-
1
-
-
84943200502
-
The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-Aligned active and inactive nuclear compartments
-
Cremer, T. et al. The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-Aligned active and inactive nuclear compartments. FEBS Lett. 589 (20 Pt A), 2931-2943 (2015).
-
(2015)
FEBS Lett
, vol.589
, pp. 2931-2943
-
-
Cremer, T.1
-
2
-
-
84875190221
-
Genome architecture: Domain organization of interphase chromosomes
-
Bickmore, W. A. & van Steensel, B. Genome architecture: domain organization of interphase chromosomes. Cell 152, 1270-1284 (2013).
-
(2013)
Cell
, vol.152
, pp. 1270-1284
-
-
Bickmore, W.A.1
Van Steensel, B.2
-
3
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
4
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora, E. P. et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485, 381-385 (2012).
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
-
5
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J. R. et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380 (2012).
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
-
6
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton, T. et al. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148, 458-472 (2012).
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
-
7
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
Rao, S. S. et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159, 1665-1680 (2014).
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
-
8
-
-
84892934183
-
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
-
Zuin, J. et al. Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells. Proc. Natl Acad. Sci. USA 111, 996-1001 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 996-1001
-
-
Zuin, J.1
-
9
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
Phillips-Cremins, J. E. et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 153, 1281-1295 (2013).
-
(2013)
Cell
, vol.153
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
-
10
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and populationbased modeling
-
Kalhor, R., Tjong, H., Jayathilaka, N., Alber, F. & Chen, L. Genome architectures revealed by tethered chromosome conformation capture and populationbased modeling. Nat. Biotechnol. 30, 90-98 (2011).
-
(2011)
Nat. Biotechnol
, vol.30
, pp. 90-98
-
-
Kalhor, R.1
Tjong, H.2
Jayathilaka, N.3
Alber, F.4
Chen, L.5
-
11
-
-
84962226487
-
Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
-
Tjong, H. et al. Population-based 3D genome structure analysis reveals driving forces in spatial genome organization. Proc. Natl Acad. Sci. USA 113, E1663-E1672 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. E1663-E1672
-
-
Tjong, H.1
-
12
-
-
84888018217
-
Organization of the mitotic chromosome
-
Naumova, N. et al. Organization of the mitotic chromosome. Science 342, 948-953 (2013).
-
(2013)
Science
, vol.342
, pp. 948-953
-
-
Naumova, N.1
-
13
-
-
84957436525
-
Nuclear architecture organized by Rif1 underpins the replicationtiming program
-
Foti, R. et al. Nuclear architecture organized by Rif1 underpins the replicationtiming program. Mol. Cell 61, 260-273 (2016).
-
(2016)
Mol. Cell
, vol.61
, pp. 260-273
-
-
Foti, R.1
-
14
-
-
84980417141
-
Spatial organization of chromatin domains and compartments in single chromosomes
-
Wang, S. et al. Spatial organization of chromatin domains and compartments in single chromosomes. Science 353, 598-602 (2016).
-
(2016)
Science
, vol.353
, pp. 598-602
-
-
Wang, S.1
-
15
-
-
84887271825
-
Human genome replication proceeds through four chromatin states
-
Julienne, H., Zoufir, A., Audit, B. & Arneodo, A. Human genome replication proceeds through four chromatin states. PLOS Comput. Biol. 9, e1003233 (2013).
-
(2013)
PLOS Comput. Biol
, vol.9
, pp. e1003233
-
-
Julienne, H.1
Zoufir, A.2
Audit, B.3
Arneodo, A.4
-
16
-
-
77952576224
-
Molecular maps of the reorganization of genomenuclear lamina interactions during differentiation
-
Peric-Hupkes, D. et al. Molecular maps of the reorganization of genomenuclear lamina interactions during differentiation. Mol. Cell 38, 603-613 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
-
17
-
-
84873375779
-
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
-
Meuleman, W. et al. Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence. Genome Res. 23, 270-280 (2013).
-
(2013)
Genome Res
, vol.23
, pp. 270-280
-
-
Meuleman, W.1
-
18
-
-
78149295090
-
High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli
-
van Koningsbruggen, S. et al. High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli. Mol. Biol. Cell 21, 3735-3748 (2010).
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 3735-3748
-
-
Van Koningsbruggen, S.1
-
19
-
-
84875703872
-
Single-cell dynamics of genome-nuclear lamina interactions
-
Kind, J. et al. Single-cell dynamics of genome-nuclear lamina interactions. Cell 153, 178-192 (2013).
-
(2013)
Cell
, vol.153
, pp. 178-192
-
-
Kind, J.1
-
20
-
-
84901837819
-
Defining an essential transcription factor program for naïve pluripotency
-
Dunn, S. J., Martello, G., Yordanov, B., Emmott, S. & Smith, A. G. Defining an essential transcription factor program for naïve pluripotency. Science 344, 1156-1160 (2014).
-
(2014)
Science
, vol.344
, pp. 1156-1160
-
-
Dunn, S.J.1
Martello, G.2
Yordanov, B.3
Emmott, S.4
Smith, A.G.5
-
21
-
-
84918539650
-
Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells
-
Therizols, P. et al. Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells. Science 346, 1238-1242 (2014).
-
(2014)
Science
, vol.346
, pp. 1238-1242
-
-
Therizols, P.1
-
22
-
-
84922693139
-
Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. Elegans embryogenesis
-
Kröger, A. V. et al. Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis. Dev. Biol. 398, 153-162 (2015).
