-
1
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones, P.A. (2012) Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet., 13, 484-492.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
2
-
-
84875129831
-
DNA methylation dynamics in health and disease
-
Bergman, Y. and Cedar, H. (2013) DNA methylation dynamics in health and disease. Nat. Struct. Mol. Biol., 20, 274-281.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 274-281
-
-
Bergman, Y.1
Cedar, H.2
-
3
-
-
84923580247
-
DNMT3A in haematological malignancies
-
Yang, L., Rau, R. and Goodell, M.A. (2015) DNMT3A in haematological malignancies. Nat. Rev. Cancer, 15, 152-165.
-
(2015)
Nat. Rev. Cancer
, vol.15
, pp. 152-165
-
-
Yang, L.1
Rau, R.2
Goodell, M.A.3
-
5
-
-
0037168587
-
The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a
-
Chedin, F., Lieber, M.R. and Hsieh, C.-L. (2002) The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a. Proc. Natl. Acad. Sci. U.S.A., 99, 16916-16921.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16916-16921
-
-
Chedin, F.1
Lieber, M.R.2
Hsieh, C.-L.3
-
6
-
-
17144369504
-
Mechanism of stimulation of catalytic activity of Dnmt3A and Dnmt3B DNA-(cytosine-C5)-methyltransferases by Dnmt3l
-
Gowher, H., Liebert, K., Hermann, A., Xu, G. and Jeltsch, A. (2005) Mechanism of stimulation of catalytic activity of Dnmt3A and Dnmt3B DNA-(cytosine-C5)-methyltransferases by Dnmt3L. J. Biol. Chem., 280, 13341-13348.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13341-13348
-
-
Gowher, H.1
Liebert, K.2
Hermann, A.3
Xu, G.4
Jeltsch, A.5
-
8
-
-
84902197893
-
Reprogramming the methylome: Erasing memory and creating diversity
-
Lee, H.J., Hore, T.A. and Reik, W. (2014) Reprogramming the methylome: erasing memory and creating diversity. Cell Stem Cell, 14, 710-719.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 710-719
-
-
Lee, H.J.1
Hore, T.A.2
Reik, W.3
-
9
-
-
84927513082
-
Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity
-
Jurkowski, T.P., Ravichandran, M. and Stepper, P. (2015) Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity. Clin. Epigenet., 7, 18.
-
(2015)
Clin. Epigenet.
, vol.7
, pp. 18
-
-
Jurkowski, T.P.1
Ravichandran, M.2
Stepper, P.3
-
10
-
-
84923642913
-
Chromatin regulation at the frontier of synthetic biology
-
Keung, A.J., Joung, J.K., Khalil, A.S. and Collins, J.J. (2015) Chromatin regulation at the frontier of synthetic biology. Nat. Rev. Genet., 16, 159-171.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 159-171
-
-
Keung, A.J.1
Joung, J.K.2
Khalil, A.S.3
Collins, J.J.4
-
11
-
-
84958600233
-
Epigenome editing: State of the art, concepts, and perspectives
-
Kungulovski, G. and Jeltsch, A. (2016) Epigenome editing: state of the art, concepts, and perspectives. Trends Genet., 32, 101-113.
-
(2016)
Trends Genet.
, vol.32
, pp. 101-113
-
-
Kungulovski, G.1
Jeltsch, A.2
-
12
-
-
84870583474
-
Epigenetic editing: Targeted rewriting of epigenetic marks to modulate expression of selected target genes
-
de Groote, M.L., Verschure, P.J. and Rots, M.G. (2012) Epigenetic editing: targeted rewriting of epigenetic marks to modulate expression of selected target genes. Nucleic Acids Res., 40, 10596-10613.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10596-10613
-
-
De Groote, M.L.1
Verschure, P.J.2
Rots, M.G.3
-
13
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A. and Charpentier, E. (2012) A Programmable Dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-822.
