-
1
-
-
84892961071
-
-
ternational Agency for Research on Cancer, Lyon
-
J. Ferlay, I. Soerjomataram, M. Ervik, R. Dikshit, S. Eser, C. Mathers, M. Rebelo, D. M. Parkin, D. Forman, F. Bray, GLOBOCAN 2012 v1.0, Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11 (International Agency for Research on Cancer, Lyon, 2012).
-
(2012)
GLOBOCAN 2012 V1.0, Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11
-
-
Ferlay, J.1
Soerjomataram, I.2
Ervik, M.3
Dikshit, R.4
Eser, S.5
Mathers, C.6
Rebelo, M.7
Parkin, D.M.8
Forman, D.9
Bray, F.10
-
2
-
-
0034680102
-
Molecular portraits of human breast tumours
-
C. M. Perou, T. Sørlie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, C. A. Rees, J. R. Pollack, D. T. Ross, H. Johnsen, L. A. Akslen, Ø. Fluge, A. Pergamenschikov, C. Williams, S. X. Zhu, P. E. Lønning, A.-L. Børresen-Dale, P. O. Brown, D. Botstein, Molecular portraits of human breast tumours. Nature 406, 747–752 (2000).
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sørlie, T.2
Eisen, M.B.3
Van De Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
Fluge, Ø.11
Pergamenschikov, A.12
Williams, C.13
Zhu, S.X.14
Lønning, P.E.15
Børresen-Dale, A.-L.16
Brown, P.O.17
Botstein, D.18
-
3
-
-
84941624753
-
Primary breast cancer: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up
-
E. Senkus, S. Kyriakides, S. Ohno, F. Penault-Llorca, P. Poortmans, E. Rutgers, S. Zackrisson, F. Cardoso, Primary breast cancer: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up. Ann. Oncol. 26 (Suppl. 5), v8–v30 (2015).
-
(2015)
Ann. Oncol.
, vol.26
, pp. v8-v30
-
-
Senkus, E.1
Kyriakides, S.2
Ohno, S.3
Penault-Llorca, F.4
Poortmans, P.5
Rutgers, E.6
Zackrisson, S.7
Cardoso, F.8
-
4
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
The. Cancer Genome Atlas Network
-
The. Cancer Genome Atlas Network, Comprehensive molecular portraits of human breast tumours. Nature 490, 61–70 (2012).
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
5
-
-
81555216077
-
Gene expression profiling in breast cancer: Classification, prognostication, and prediction
-
J. S. Reis-Filho, L. Pusztai, Gene expression profiling in breast cancer: Classification, prognostication, and prediction. Lancet 378, 1812–1823 (2011).
-
(2011)
Lancet
, vol.378
, pp. 1812-1823
-
-
Reis-Filho, J.S.1
Pusztai, L.2
-
6
-
-
84942931171
-
th anniversary commentary: Divide and conquer—Breast cancer subtypes and response to therapy
-
th anniversary commentary: Divide and conquer—Breast cancer subtypes and response to therapy. Clin. Cancer Res. 21, 3575–3577 (2015).
-
(2015)
Clin. Cancer Res.
, vol.21
, pp. 3575-3577
-
-
Pusztai, L.1
Rouzier, R.2
Symmans, W.F.3
-
7
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
R. A. Gupta, N. Shah, K. C. Wang, J. Kim, H. M. Horlings, D. J. Wong, M.-C. Tsai, T. Hung, P. Argani, J. L. Rinn, Y. Wang, P. Brzoska, B. Kong, R. Li, R. B. West, M. J. van de Vijver, S. Sukumar, H. Y. Chang, Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464, 1071–1076 (2010).
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.-C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
Van De Vijver, M.J.16
Sukumar, S.17
Chang, H.Y.18
-
8
-
-
79956095811
-
LSINCT5 is over expressed in breast and ovarian cancer and affects cellular proliferation
-
J. M. Silva, N. J. Boczek, M. W. Berres, X. Ma, D. I. Smith, LSINCT5 is over expressed in breast and ovarian cancer and affects cellular proliferation. RNA Biol. 8, 496–505 (2011).
-
(2011)
RNA Biol.
, vol.8
, pp. 496-505
-
-
Silva, J.M.1
Boczek, N.J.2
Berres, M.W.3
Ma, X.4
Smith, D.I.5
-
9
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
T. Derrien, R. Johnson, G. Bussotti, A. Tanzer, S. Djebali, H. Tilgner, G. Guernec, D. Martin, A. Merkel, D. G. Knowles, J. Lagarde, L. Veeravalli, X. Ruan, Y. Ruan, T. Lassmann, P. Carninci, J. B. Brown, L. Lipovich, J. M. Gonzalez, M. Thomas, C. A. Davis, R. Shiekhattar, T. R. Gingeras, T. J. Hubbard, C. Notredame, J. Harrow, R. Guigó, The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775–1789 (2012).
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
Ruan, X.13
Ruan, Y.14
Lassmann, T.15
Carninci, P.16
Brown, J.B.17
Lipovich, L.18
Gonzalez, J.M.19
Thomas, M.20
Davis, C.A.21
Shiekhattar, R.22
Gingeras, T.R.23
Hubbard, T.J.24
Notredame, C.25
Harrow, J.26
Guigó, R.27
more..
-
10
-
-
84863495094
-
The hallmarks of cancer: A long non-coding RNA point of view
-
T. Gutschner, S. Diederichs, The hallmarks of cancer: A long non-coding RNA point of view. RNA Biol. 9, 703–719 (2012).
-
(2012)
RNA Biol.
, vol.9
, pp. 703-719
-
-
Gutschner, T.1
Diederichs, S.2
-
11
-
-
81355142141
-
Non-coding RNAs in human disease
-
M. Esteller, Non-coding RNAs in human disease. Nat. Rev. Genet. 12, 861–874 (2011).
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 861-874
-
-
Esteller, M.1
-
12
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
M. Huarte, M. Guttman, D. Feldser, M. Garber, M. J. Koziol, D. Kenzelmann-Broz, A. M. Khalil, O. Zuk, I. Amit, M. Rabani, L. D. Attardi, A. Regev, E. S. Lander, T. Jacks, J. L. Rinn, A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142, 409–419 (2010).
