regulation of human gene expression using TALE activators Nat. Methods 10, 243-245
9. Moscou, M. J. and Bogdanove, A. J. (2009) A simple cipher governs DNA recognition by TAL effectors Science 326, 1501
10. Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A., and Bonas, U. (2009) Breaking the code of DNA binding specificity of TAL-Type III effectors Science 326, 1509-1512
11. Sun, N., Abil, Z., and Zhao, H. (2012) Recent advances in targeted genome engineering in mammalian systems Biotechnol. J. 7, 1074-1087
12. Reyon, D., Tsai, S. Q., Khayter, C., Foden, J. A., Sander, J. D., and Joung, J. K. (2012) FLASH assembly of TALENs for high-throughput genome editing Nat. Biotechnol. 30, 460-465
13. Briggs, A. W., Rios, X., Chari, R., Yang, L., Zhang, F., Mali, P., and Church, G. M. (2012) Iterative capped assembly: Rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers Nucleic Acids Res. 40, e117
14. Schmid-Burgk, J. L., Schmidt, T., Kaiser, V., Höning, K., and Hornung, V. (2013) A ligation-independent cloning technique for high-throughput assembly of transcription activator-like effector genes Nat. Biotechnol. 31, 76-81
15. Ding, Q., Lee, Y.-K., Schaefer, E. A. K., Peters, D. T., Veres, A., Kim, K., Kuperwasser, N., Motola, D. L., Meissner, T. B., Hendriks, W. T., Trevisan, M., Gupta, R. M., Moisan, A., Banks, E., Friesen, M., Schinzel, R. T., Xia, F., Tang, A., Xia, Y., Figueroa, E., Wann, A., Ahfeldt, T., Daheron, L., Zhang, F., Rubin, L. L., Peng, L. F., Chung, R. T., Musunuru, K., and Cowan, C. A. (2013) A TALEN genome-editing system for generating human stem cell-based disease models Cell Stem Cell 12, 238-251
16. Kim, Y., Kweon, J., Kim, A., Chon, J. K., Yoo, J. Y., Kim, H. J., Kim, S., Lee, C., Jeong, E., Chung, E., Kim, D., Lee, M. S., Go, E. M., Song, H. J., Kim, H., Cho, N., Bang, D., Kim, S., and Kim, J.-S. (2013) A library of TAL effector nucleases spanning the human genome Nat. Biotechnol. 251-258
17. Engler, C., Kandzia, R., and Marillonnet, S. (2008) A one pot, one step, precision cloning method with high throughput capability PLoS One 3, e3647
18. Cong, L., Zhou, R., Kuo, Y.-C., Cunniff, M., and Zhang, F. (2012) Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains Nat. Commun. 3, 968
19. Sun, N., Liang, J., Abil, Z., and Zhao, H. (2012) Optimized TAL effector nucleases (TALENs) for use in treatment of sickle cell disease Mol. Biosyst. 8, 1255-1263
20. Meckler, J. F., Bhakta, M. S., Kim, M.-S., Ovadia, R., Habrian, C. H., Zykovich, A., Yu, A., Lockwood, S. H., Morbitzer, R., Elsäesser, J., Lahaye, T., Segal, D. J., and Baldwin, E. P. (2013) Quantitative analysis of TALE-DNA interactions suggests polarity effects Nucleic Acids Res. 41, 4118-4128
21. Streubel, J., Blücher, C., Landgraf, A., and Boch, J. (2012) TAL effector RVD specificities and efficiencies Nat. Biotechnol. 30, 593-595
22. Sun, N., Bao, Z., Xiong, X., and Zhao, H. (2013) SunnyTALEN: A second-generation TALEN system for human genome editing Biotechnol. Bioeng. 10.1002/bit.25154
23. Service, R. F. (2006) Gene sequencing. The race for the $1000 genome Science 1544
24. Liang, J., Ning, J. C., and Zhao, H. (2013) Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae Nucleic Acids Res. 41, e54
25. Li, T., Huang, S., Zhao, X., Wright, D. A., Carpenter, S., Spalding, M. H., Weeks, D. P., and Yang, B. (2011) Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes Nucleic Acids Res. 39, 6315-6325
26. Weber, E., Gruetzner, R., Werner, S., Engler, C., and Marillonnet, S. (2011) Assembly of designer TAL effectors by golden gate cloning PLoS One 6, e19722