메뉴 건너뛰기




Volumn 398, Issue 2, 2015, Pages 153-162

Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis

Author keywords

C. elegans; Chromatin regulators; Embryogenesis; Epigenetics; Gene expression; High dimensional phenotyping; Image analysis; Single cell analysis

Indexed keywords

CIR 1 PROTEIN; EGL 27 PROTEIN; F55A3.3 PROTEIN; HDA 1 PROTEIN; LET 526 PROTEIN; LIN 40 PROTEIN; LIN 53 PROTEIN; RBA 1 PROTEIN; REGULATOR PROTEIN; RNA POLYMERASE II; SET 16 PROTEIN; SWSN 7 PROTEIN; UNCLASSIFIED DRUG; CAENORHABDITIS ELEGANS PROTEIN; CHROMATIN;

EID: 84922693139     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2014.10.014     Document Type: Article
Times cited : (22)

References (52)
  • 2
    • 84878267796 scopus 로고    scopus 로고
    • Polycomb complexes in stem cells and embryonic development
    • Aloia L., Di Stefano B., Di Croce L. Polycomb complexes in stem cells and embryonic development. Development 2013, 140:2525-2534.
    • (2013) Development , vol.140 , pp. 2525-2534
    • Aloia, L.1    Di Stefano, B.2    Di Croce, L.3
  • 3
    • 80052483155 scopus 로고    scopus 로고
    • Mounting Caenorhabditis elegans embryos for live imaging of embryogenesis
    • Bao Z., Murray J.I. Mounting Caenorhabditis elegans embryos for live imaging of embryogenesis. Cold Spring Harb. Protoc. 2011, 1089-1094.
    • (2011) Cold Spring Harb. Protoc. , pp. 1089-1094
    • Bao, Z.1    Murray, J.I.2
  • 5
    • 43449083177 scopus 로고    scopus 로고
    • Control of cell cycle timing during C. elegans embryogenesis
    • Bao Z., Zhao Z., Boyle T.J., Murray J.I., Waterston R.H. Control of cell cycle timing during C. elegans embryogenesis. Dev. Biol. 2008, 318:65-72.
    • (2008) Dev. Biol. , vol.318 , pp. 65-72
    • Bao, Z.1    Zhao, Z.2    Boyle, T.J.3    Murray, J.I.4    Waterston, R.H.5
  • 6
    • 80053094968 scopus 로고    scopus 로고
    • Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development
    • Boeck M.E., Boyle T., Bao Z., Murray J., Mericle B., Waterston R. Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development. Dev. Biol. 2011, 358:345-355.
    • (2011) Dev. Biol. , vol.358 , pp. 345-355
    • Boeck, M.E.1    Boyle, T.2    Bao, Z.3    Murray, J.4    Mericle, B.5    Waterston, R.6
  • 7
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. The genetics of Caenorhabditis elegans. Genetics 1974, 77:71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 8
    • 0032819137 scopus 로고    scopus 로고
    • Egl-27 generates anteroposterior patterns of cell fusion in C. elegans by regulating Hox gene expression and Hox protein function
    • Ch'ng Q., Kenyon C. egl-27 generates anteroposterior patterns of cell fusion in C. elegans by regulating Hox gene expression and Hox protein function. Development 1999, 126:3303-3312.
    • (1999) Development , vol.126 , pp. 3303-3312
    • Ch'ng, Q.1    Kenyon, C.2
  • 10
    • 84892740091 scopus 로고    scopus 로고
    • De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis
    • Du Z., Santella A., He F., Tiongson M., Bao Z. De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis. Cell 2014, 156:359-372.
    • (2014) Cell , vol.156 , pp. 359-372
    • Du, Z.1    Santella, A.2    He, F.3    Tiongson, M.4    Bao, Z.5
  • 11
  • 13
    • 0028158031 scopus 로고
    • Early transcription in Caenorhabditis elegans embryos
    • Edgar L.G., Wolf N., Wood W.B. Early transcription in Caenorhabditis elegans embryos. Development 1994, 120:443-451.
    • (1994) Development , vol.120 , pp. 443-451
    • Edgar, L.G.1    Wolf, N.2    Wood, W.B.3
  • 14
    • 77951231933 scopus 로고    scopus 로고
    • Methylation and demethylation activities of a C. elegans MLL-like complex attenuate RAS signalling
    • Fisher K., Southall S.M., Wilson J.R., Poulin G.B. Methylation and demethylation activities of a C. elegans MLL-like complex attenuate RAS signalling. Dev. Biol. 2010, 341:142-153.
    • (2010) Dev. Biol. , vol.341 , pp. 142-153