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
Attardi, L.D.11
Regev, A.12
Lander, E.S.13
Jacks, T.14
Rinn, J.L.15
-
13
-
-
84879684791
-
Long noncoding RNAs and the genetics of cancer
-
S. W. Cheetham, F. Gruhl, J. S. Mattick, M. E. Dinger, Long noncoding RNAs and the genetics of cancer. Br. J. Cancer 108, 2419–2425 (2013).
-
(2013)
Br. J. Cancer
, vol.108
, pp. 2419-2425
-
-
Cheetham, S.W.1
Gruhl, F.2
Mattick, J.S.3
Dinger, M.E.4
-
14
-
-
84928608163
-
Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes
-
X. Su, G. G. Malouf, Y. Chen, J. Zhang, H. Yao, V. Valero, J. N. Weinstein, J.-P. Spano, F. Meric-Bernstam, D. Khayat, F. J. Esteva, Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes. Oncotarget 5, 9864–9876 (2014).
-
(2014)
Oncotarget
, vol.5
, pp. 9864-9876
-
-
Su, X.1
Malouf, G.G.2
Chen, Y.3
Zhang, J.4
Yao, H.5
Valero, V.6
Weinstein, J.N.7
Spano, J.-P.8
Meric-Bernstam, F.9
Khayat, D.10
Esteva, F.J.11
-
15
-
-
84927610522
-
Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications
-
W. Zhao, J. Luo, S. Jiao, Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. Sci. Rep. 4, 6591 (2014).
-
(2014)
Sci. Rep.
, vol.4
, pp. 6591
-
-
Zhao, W.1
Luo, J.2
Jiao, S.3
-
16
-
-
79957882567
-
RNA-seq: Technical variability and sampling
-
L. M. McIntyre, K. K. Lopiano, A. M. Morse, V. Amin, A. L. Oberg, L. J. Young, S. V. Nuzhdin, RNA-seq: Technical variability and sampling. BMC Genomics 12, 293 (2011).
-
(2011)
BMC Genomics
, vol.12
, pp. 293
-
-
McIntyre, L.M.1
Lopiano, K.K.2
Morse, A.M.3
Amin, V.4
Oberg, A.L.5
Young, L.J.6
Nuzhdin, S.V.7
-
17
-
-
84862996504
-
A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease
-
N. Raghavachari, J. Barb, Y. Yang, P. Liu, K. Woodhouse, D. Levy, C. J. O’Donnell, P. J. Munson, G. J. Kato, A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease. BMC Med. Genomics 5, 28 (2012).
-
(2012)
BMC Med. Genomics
, vol.5
, pp. 28
-
-
Raghavachari, N.1
Barb, J.2
Yang, Y.3
Liu, P.4
Woodhouse, K.5
Levy, D.6
O’Donnell, C.J.7
Munson, P.J.8
Kato, G.J.9
-
18
-
-
80052521697
-
Synthetic spike-in standards for RNA-seq experiments
-
L. Jiang, F. Schlesinger, C. A. Davis, Y. Zhang, R. Li, M. Salit, T. R. Gingeras, B. Oliver, Synthetic spike-in standards for RNA-seq experiments. Genome Res. 21, 1543–1551 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1543-1551
-
-
Jiang, L.1
Schlesinger, F.2
Davis, C.A.3
Zhang, Y.4
Li, R.5
Salit, M.6
Gingeras, T.R.7
Oliver, B.8
-
19
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
R. Edgar, M. Domrachev, A. E. Lash, Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207–210 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
20
-
-
0038724494
-
Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
-
S. Monti, P. Tamayo, J. Mesirov, T. Golub, Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data. Mach. Learn. 52, 91–118 (2003).
-
(2003)
Mach. Learn.
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
21
-
-
77954182362
-
ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking
-
M. D. Wilkerson, D. N. Hayes, ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking. Bioinformatics 26, 1572–1573 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 1572-1573
-
-
Wilkerson, M.D.1
Hayes, D.N.2
-
22
-
-
84938923353
-
Inferring regulatory element landscapes and transcription factor networks from cancer methylomes
-
L. Yao, H. Shen, P. W. Laird, P. J. Farnham, B. P. Berman, Inferring regulatory element landscapes and transcription factor networks from cancer methylomes. Genome Biol. 16, 105 (2015).
-
(2015)
Genome Biol.
, vol.16
, pp. 105
-
-
Yao, L.1
Shen, H.2
Laird, P.W.3
Farnham, P.J.4
Berman, B.P.5
-
23
-
-
84947721184
-
Alternative pre-processing of RNA-sequencing data in The Cancer Genome Atlas leads to improved analysis results
-
M. Rahman, L. K. Jackson, W. E. Johnson, D. Y. Li, A. H. Bild, S. R. Piccolo, Alternative pre-processing of RNA-sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinformatics 31, 3666–3672 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 3666-3672
-
-
Rahman, M.1
Jackson, L.K.2
Johnson, W.E.3
Li, D.Y.4
Bild, A.H.5
Piccolo, S.R.6
-
24
-
-
84923284989
-
The oestrogen receptor a-regulated lncRNA NEAT1 is a critical modulator of prostate cancer
-
D. Chakravarty, A. Sboner, S. S. Nair, E. Giannopoulou, R. Li, S. Hennig, J. M. Mosquera, J. Pauwels, K. Park, M. Kossai, T. Y. MacDonald, J. Fontugne, N. Erho, I. A. Vergara, M. Ghadessi, E. Davicioni, R. B. Jenkins, N. Palanisamy, Z. Chen, S. Nakagawa, T. Hirose, N. H. Bander, H. Beltran, A. H. Fox, O. Elemento, M. A. Rubin, The oestrogen receptor a-regulated lncRNA NEAT1 is a critical modulator of prostate cancer. Nat. Commun. 5, 5383 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 5383
-
-
Chakravarty, D.1
Sboner, A.2
Nair, S.S.3
Giannopoulou, E.4
Li, R.5
Hennig, S.6
Mosquera, J.M.7
Pauwels, J.8
Park, K.9
Kossai, M.10
MacDonald, T.Y.11
Fontugne, J.12
Erho, N.13
Vergara, I.A.14
Ghadessi, M.15
Davicioni, E.16
Jenkins, R.B.17
Palanisamy, N.18
Chen, Z.19
Nakagawa, S.20
Hirose, T.21
Bander, N.H.22
Beltran, H.23
Fox, A.H.24
Elemento, O.25
Rubin, M.A.26
more..