-
(2015)
Dev. Biol
, vol.398
, pp. 153-162
-
-
Kröger, A.V.1
-
23
-
-
84890566970
-
Cohesin-mediated interactions organize chromosomal domain architecture
-
Sofueva, S. et al. Cohesin-mediated interactions organize chromosomal domain architecture. EMBO J. 32, 3119-3129 (2013).
-
(2013)
EMBO J
, vol.32
, pp. 3119-3129
-
-
Sofueva, S.1
-
24
-
-
84900297485
-
Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
-
Giorgetti, L. et al. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription. Cell 157, 950-963 (2014).
-
(2014)
Cell
, vol.157
, pp. 950-963
-
-
Giorgetti, L.1
-
25
-
-
84875134984
-
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
-
Naughton, C. et al. Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures. Nat. Struct. Mol. Biol. 20, 387-395 (2013).
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 387-395
-
-
Naughton, C.1
-
26
-
-
84875185055
-
Transcription-dependent dynamic supercoiling is a short-range genomic force
-
Kouzine, F. et al. Transcription-dependent dynamic supercoiling is a short-range genomic force. Nat. Struct. Mol. Biol. 20, 396-403 (2013).
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 396-403
-
-
Kouzine, F.1
-
27
-
-
84939246295
-
CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function
-
Guo, Y. et al. CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function. Cell 162, 900-910 (2015).
-
(2015)
Cell
, vol.162
, pp. 900-910
-
-
Guo, Y.1
-
28
-
-
84948403758
-
Chromatin extrusion explains key features of loop and domain formation in wild-Type and engineered genomes
-
Sanborn, A. L. et al. Chromatin extrusion explains key features of loop and domain formation in wild-Type and engineered genomes. Proc. Natl Acad. Sci. USA 112, E6456-E6465 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. E6456-E6465
-
-
Sanborn, A.L.1
-
29
-
-
84971324235
-
Formation of chromosomal domains by loop extrusion
-
Fudenberg, G. et al. Formation of chromosomal domains by loop extrusion. Cell Reports 15, 2038-2049 (2016).
-
(2016)
Cell Reports
, vol.15
, pp. 2038-2049
-
-
Fudenberg, G.1
-
30
-
-
3242880374
-
Cohesin relocation from sites of chromosomal loading to places of convergent transcription
-
Lengronne, A. et al. Cohesin relocation from sites of chromosomal loading to places of convergent transcription. Nature 430, 573-578 (2004).
-
(2004)
Nature
, vol.430
, pp. 573-578
-
-
Lengronne, A.1
-
31
-
-
84946208311
-
Stable chromosome condensation revealed by chromosome conformation capture
-
Eagen, K. P., Hartl, T. A. & Kornberg, R. D. Stable chromosome condensation revealed by chromosome conformation capture. Cell 163, 934-946 (2015).
-
(2015)
Cell
, vol.163
, pp. 934-946
-
-
Eagen, K.P.1
Hartl, T.A.2
Kornberg, R.D.3
-
32
-
-
84904963561
-
Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster
-
Zhimulev, I. F. et al. Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster. PLoS One 9, e101631 (2014).
-
(2014)
PLoS One
, vol.9
, pp. e101631
-
-
Zhimulev, I.F.1
-
33
-
-
84937960975
-
Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation
-
Minajigi, A. et al. Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation. Science 349, aab2276 (2015).
-
(2015)
Science
, vol.349
, pp. 2276
-
-
Minajigi, A.1
-
34
-
-
84982763241
-
Structural organization of the inactive X chromosome in the mouse
-
Giorgetti, L. et al. Structural organization of the inactive X chromosome in the mouse. Nature 535, 575-579 (2016).
-
(2016)
Nature
, vol.535
, pp. 575-579
-
-
Giorgetti, L.1
-
35
-
-
84884134904
-
The pluripotent genome in three dimensions is shaped around pluripotency factors
-
de Wit, E. et al. The pluripotent genome in three dimensions is shaped around pluripotency factors. Nature 501, 227-231 (2013).
-
(2013)
Nature
, vol.501
, pp. 227-231
-
-
De Wit, E.1
-
36
-
-
84887835943
-
Klf4 organizes long-range chromosomal interactions with the Oct4 locus in reprogramming and pluripotency
-
Wei, Z. et al. Klf4 organizes long-range chromosomal interactions with the Oct4 locus in reprogramming and pluripotency. Cell Stem Cell 13, 36-47 (2013).
-
(2013)
Cell Stem Cell
, vol.13
, pp. 36-47
-
-
Wei, Z.1
-
37
-
-
85027929606
-
Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization
-
Denholtz, M. et al. Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization. Cell Stem Cell 13, 602-616 (2013).
-
(2013)
Cell Stem Cell
, vol.13
, pp. 602-616
-
-
Denholtz, M.1
-
38
-
-
84860647928
-
NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment
-
Reynolds, N. et al. NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment. Cell Stem Cell 10, 583-594 (2012).
-
(2012)
Cell Stem Cell
, vol.10
, pp. 583-594
-
-
Reynolds, N.1
-
39
-
-
84966687345
-
The nucleosome remodeling and deacetylase complex NuRD is built from preformed catalytically active sub-modules
-
Zhang, W. et al. The nucleosome remodeling and deacetylase complex NuRD is built from preformed catalytically active sub-modules. J. Mol. Biol. 428, 2931-2942 (2016).
-
(2016)
J. Mol. Biol
, vol.428
, pp. 2931-2942
-
-
Zhang, W.1
-
40
-
-
84862778059
-
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
-
Zhang, Y. et al. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell 148, 908-921 (2012).
-
(2012)
Cell
, vol.148
, pp. 908-921
-
-
Zhang, Y.1
|