-
(2012)
Science
, vol.337
, pp. 816-822
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
14
-
-
84949100864
-
Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
-
Thakore, P.I., D'Ippolito, A.M., Song, L., Safi, A., Shivakumar, N.K., Kabadi, A.M., Reddy, T.E., Crawford, G.E. and Gersbach, C.A. (2015) Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements. Nat. Methods, 12, 1143-1149.
-
(2015)
Nat. Methods
, vol.12
, pp. 1143-1149
-
-
Thakore, P.I.1
D'Ippolito, A.M.2
Song, L.3
Safi, A.4
Shivakumar, N.K.5
Kabadi, A.M.6
Reddy, T.E.7
Crawford, G.E.8
Gersbach, C.A.9
-
15
-
-
84929135130
-
Epigenome editing by a CRISPR-Cas9 based acetyltransferase activates genes from promoters and enhancers
-
Hilton, I.B., D'Ippolito, A.M., Vockley, C.M., Thakore, P.I., Crawford, G.E., Reddy, T.E. and Gersbach, C.A. (2015) Epigenome editing by a CRISPR-Cas9 based acetyltransferase activates genes from promoters and enhancers. Nat. Biotechnol., 33, 510-519.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 510-519
-
-
Hilton, I.B.1
D'Ippolito, A.M.2
Vockley, C.M.3
Thakore, P.I.4
Crawford, G.E.5
Reddy, T.E.6
Gersbach, C.A.7
-
16
-
-
84928924333
-
Functional annotation of native enhancers with a cas9-histone demethylase fusion
-
Kearns, N.A., Pham, H., Tabak, B., Genga, R.M., Silverstein, N.J., Garber, M. and Maehr, R. (2015) Functional annotation of native enhancers with a Cas9-histone demethylase fusion. Nat. Methods, 12, 401-403.
-
(2015)
Nat. Methods
, vol.12
, pp. 401-403
-
-
Kearns, N.A.1
Pham, H.2
Tabak, B.3
Genga, R.M.4
Silverstein, N.J.5
Garber, M.6
Maehr, R.7
-
17
-
-
84887104139
-
Orthogonal cas9 proteins for RNA-guided gene regulation and editing
-
Esvelt, K.M., Mali, P., Braff, J.L., Moosburner, M., Yaung, S.J. and Church, G.M. (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat. Methods, 10, 1116-1121.
-
(2013)
Nat. Methods
, vol.10
, pp. 1116-1121
-
-
Esvelt, K.M.1
Mali, P.2
Braff, J.L.3
Moosburner, M.4
Yaung, S.J.5
Church, G.M.6
-
18
-
-
84872865881
-
Targeted methylation and gene silencing of VEGF-A in human cells by using a designed Dnmt3a-Dnmt3l single-chain fusion protein with increased DNA methylation activity
-
Siddique, A.N., Nunna, S., Rajavelu, A., Zhang, Y., Jurkowska, R.Z., Reinhardt, R., Rots, M.G., Ragozin, S., Jurkowski, T.P. and Jeltsch, A. (2013) Targeted methylation and gene silencing of VEGF-A in human cells by using a designed Dnmt3a-Dnmt3L single-chain fusion protein with increased DNA methylation activity. J. Mol. Biol., 425, 479-491.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 479-491
-
-
Siddique, A.N.1
Nunna, S.2
Rajavelu, A.3
Zhang, Y.4
Jurkowska, R.Z.5
Reinhardt, R.6
Rots, M.G.7
Ragozin, S.8
Jurkowski, T.P.9
Jeltsch, A.10
-
19
-
-
84893287073
-
E-CRISP: Fast CRISPR target site identification
-
Heigwer, F., Kerr, G. and Boutros, M. (2014) E-CRISP: fast CRISPR target site identification. Nat. Methods, 11, 122-123.