-
25
-
-
84917679929
-
Keeping abreast with long non-coding RNAs in mammary gland development and breast cancer
-
H. Hansji, E. Y. Leung, B. C. Baguley, G. J. Finlay, M. E. Askarian-Amiri, Keeping abreast with long non-coding RNAs in mammary gland development and breast cancer. Front. Genet. 5, 379 (2014).
-
(2014)
Front. Genet.
, vol.5
, pp. 379
-
-
Hansji, H.1
Leung, E.Y.2
Baguley, B.C.3
Finlay, G.J.4
Askarian-Amiri, M.E.5
-
26
-
-
33847022042
-
BRCA1 dysfunction in sporadic basal-like breast cancer
-
N. C. Turner, J. S. Reis-Filho, A. M. Russell, R. J. Springall, K. Ryder, D. Steele, K. Savage, C. E. Gillett, F. C. Schmitt, A. Ashworth, A. N. Tutt, BRCA1 dysfunction in sporadic basal-like breast cancer. Oncogene 26, 2126–2132 (2007).
-
(2007)
Oncogene
, vol.26
, pp. 2126-2132
-
-
Turner, N.C.1
Reis-Filho, J.S.2
Russell, A.M.3
Springall, R.J.4
Ryder, K.5
Steele, D.6
Savage, K.7
Gillett, C.E.8
Schmitt, F.C.9
Ashworth, A.10
Tutt, A.N.11
-
27
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
J. L. Rinn, H. Y. Chang, Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 81, 145–166 (2012).
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
28
-
-
84904778085
-
Promoting E2F1-mediated apoptosis in oestrogen receptor-a-negative breast cancer cells
-
M. F. Montenegro, M. D. M. Collado-González, M. P. Fernández-Pérez, M. B. Hammouda, L. Tolordava, M. Gamkrelidze, J. N. Rodríguez-López, Promoting E2F1-mediated apoptosis in oestrogen receptor-a-negative breast cancer cells. BMC Cancer 14, 539 (2014).
-
(2014)
BMC Cancer
, vol.14
, pp. 539
-
-
Montenegro, M.F.1
Collado-González, M.D.M.2
Fernández-Pérez, M.P.3
Hammouda, M.B.4
Tolordava, L.5
Gamkrelidze, M.6
Rodríguez-López, J.N.7
-
29
-
-
84888344830
-
The immune system and inflammation in breast cancer
-
X. Jiang, D. J. Shapiro, The immune system and inflammation in breast cancer. Mol. Cell. Endocrinol. 382, 673–682 (2014).
-
(2014)
Mol. Cell. Endocrinol.
, vol.382
, pp. 673-682
-
-
Jiang, X.1
Shapiro, D.J.2
-
30
-
-
84899473980
-
Intrinsic subtypes from PAM50 gene expression assay in a population-based breast cancer cohort: Differences by age, race, and tumor characteristics
-
C. Sweeney, P. S. Bernard, R. E. Factor, M. L. Kwan, L. A. Habel, C. P. Quesenberry, K. Shakespear, E. K. Weltzien, I. J. Stijleman, C. A. Davis, M. T. W. Ebbert, A. Castillo, L. H. Kushi, B. J. Caan, Intrinsic subtypes from PAM50 gene expression assay in a population-based breast cancer cohort: Differences by age, race, and tumor characteristics. Cancer Epidemiol. Biomarkers Prev. 23, 714–724 (2014).
-
(2014)
Cancer Epidemiol. Biomarkers Prev.
, vol.23
, pp. 714-724
-
-
Sweeney, C.1
Bernard, P.S.2
Factor, R.E.3
Kwan, M.L.4
Habel, L.A.5
Quesenberry, C.P.6
Shakespear, K.7
Weltzien, E.K.8
Stijleman, I.J.9
Davis, C.A.10
Ebbert, M.T.W.11
Castillo, A.12
Kushi, L.H.13
Caan, B.J.14
-
31
-
-
21644462450
-
Downregulation of wild-type p53 protein by HER-2/neu mediated PI3K pathway activation in human breast cancer cells: Its effect on cell proliferation and implication for therapy
-
L. Zheng, J. Q. Ren, H. Li, Z. L. Kong, H. G. Zhu, Downregulation of wild-type p53 protein by HER-2/neu mediated PI3K pathway activation in human breast cancer cells: Its effect on cell proliferation and implication for therapy. Cell Res. 14, 497–506 (2004).
-
(2004)
Cell Res.
, vol.14
, pp. 497-506
-
-
Zheng, L.1
Ren, J.Q.2
Li, H.3
Kong, Z.L.4
Zhu, H.G.5
-
32
-
-
37349098725
-
Autocrine IL-6 signaling: A key event in tumorigenesis?