-
(2014)
Nat. Methods
, vol.11
, pp. 122-123
-
-
Heigwer, F.1
Kerr, G.2
Boutros, M.3
-
20
-
-
84873734105
-
RNA-guided human genome engineering via cas9
-
Mali, P., Yang, L., Esvelt, K.M., Aach, J., Guell, M., DiCarlo, J.E., Norville, J.E. and Church, G.M. (2013) RNA-guided human genome engineering via Cas9. Science, 339, 823-826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
21
-
-
33845443776
-
Cerulean, venus, and VenusY67C FRET reference standards
-
Koushik, S. V, Chen, H., Thaler, C., Puhl, H.L. and Vogel, S.S. (2006) Cerulean, Venus, and VenusY67C FRET reference standards. Biophys. J., 91, L99-L101.
-
(2006)
Biophys. J.
, vol.91
, pp. L99-L101
-
-
Koushik, S.V.1
Chen, H.2
Thaler, C.3
Puhl, H.L.4
Vogel, S.S.5
-
22
-
-
77951850381
-
BISMA-fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
-
Rohde, C., Zhang, Y., Reinhardt, R. and Jeltsch, A. (2010) BISMA-fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences. BMC Bioinformatics, 11, 230.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 230
-
-
Rohde, C.1
Zhang, Y.2
Reinhardt, R.3
Jeltsch, A.4
-
23
-
-
84884907424
-
CRISPR RNA-guided activation of endogenous human genes
-
Maeder, M.L., Linder, S.J., Cascio, V.M., Fu, Y., Ho, Q.H. and Joung, J.K. (2013) CRISPR RNA-guided activation of endogenous human genes. Nat. Methods, 10, 977-979.
-
(2013)
Nat. Methods
, vol.10
, pp. 977-979
-
-
Maeder, M.L.1
Linder, S.J.2
Cascio, V.M.3
Fu, Y.4
Ho, Q.H.5
Joung, J.K.6
-
24
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P. and Lim, W.A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
25
-
-
84900412888
-
Targeted methylation of the epithelial cell adhesion molecule (EpCAM) promoter to silence its expression in ovarian cancer cells
-
Nunna, S., Reinhardt, R., Ragozin, S. and Jeltsch, A. (2014) Targeted methylation of the epithelial cell adhesion molecule (EpCAM) promoter to silence its expression in ovarian cancer cells. PLoS One, 9, e87703.
-
(2014)
PLoS One
, vol.9
, pp. e87703
-
-
Nunna, S.1
Reinhardt, R.2
Ragozin, S.3
Jeltsch, A.4
-
26
-
-
84945446360
-
Stable oncogenic silencing in vivo by programmable and targeted de novo DNA methylation in breast cancer
-
Stolzenburg, S., Beltran, A.S., Swift-Scanlan, T., Rivenbark, A.G., Rashwan, R. and Blancafort, P. (2015) Stable oncogenic silencing in vivo by programmable and targeted de novo DNA methylation in breast cancer. Oncogene, 34, 5427-5435.
-
(2015)
Oncogene
, vol.34
, pp. 5427-5435
-
-
Stolzenburg, S.1
Beltran, A.S.2
Swift-Scanlan, T.3
Rivenbark, A.G.4
Rashwan, R.5
Blancafort, P.6
-
27
-
-
33846686888
-
Chimeric DNA methyltransferases target DNA methylation to specific DNA sequences and repress expression of target genes
-
Li, F., Papworth, M., Minczuk, M., Rohde, C., Zhang, Y., Ragozin, S. and Jeltsch, A. (2007) Chimeric DNA methyltransferases target DNA methylation to specific DNA sequences and repress expression of target genes. Nucleic Acids Res., 35, 100-112.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 100-112
-
-
Li, F.1
Papworth, M.2
Minczuk, M.3
Rohde, C.4
Zhang, Y.5
Ragozin, S.6
Jeltsch, A.7
-
28
-
-
84929012548
-
TALE-mediated epigenetic suppression of CDKN2A increases replication in human fibroblasts
-
Bernstein, D.L., Le Lay, J.E., Ruano, E.G. and Kaestner, K.H. (2015) TALE-mediated epigenetic suppression of CDKN2A increases replication in human fibroblasts. J. Clin. Invest., 125, 1998-2006.