-
S. Grivennikov, M. Karin, Autocrine IL-6 signaling: A key event in tumorigenesis? Cancer Cell 13, 7–9 (2008).
-
(2008)
Cancer Cell
, vol.13
, pp. 7-9
-
-
Grivennikov, S.1
Karin, M.2
-
33
-
-
84880154515
-
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
-
Z. Du, T. Fei, R. G. W. Verhaak, Z. Su, Y. Zhang, M. Brown, Y. Chen, X. S. Liu, Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat. Struct. Mol. Biol. 20, 908–913 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 908-913
-
-
Du, Z.1
Fei, T.2
Verhaak, R.G.W.3
Su, Z.4
Zhang, Y.5
Brown, M.6
Chen, Y.7
Liu, X.S.8
-
34
-
-
84901012314
-
A short guide to long non-coding RNA gene nomenclature
-
M. W. Wright, A short guide to long non-coding RNA gene nomenclature. Hum. Genomics 8, 7 (2014).
-
(2014)
Hum. Genomics
, vol.8
, pp. 7
-
-
Wright, M.W.1
-
35
-
-
84904727229
-
Increased expression of long intergenic non-coding RNA LINC00152 in gastric cancer and its clinical significance
-
Q. Pang, J. Ge, Y. Shao, W. Sun, H. Song, T. Xia, B. Xiao, J. Guo, Increased expression of long intergenic non-coding RNA LINC00152 in gastric cancer and its clinical significance. Tumour Biol. 35, 5441–5447 (2014).
-
(2014)
Tumour Biol.
, vol.35
, pp. 5441-5447
-
-
Pang, Q.1
Ge, J.2
Shao, Y.3
Sun, W.4
Song, H.5
Xia, T.6
Xiao, B.7
Guo, J.8
-
36
-
-
84924063355
-
The landscape of long noncoding RNAs in the human transcriptome
-
M. K. Iyer, Y. S. Niknafs, R. Malik, U. Singhal, A. Sahu, Y. Hosono, T. R. Barrette, J. R. Prensner, J. R. Evans, S. Zhao, A. Poliakov, X. Cao, S. M. Dhanasekaran, Y.-M. Wu, D. R. Robinson, D. G. Beer, F. Y. Feng, H. K. Iyer, A. M. Chinnaiyan, The landscape of long noncoding RNAs in the human transcriptome. Nat. Genet. 47, 199–208 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 199-208
-
-
Iyer, M.K.1
Niknafs, Y.S.2
Malik, R.3
Singhal, U.4
Sahu, A.5
Hosono, Y.6
Barrette, T.R.7
Prensner, J.R.8
Evans, J.R.9
Zhao, S.10
Poliakov, A.11
Cao, X.12
Dhanasekaran, S.M.13
Wu, Y.-M.14
Robinson, D.R.15
Beer, D.G.16
Feng, F.Y.17
Iyer, H.K.18
Chinnaiyan, A.M.19
-
37
-
-
84888232130
-
Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
-
A. C. Marques, J. Hughes, B. Graham, M. S. Kowalczyk, D. R. Higgs, C. P. Ponting, Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome Biol. 14, R131 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R131
-
-
Marques, A.C.1
Hughes, J.2
Graham, B.3
Kowalczyk, M.S.4
Higgs, D.R.5
Ponting, C.P.6
-
38
-
-
84900453885
-
KIF14 promotes AKT phosphorylation and contributes to chemoresistance in triple-negative breast cancer
-
S. M. Singel, C. Cornelius, E. Zaganjor, K. Batten, V. R. Sarode, D. L. Buckley, Y. Peng, G. B. John, H. C. Li, N. Sadeghi, W. E. Wright, L. Lum, T. W. Corson, J. W. Shay, KIF14 promotes AKT phosphorylation and contributes to chemoresistance in triple-negative breast cancer. Neoplasia 16, 247–256.e2 (2014).
-
(2014)
Neoplasia
, vol.16
-
-
Singel, S.M.1
Cornelius, C.2
Zaganjor, E.3
Batten, K.4
Sarode, V.R.5
Buckley, D.L.6
Peng, Y.7
John, G.B.8
Li, H.C.9
Sadeghi, N.10
Wright, W.E.11
Lum, L.12
Corson, T.W.13
Shay, J.W.14
-
39
-
-
84864452759
-
Overexpression of GOLPH3 promotes proliferation and tumorigenicity in breast cancer via suppression of the FOXO1 transcription factor
-
Z. Zeng, H. Lin, X. Zhao, G. Liu, X. Wang, R. Xu, K. Chen, J. Li, L. Song, Overexpression of GOLPH3 promotes proliferation and tumorigenicity in breast cancer via suppression of the FOXO1 transcription factor. Clin. Cancer Res. 18, 4059–4069 (2012).
-
(2012)
Clin. Cancer Res.
, vol.18
, pp. 4059-4069
-
-
Zeng, Z.1
Lin, H.2
Zhao, X.3
Liu, G.4
Wang, X.5
Xu, R.6
Chen, K.7
Li, J.8
Song, L.9
-
40
-
-
84881622902
-
P0071/PKP4, a multifunctional protein coordinating cell adhesion with cytoskeletal organization
-
R. Keil, J. Schulz, M. Hatzfeld, p0071/PKP4, a multifunctional protein coordinating cell adhesion with cytoskeletal organization. Biol. Chem. 394, 1005–1017 (2013).
-
(2013)
Biol. Chem.
, vol.394
, pp. 1005-1017
-
-
Keil, R.1
Schulz, J.2
Hatzfeld, M.3
-
41
-
-
0038744392
-
Mechanics of cell spreading: Role of myosin II
-
T. Wakatsuki, R. B. Wysolmerski, E. L. Elson, Mechanics of cell spreading: Role of myosin II. J. Cell Sci. 116, 1617–1625 (2003).
-
(2003)
J. Cell Sci.
, vol.116
, pp. 1617-1625
-
-
Wakatsuki, T.1
Wysolmerski, R.B.2
Elson, E.L.3
-
42
-
-
3342895823
-
Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton
-
D. D. Sarbassov, S. M. Ali, D.-H. Kim, D. A. Guertin, R. R. Latek, H. Erdjument-Bromage, P. Tempst, D. M. Sabatini, Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton. Curr. Biol. 14, 1296–1302 (2004).
-
(2004)
Curr. Biol.
, vol.14
, pp. 1296-1302
-
-
Sarbassov, D.D.1
Ali, S.M.2
Kim, D.-H.3
Guertin, D.A.4
Latek, R.R.5
Erdjument-Bromage, H.6
Tempst, P.7
Sabatini, D.M.8
-
43
-
-
84946057420
-
Single-molecule sequencing reveals estrogen-regulated clinically relevant lncRNAs in breast cancer
-
P. Jonsson, C. Coarfa, F. Mesmar, T. Raz, K. Rajapakshe, J. F. Thompson, P. H. Gunaratne, C. Williams, Single-molecule sequencing reveals estrogen-regulated clinically relevant lncRNAs in breast cancer. Mol. Endocrinol. 29, 1634–1645 (2015).
-
(2015)
Mol. Endocrinol.
, vol.29
, pp. 1634-1645
-
-
Jonsson, P.1
Coarfa, C.2
Mesmar, F.3
Raz, T.4
Rajapakshe, K.5
Thompson, J.F.6
Gunaratne, P.H.7
Williams, C.8
-
44
-
-
84962278340
-
Luminal long non-coding RNAs regulated by estrogen receptor a in a ligand-independent manner show functional roles in breast cancer
-
V. Miano, G. Ferrero, S. Reineri, L. Caizzi, L. Annaratone, L. Ricci, S. Cutrupi, I. Castellano, F. Cordero, M. De Bortoli, Luminal long non-coding RNAs regulated by estrogen receptor a in a ligand-independent manner show functional roles in breast cancer. Oncotarget 7, 3201–3216 (2016).
-
(2016)
Oncotarget
, vol.7
, pp. 3201-3216
-
-
Miano, V.1
Ferrero, G.2
Reineri, S.3
Caizzi, L.4
Annaratone, L.5
Ricci, L.6
Cutrupi, S.7
Castellano, I.8
Cordero, F.9
De Bortoli, M.10
-
45
-
-
84905578200
-
PVT1 dependence in cancer with MYC copy-number increase
-
Y.-Y. Tseng, B. S. Moriarity, W. Gong, R. Akiyama, A. Tiwari, H. Kawakami, P. Ronning, B. Reuland, K. Guenther, T. C. Beadnell, J. Essig, G. M. Otto, M. G. O’Sullivan, D. A. Largaespada, K. L. Schwertfeger, Y. Marahrens, Y. Kawakami, A. Bagchi, PVT1 dependence in cancer with MYC copy-number increase. Nature 512, 82–86 (2014).
-
(2014)
Nature
, vol.512
, pp. 82-86
-
-
Tseng, Y.-Y.1
Moriarity, B.S.2
Gong, W.3
Akiyama, R.4
Tiwari, A.5
Kawakami, H.6
Ronning, P.7
Reuland, B.8
Guenther, K.9
Beadnell, T.C.10
Essig, J.11
Otto, G.M.12
O’Sullivan, M.G.13
Largaespada, D.A.14
Schwertfeger, K.L.15
Marahrens, Y.16
Kawakami, Y.17
Bagchi, A.18
-
46
-
-
84943169574
-
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
-
G. Doose, A. Haake, S. H. Bernhart, C. López, S. Duggimpudi, F. Wojciech, A. K. Bergmann, A. Borkhardt, B. Burkhardt, A. Claviez, L. Dimitrova, S. Haas, J. I. Hoell, M. Hummel, D. Karsch, W. Klapper, K. Kleo, H. Kretzmer, M. Kreuz, R. Küppers, C. Lawerenz, D. Lenze, M. Loeffler, L. Mantovani-Löffler, P. Möller, G. Ott, J. Richter, M. Rohde, P. Rosenstiel, A. Rosenwald, M. Schilhabel, M. Schneider, I. Scholz, S. Stilgenbauer, H. G. Stunnenberg, M. Szczepanowski, L. Trümper, M. A. Weniger; ICGC MMML-Seq Consortium, S. Hoffmann, R. Siebert, I. Iaccarino, MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells. Proc. Natl. Acad. Sci. U.S.A. 112, E5261–E5270 (2015).
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E5261-E5270
-
-
Doose, G.1
Haake, A.2
Bernhart, S.H.3
López, C.4
Duggimpudi, S.5
Wojciech, F.6
Bergmann, A.K.7
Borkhardt, A.8
Burkhardt, B.9
Claviez, A.10
Dimitrova, L.11
Haas, S.12
Hoell, J.I.13
Hummel, M.14
Karsch, D.15
Klapper, W.16
Kleo, K.17
Kretzmer, H.18
Kreuz, M.19
Küppers, R.20
Lawerenz, C.21
Lenze, D.22
Loeffler, M.23
Mantovani-Löffler, L.24
Möller, P.25
Ott, G.26
Richter, J.27
Rohde, M.28
Rosenstiel, P.29
Rosenwald, A.30
Schilhabel, M.31
Schneider, M.32
Scholz, I.33
Stilgenbauer, S.34
Stunnenberg, H.G.35
Szczepanowski, M.36
Trümper, L.37
Weniger, M.A.38
Hoffmann, S.39
Siebert, R.40
Iaccarino, I.41
more..
-
47
-
-
84901986884
-
Targeting the PI3K/AKT/mTOR pathway in estrogen receptor-positive breast cancer
-
E. M. Ciruelos Gil, Targeting the PI3K/AKT/mTOR pathway in estrogen receptor-positive breast cancer. Cancer Treat. Rev. 40, 862–871 (2014).
-
(2014)
Cancer Treat. Rev.
, vol.40
, pp. 862-871
-
-
Ciruelos Gil, E.M.1
-
48
-
-
77949753453
-
Estrogen receptor regulates E2F1 expression to mediate tamoxifen resistance
-
M. C. Louie, A. McClellan, C. Siewit, L. Kawabata, Estrogen receptor regulates E2F1 expression to mediate tamoxifen resistance. Mol. Cancer Res. 8, 343–352 (2010).