-
(2015)
J. Clin. Invest.
, vol.125
, pp. 1998-2006
-
-
Bernstein, D.L.1
Le Lay, J.E.2
Ruano, E.G.3
Kaestner, K.H.4
-
29
-
-
84880571335
-
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes
-
Gilbert, L.A., Larson, M.H., Morsut, L., Liu, Z., Brar, G.A., Torres, S.E., Stern-Ginossar, N., Brandman, O., Whitehead, E.H., Doudna, J.A. et al. (2013) CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell, 154, 442-451.
-
(2013)
Cell
, vol.154
, pp. 442-451
-
-
Gilbert, L.A.1
Larson, M.H.2
Morsut, L.3
Liu, Z.4
Brar, G.A.5
Torres, S.E.6
Stern-Ginossar, N.7
Brandman, O.8
Whitehead, E.H.9
Doudna, J.A.10
-
30
-
-
57149094671
-
Formation of nucleoprotein filaments by mammalian DNA methyltransferase Dnmt3a in complex with regulator Dnmt3L
-
Jurkowska, R.Z., Anspach, N., Urbanke, C., Jia, D., Reinhardt, R., Nellen, W., Cheng, X. and Jeltsch, A. (2008) Formation of nucleoprotein filaments by mammalian DNA methyltransferase Dnmt3a in complex with regulator Dnmt3L. Nucleic Acids Res., 36, 6656-6663.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6656-6663
-
-
Jurkowska, R.Z.1
Anspach, N.2
Urbanke, C.3
Jia, D.4
Reinhardt, R.5
Nellen, W.6
Cheng, X.7
Jeltsch, A.8
-
31
-
-
84855890772
-
Function and disruption of DNA methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation
-
Rajavelu, A., Jurkowska, R.Z., Fritz, J. and Jeltsch, A. (2012) Function and disruption of DNA methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation. Nucleic Acids Res., 40, 569-580.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 569-580
-
-
Rajavelu, A.1
Jurkowska, R.Z.2
Fritz, J.3
Jeltsch, A.4
-
32
-
-
84908424355
-
Cooperative DNA binding and protein/DNA fiber formation increases the activity of the Dnmt3a DNA methyltransferase
-
Emperle, M., Rajavelu, A., Reinhardt, R., Jurkowska, R.Z. and Jeltsch, A. (2014) Cooperative DNA binding and protein/DNA fiber formation increases the activity of the Dnmt3a DNA methyltransferase. J. Biol. Chem., 289, 29602-29613.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 29602-29613
-
-
Emperle, M.1
Rajavelu, A.2
Reinhardt, R.3
Jurkowska, R.Z.4
Jeltsch, A.5
-
33
-
-
84963941043
-
High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects
-
Kleinstiver, B.P., Pattanayak, V., Prew, M.S., Tsai, S.Q., Nguyen, N.T., Zheng, Z. and Joung, J.K. (2016) High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature, 529, 490-495.
-
(2016)
Nature
, vol.529
, pp. 490-495
-
-
Kleinstiver, B.P.1
Pattanayak, V.2
Prew, M.S.3
Tsai, S.Q.4
Nguyen, N.T.5
Zheng, Z.6
Joung, J.K.7
-
34
-
-
84952943845
-
Rationally engineered cas9 nucleases with improved specificity
-
Slaymaker, I.M., Gao, L., Zetsche, B., Scott, D.A., Yan, W.X. and Zhang, F. (2016) Rationally engineered Cas9 nucleases with improved specificity. Science, 351, 84-88.
-
(2016)
Science
, vol.351
, pp. 84-88
-
-
Slaymaker, I.M.1
Gao, L.2
Zetsche, B.3
Scott, D.A.4
Yan, W.X.5
Zhang, F.6
-
35
-
-
22744434740
-
De novo methylation of nucleosomal DNA by the mammalian dnmt1 and Dnmt3A DNA methyltransferases
-
Gowher, H., Stockdale, C.J., Goyal, R., Ferreira, H., Owen-Hughes, T. and Jeltsch, A. (2005) De novo methylation of nucleosomal DNA by the mammalian Dnmt1 and Dnmt3A DNA methyltransferases. Biochemistry, 44, 9899-9904.