-
(2010)
Mol. Cancer Res.
, vol.8
, pp. 343-352
-
-
Louie, M.C.1
McClellan, A.2
Siewit, C.3
Kawabata, L.4
-
49
-
-
34548594103
-
Low E2F1 transcript levels are a strong determinant of favorable breast cancer outcome
-
V. Vuaroqueaux, P. Urban, M. Labuhn, M. Delorenzi, P. Wirapati, C. C. Benz, R. Flury, H. Dieterich, F. Spyratos, U. Eppenberger, S. Eppenberger-Castori, Low E2F1 transcript levels are a strong determinant of favorable breast cancer outcome. Breast Cancer Res. 9, R33 (2007).
-
(2007)
Breast Cancer Res.
, vol.9
, pp. R33
-
-
Vuaroqueaux, V.1
Urban, P.2
Labuhn, M.3
Delorenzi, M.4
Wirapati, P.5
Benz, C.C.6
Flury, R.7
Dieterich, H.8
Spyratos, F.9
Eppenberger, U.10
Eppenberger-Castori, S.11
-
50
-
-
33750361956
-
Estrogenic regulation of host immunity against an estrogen receptor–negative human breast cancer
-
E. M. Curran, B. M. Judy, N. A. Duru, H.-Q. Wang, L. A. Vergara, D. B. Lubahn, D. M. Estes, Estrogenic regulation of host immunity against an estrogen receptor–negative human breast cancer. Clin. Cancer Res. 12, 5641–5647 (2006).
-
(2006)
Clin. Cancer Res.
, vol.12
, pp. 5641-5647
-
-
Curran, E.M.1
Judy, B.M.2
Duru, N.A.3
Wang, H.-Q.4
Vergara, L.A.5
Lubahn, D.B.6
Estes, D.M.7
-
51
-
-
84900319543
-
Activation of ERa signaling differentially modulates IFN-g induced HLA-class II expression in breast cancer cells
-
A. A. Mostafa, D. Codner, K. Hirasawa, Y. Komatsu, M. N. Young, V. Steimle, S. Drover, Activation of ERa signaling differentially modulates IFN-g induced HLA-class II expression in breast cancer cells. PLOS One 9, e87377 (2014).
-
(2014)
PLOS One
, vol.9
-
-
Mostafa, A.A.1
Codner, D.2
Hirasawa, K.3
Komatsu, Y.4
Young, M.N.5
Steimle, V.6
Drover, S.7
-
52
-
-
69249221254
-
Interleukin-6 induces an epithelial–mesenchymal transition phenotype in human breast cancer cells
-
N. J. Sullivan, A. K. Sasser, A. E. Axel, F. Vesuna, V. Raman, N. Ramirez, T. M. Oberyszyn, B. M. Hall, Interleukin-6 induces an epithelial–mesenchymal transition phenotype in human breast cancer cells. Oncogene 28, 2940–2947 (2009).
-
(2009)
Oncogene
, vol.28
, pp. 2940-2947
-
-
Sullivan, N.J.1
Sasser, A.K.2
Axel, A.E.3
Vesuna, F.4
Raman, V.5
Ramirez, N.6
Oberyszyn, T.M.7
Hall, B.M.8
-
53
-
-
36849017497
-
IL-6 involvement in epithelial cancers
-
Z. T. Schafer, J. S. Brugge, IL-6 involvement in epithelial cancers. J. Clin. Invest. 117, 3660–3663 (2007).
-
(2007)
J. Clin. Invest.
, vol.117
, pp. 3660-3663
-
-
Schafer, Z.T.1
Brugge, J.S.2
-
54
-
-
55849130676
-
A novel H19 antisense RNA overexpressed in breast cancer contributes to paternal IGF2 expression
-
N. Berteaux, N. Aptel, G. Cathala, C. Genton, J. Coll, A. Daccache, N. Spruyt, H. Hondermarck, T. Dugimont, J.-J. Curgy, T. Forné, E. Adriaenssens, A novel H19 antisense RNA overexpressed in breast cancer contributes to paternal IGF2 expression. Mol. Cell. Biol. 28, 6731–6745 (2008).
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 6731-6745
-
-
Berteaux, N.1
Aptel, N.2
Cathala, G.3
Genton, C.4
Coll, J.5
Daccache, A.6
Spruyt, N.7
Hondermarck, H.8
Dugimont, T.9
Curgy, J.-J.10
Forné, T.11
Adriaenssens, E.12
-
55
-
-
18544405060
-
H19 overexpression in breast adenocarcinoma stromal cells is associated with tumor values and steroid receptor status but independent of p53 and Ki-67 expression
-
E. Adriaenssens, L. Dumont, S. Lottin, D. Bolle, A. Leprêtre, A. Delobelle, F. Bouali, T. Dugimont, J. Coll, J.-J. Curgy, H19 overexpression in breast adenocarcinoma stromal cells is associated with tumor values and steroid receptor status but independent of p53 and Ki-67 expression. Am. J. Pathol. 153, 1597–1607 (1998).
-
(1998)
Am. J. Pathol.
, vol.153
, pp. 1597-1607
-
-
Adriaenssens, E.1
Dumont, L.2
Lottin, S.3
Bolle, D.4
Leprêtre, A.5
Delobelle, A.6
Bouali, F.7
Dugimont, T.8
Coll, J.9
Curgy, J.-J.10
-
56
-
-
84874789694
-
Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma
-
L. Zhang, F. Yang, J.-H. Yuan, S.-X. Yuan, W.-P. Zhou, X.-S. Huo, D. Xu, H.-S. Bi, F. Wang, S.-H. Sun, Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma. Carcinogenesis 34, 577–586 (2013).
-
(2013)
Carcinogenesis
, vol.34
, pp. 577-586
-
-
Zhang, L.1
Yang, F.2
Yuan, J.-H.3
Yuan, S.-X.4
Zhou, W.-P.5
Huo, X.-S.6
Xu, D.7
Bi, H.-S.8
Wang, F.9
Sun, S.-H.10
-
57
-
-
77953794087
-
Transforming growth factor b promotes complexes between Smad proteins and the CCCTC-binding factor on the H19 imprinting control region chromatin
-
R. Bergström, K. Savary, A. Morén, S. Guibert, C.-H. Heldin, R. Ohlsson, A. Moustakas, Transforming growth factor b promotes complexes between Smad proteins and the CCCTC-binding factor on the H19 imprinting control region chromatin. J. Biol. Chem. 285, 19727–19737 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 19727-19737
-
-
Bergström, R.1
Savary, K.2
Morén, A.3
Guibert, S.4
Heldin, C.-H.5
Ohlsson, R.6
Moustakas, A.7
-
58
-
-
84899543782
-
Oncofetal H19 RNA promotes tumor metastasis
-
I. J. Matouk, E. Raveh, R. Abu-lail, S. Mezan, M. Gilon, E. Gershtain, T. Birman, J. Gallula, T. Schneider, M. Barkali, C. Richler, Y. Fellig, V. Sorin, A. Hubert, A. Hochberg, A. Czerniak, Oncofetal H19 RNA promotes tumor metastasis. Biochim. Biophys. Acta 1843, 1414–1426 (2014).
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 1414-1426
-
-
Matouk, I.J.1
Raveh, E.2
Abu-Lail, R.3
Mezan, S.4
Gilon, M.5
Gershtain, E.6
Birman, T.7
Gallula, J.8
Schneider, T.9
Barkali, M.10
Richler, C.11
Fellig, Y.12
Sorin, V.13
Hubert, A.14
Hochberg, A.15
Czerniak, A.16
-
59
-
-
84943645161
-
Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer
-
C. Chen, Z. Li, Y. Yang, T. Xiang, W. Song, S. Liu, Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer. Cancer Biol. Ther. 16, 856–865 (2015).
-
(2015)
Cancer Biol. Ther.
, vol.16
, pp. 856-865
-
-
Chen, C.1
Li, Z.2
Yang, Y.3
Xiang, T.4
Song, W.5
Liu, S.6
-
60
-
-
84899984643
-
Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer
-
X.-H. Liu, M. Sun, F.-Q. Nie, Y.-B. Ge, E.-B. Zhang, D.-D. Yin, R. Kong, R. Xia, K.-H. Lu, J.-H. Li, W. De, K.-M. Wang, Z.-X. Wang, Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer. Mol. Cancer 13, 92 (2014).
-
(2014)
Mol. Cancer
, vol.13
, pp. 92
-
-
Liu, X.-H.1
Sun, M.2
Nie, F.-Q.3
Ge, Y.-B.4
Zhang, E.-B.5
Yin, D.-D.6
Kong, R.7
Xia, R.8
Lu, K.-H.9
Li, J.-H.10
De, W.11
Wang, K.-M.12
Wang, Z.-X.13
-
61
-
-
84904439740
-
Osteopontin enhances the expression of HOTAIR in cancer cells via IRF1
-
G. Yang, S. Zhang, F. Gao, Z. Liu, M. Lu, S. Peng, T. Zhang, F. Zhang, Osteopontin enhances the expression of HOTAIR in cancer cells via IRF1. Biochim. Biophys. Acta 1839, 837–848 (2014).
-
(2014)
Biochim. Biophys. Acta
, vol.1839
, pp. 837-848
-
-
Yang, G.1
Zhang, S.2
Gao, F.3
Liu, Z.4
Lu, M.5
Peng, S.6
Zhang, T.7
Zhang, F.8
-
62
-
-
84964802298
-
Association of HOTAIR expression with PI3K/Akt pathway activation in adenocarcinoma of esophagogastric junction
-
Z. Hui, M. Xianglin, Association of HOTAIR expression with PI3K/Akt pathway activation in adenocarcinoma of esophagogastric junction. Open Med. 11, 36–40 (2016).
-
(2016)
Open Med.
, vol.11
, pp. 36-40
-
-
Hui, Z.1
Xianglin, M.2
-
63
-
-
84946063024
-
Linc00152 promotes proliferation in gastric cancer through the EGFR-dependent pathway
-
J. Zhou, X. Zhi, L. Wang, W. Wang, Z. Li, J. Tang, J. Wang, Q. Zhang, Z. Xu, Linc00152 promotes proliferation in gastric cancer through the EGFR-dependent pathway. J. Exp. Clin. Cancer Res. 34, 135 (2015).
-
(2015)
J. Exp. Clin. Cancer Res.
, vol.34
, pp. 135
-
-
Zhou, J.1
Zhi, X.2
Wang, L.3
Wang, W.4
Li, Z.5
Tang, J.6
Wang, J.7
Zhang, Q.8
Xu, Z.9
-
64
-
-
84952311032
-
LINC00152 promotes proliferation in hepatocellular carcinoma by targeting EpCAM via the mTOR signaling pathway
-
J. Ji, J. Tang, L. Deng, Y. Xie, R. Jiang, G. Li, B. Sun, LINC00152 promotes proliferation in hepatocellular carcinoma by targeting EpCAM via the mTOR signaling pathway. Oncotarget 6, 42813–42824 (2015).
-
(2015)
Oncotarget
, vol.6
, pp. 42813-42824
-
-
Ji, J.1
Tang, J.2
Deng, L.3
Xie, Y.4
Jiang, R.5
Li, G.6
Sun, B.7
-
65
-
-
67649500009
-
GOLPH3 modulates mTOR signalling and rapamycin sensitivity in cancer
-
K. L. Scott, O. Kabbarah, M.-C. Liang, E. Ivanova, V. Anagnostou, J. Wu, S. Dhakal, M. Wu, S. Chen, T. Feinberg, J. Huang, A. Saci, H. R. Widlund, D. E. Fisher, Y. Xiao, D. L. Rimm, A. Protopopov, K.-K. Wong, L. Chin, GOLPH3 modulates mTOR signalling and rapamycin sensitivity in cancer. Nature 459, 1085–1090 (2009).