-
(2005)
Biochemistry
, vol.44
, pp. 9899-9904
-
-
Gowher, H.1
Stockdale, C.J.2
Goyal, R.3
Ferreira, H.4
Owen-Hughes, T.5
Jeltsch, A.6
-
36
-
-
53149096921
-
Mouse Dnmt3A preferentially methylates linker DNA and is inhibited by histone H1
-
Takeshima, H., Suetake, I. and Tajima, S. (2008) Mouse Dnmt3a preferentially methylates linker DNA and is inhibited by histone H1. J. Mol. Biol., 383, 810-821.
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 810-821
-
-
Takeshima, H.1
Suetake, I.2
Tajima, S.3
-
37
-
-
80052725628
-
The USP7/Dnmt1 complex stimulates the DNA methylation activity of dnmt1 and regulates the stability of UHRF1
-
Felle, M., Joppien, S., Németh, A., Diermeier, S., Thalhammer, V., Dobner, T., Kremmer, E., Kappler, R. and Längst, G. (2011) The USP7/Dnmt1 complex stimulates the DNA methylation activity of Dnmt1 and regulates the stability of UHRF1. Nucleic Acids Res., 39, 8355-8365.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8355-8365
-
-
Felle, M.1
Joppien, S.2
Németh, A.3
Diermeier, S.4
Thalhammer, V.5
Dobner, T.6
Kremmer, E.7
Kappler, R.8
Längst, G.9
-
38
-
-
84926500478
-
In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse
-
Morselli, M., Pastor, W.A., Montanini, B., Nee, K., Ferrari, R., Fu, K., Bonora, G., Rubbi, L., Clark, A.T., Ottonello, S. et al. (2015) In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife, 4, e06205.
-
(2015)
Elife
, vol.4
, pp. e06205
-
-
Morselli, M.1
Pastor, W.A.2
Montanini, B.3
Nee, K.4
Ferrari, R.5
Fu, K.6
Bonora, G.7
Rubbi, L.8
Clark, A.T.9
Ottonello, S.10
-
39
-
-
84923330509
-
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
-
Baubec, T., Colombo, D.F., Wirbelauer, C., Schmidt, J., Burger, L., Krebs, A.R., Akalin, A. and Schübeler, D. (2015) Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation. Nature, 520, 243-247.
-
(2015)
Nature
, vol.520
, pp. 243-247
-
-
Baubec, T.1
Colombo, D.F.2
Wirbelauer, C.3
Schmidt, J.4
Burger, L.5
Krebs, A.R.6
Akalin, A.7
Schübeler, D.8
-
40
-
-
84979034770
-
Repurposing the CRISPR-Cas9 system for targeted DNA methylation
-
Vojta, A., Dobrinić, P., Tadić, V., Bočkor, L., Korać, P., Julg, B., Klasić, M. and Zoldoš, V. (2016) Repurposing the CRISPR-Cas9 system for targeted DNA methylation. Nucleic Acids Res., 44, 5615-5628.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 5615-5628
-
-
Vojta, A.1
Dobrinić, P.2
Tadić, V.3
Bočkor, L.4
Korać, P.5
Julg, B.6
Klasić, M.7
Zoldoš, V.8
-
41
-
-
84978376788
-
Reprogrammable CRISPR/Cas9-based system for inducing site-specific DNA methylation
-
McDonald, J.I., Celik, H., Rois, L.E., Fishberger, G., Fowler, T., Rees, R., Kramer, A., Martens, A., Edwards, J.R. and Challen, G.A. (2016) Reprogrammable CRISPR/Cas9-based system for inducing site-specific DNA methylation. Biol. Open., 5, 866-874.
-
(2016)
Biol. Open.
, vol.5
, pp. 866-874
-
-
McDonald, J.I.1
Celik, H.2
Rois, L.E.3
Fishberger, G.4
Fowler, T.5
Rees, R.6
Kramer, A.7
Martens, A.8
Edwards, J.R.9
Challen, G.A.10
|