-
(2009)
Nature
, vol.459
, pp. 1085-1090
-
-
Scott, K.L.1
Kabbarah, O.2
Liang, M.-C.3
Ivanova, E.4
Anagnostou, V.5
Wu, J.6
Dhakal, S.7
Wu, M.8
Chen, S.9
Feinberg, T.10
Huang, J.11
Saci, A.12
Widlund, H.R.13
Fisher, D.E.14
Xiao, Y.15
Rimm, D.L.16
Protopopov, A.17
Wong, K.-K.18
Chin, L.19
-
66
-
-
84924386080
-
Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers
-
Y. Gökmen-Polar, I. T. Vladislav, Y. Neelamraju, S. C. Janga, S. Badve, Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers. Sci. Rep. 5, 8765 (2015).
-
(2015)
Sci. Rep.
, vol.5
, pp. 8765
-
-
Gökmen-Polar, Y.1
Vladislav, I.T.2
Neelamraju, Y.3
Janga, S.C.4
Badve, S.5
-
67
-
-
84946905311
-
A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients
-
J. Sun, X. Chen, Z. Wang, M. Guo, H. Shi, X. Wang, L. Cheng, M. Zhou, A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients. Sci. Rep. 5, 16553 (2015).
-
(2015)
Sci. Rep.
, vol.5
, pp. 16553
-
-
Sun, J.1
Chen, X.2
Wang, Z.3
Guo, M.4
Shi, H.5
Wang, X.6
Cheng, L.7
Zhou, M.8
-
68
-
-
84928621724
-
Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers
-
K. P. Sørensen, M. Thomassen, Q. Tan, M. Bak, S. Cold, M. Burton, M. J. Larsen, T. A. Kruse, Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers. Breast Cancer Res. 17, 55 (2015).
-
(2015)
Breast Cancer Res.
, vol.17
, pp. 55
-
-
Sørensen, K.P.1
Thomassen, M.2
Tan, Q.3
Bak, M.4
Cold, S.5
Burton, M.6
Larsen, M.J.7
Kruse, T.A.8
-
69
-
-
84875530540
-
LNCipedia: A database for annotated human lncRNA transcript sequences and structures
-
P.-J. Volders, K. Helsens, X. Wang, B. Menten, L. Martens, K. Gevaert, J. Vandesompele, P. Mestdagh, LNCipedia: A database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res. 41, D246–D251 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D246-D251
-
-
Volders, P.-J.1
Helsens, K.2
Wang, X.3
Menten, B.4
Martens, L.5
Gevaert, K.6
Vandesompele, J.7
Mestdagh, P.8
-
70
-
-
84893400715
-
Microarray Inspector: Tissue cross contamination detection tool for microarray data
-
P. Stępniak, M. Maycock, K. Wojdan, M. Markowska, S. Perun, A. Srivastava, L. S. Wyrwicz, K. Świrski, Microarray Inspector: Tissue cross contamination detection tool for microarray data. Acta Biochim. Pol. 60, 647–655 (2013).
-
(2013)
Acta Biochim. Pol.
, vol.60
, pp. 647-655
-
-
Stępniak, P.1
Maycock, M.2
Wojdan, K.3
Markowska, M.4
Perun, S.5
Srivastava, A.6
Wyrwicz, L.S.7
Świrski, K.8
-
71
-
-
62449131093
-
Supervised risk predictor of breast cancer based on intrinsic subtypes
-
J. S. Parker, M. Mullins, M. C. U. Cheang, S. Leung, D. Voduc, T. Vickery, S. Davies, C. Fauron, X. He, Z. Hu, J. F. Quackenbush, I. J. Stijleman, J. Palazzo, J. S. Marron, A. B. Nobel, E. Mardis, T. O. Nielsen, M. J. Ellis, C. M. Perou, P. S. Bernard, Supervised risk predictor of breast cancer based on intrinsic subtypes. J. Clin. Oncol. 27, 1160–1167 (2009).
-
(2009)
J. Clin. Oncol.
, vol.27
, pp. 1160-1167
-
-
Parker, J.S.1
Mullins, M.2
Cheang, M.C.U.3
Leung, S.4
Voduc, D.5
Vickery, T.6
Davies, S.7
Fauron, C.8
He, X.9
Hu, Z.10
Quackenbush, J.F.11
Stijleman, I.J.12
Palazzo, J.13
Marron, J.S.14
Nobel, A.B.15
Mardis, E.16
Nielsen, T.O.17
Ellis, M.J.18
Perou, C.M.19
Bernard, P.S.20
more..
-
72
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
C. W. Law, Y. Chen, W. Shi, G. K. Smyth, voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15, R29 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
73
-
-
84926507971
-
Limma powers differential expression analyses for RNA-sequencing and microarray studies
-
M. E. Ritchie, B. Phipson, D. Wu, Y. Hu, C. W. Law, W. Shi, G. K. Smyth, limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
Smyth, G.K.7
-
74
-
-
80055090025
-
Most random gene expression signatures are significantly associated with breast cancer outcome
-
D. Venet, J. E. Dumont, V. Detours, Most random gene expression signatures are significantly associated with breast cancer outcome. PLOS Comput. Biol. 7, e1002240 (2011).
-
(2011)
PLOS Comput. Biol.
, vol.7
, pp. e1002240
-
-
Venet, D.1
Dumont, J.E.2
Detours, V.3
-
75
-
-
46249088370
-
Lumi: A pipeline for processing Illumina microarray
-
P. Du, W. A. Kibbe, S. M. Lin, lumi: A pipeline for processing Illumina microarray. Bioinformatics 24, 1547–1548 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
|