    • Fisher, K.1    Southall, S.M.2    Wilson, J.R.3    Poulin, G.B.4
  • 15
    • 84882874938 scopus 로고    scopus 로고
    • Systems Biology of Caenorhabditis elegans
    • Academic Press, A.J.M. Walhout, M. Vidal, J. Dekker (Eds.)
    • Fraser A.G., Lehner B. Systems Biology of Caenorhabditis elegans. Handbook of Systems Biology 2013, 367-390. Academic Press. A.J.M. Walhout, M. Vidal, J. Dekker (Eds.).
    • (2013) Handbook of Systems Biology , pp. 367-390
    • Fraser, A.G.1    Lehner, B.2
  • 18
    • 25444433592 scopus 로고    scopus 로고
    • Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking
    • Hamahashi S., Onami S., Kitano H. Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking. BMC Bioinformatics 2005, 6:125.
    • (2005) BMC Bioinformatics , vol.6 , pp. 125
    • Hamahashi, S.1    Onami, S.2    Kitano, H.3
  • 19
    • 4544275776 scopus 로고    scopus 로고
    • Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres
    • Hayashi T., Fujita Y., Iwasaki O., Adachi Y., Takahashi K., Yanagida M. Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell 2004, 118:715-729.
    • (2004) Cell , vol.118 , pp. 715-729
    • Hayashi, T.1    Fujita, Y.2    Iwasaki, O.3    Adachi, Y.4    Takahashi, K.5    Yanagida, M.6
  • 20
    • 68349155699 scopus 로고    scopus 로고
    • Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps
    • Hench J., Henriksson J., Luppert M., Burglin T.R. Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps. Dev. Biol. 2009, 333:1-13.
    • (2009) Dev. Biol. , vol.333 , pp. 1-13
    • Hench, J.1    Henriksson, J.2    Luppert, M.3    Burglin, T.R.4
  • 21
    • 0033032274 scopus 로고    scopus 로고
    • EGL-27 is similar to a metastasis-associated factor and controls cell polarity and cell migration in C. elegans
    • Herman M.A., Ch'ng Q., Hettenbach S.M., Ratliff T.M., Kenyon C., Herman R.K. EGL-27 is similar to a metastasis-associated factor and controls cell polarity and cell migration in C. elegans. Development 1999, 126:1055-1064.
    • (1999) Development , vol.126 , pp. 1055-1064
    • Herman, M.A.1    Ch'ng, Q.2    Hettenbach, S.M.3    Ratliff, T.M.4    Kenyon, C.5    Herman, R.K.6
  • 22
    • 0017230019 scopus 로고
    • Development of the reproductive system of Caenorhabditis elegans
    • Hirsh D., Oppenheim D., Klass M. Development of the reproductive system of Caenorhabditis elegans. Dev. Biol. 1976, 49:200-219.
    • (1976) Dev. Biol. , vol.49 , pp. 200-219
    • Hirsh, D.1    Oppenheim, D.2    Klass, M.3
  • 23
    • 84878745222 scopus 로고    scopus 로고
    • Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy
    • Kadoch C., Hargreaves D.C., Hodges C., Elias L., Ho L., Ranish J., Crabtree G.R. Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy. Nat. Genet. 2013, 45:592-601.
    • (2013) Nat. Genet. , vol.45 , pp. 592-601
    • Kadoch, C.1    Hargreaves, D.C.2    Hodges, C.3    Elias, L.4    Ho, L.5    Ranish, J.6    Crabtree, G.R.7
  • 24
    • 0038725897 scopus 로고    scopus 로고
    • Genome-wide RNAi screening in Caenorhabditis elegans
    • Kamath R.S., Ahringer J. Genome-wide RNAi screening in Caenorhabditis elegans. Methods 2003, 30:313-321.
    • (2003) Methods , vol.30 , pp. 313-321
    • Kamath, R.S.1    Ahringer, J.2
  • 26
    • 50849139883 scopus 로고    scopus 로고
    • C. elegans nucleostemin is required for larval growth and germline stem cell division
    • Kudron M.M., Reinke V. C. elegans nucleostemin is required for larval growth and germline stem cell division. PLoS Genet. 2008, 4:e1000181.
    • (2008) PLoS Genet. , vol.4
    • Kudron, M.M.1    Reinke, V.2
  • 27
    • 0033180024 scopus 로고    scopus 로고
    • Patterning the C. elegans embryo: moving beyond the cell lineage
    • Labouesse M., Mango S.E. Patterning the C. elegans embryo: moving beyond the cell lineage. Trends Genet. 1999, 15:307-313.
    • (1999) Trends Genet. , vol.15 , pp. 307-313
    • Labouesse, M.1    Mango, S.E.2
  • 28
    • 33746525415 scopus 로고    scopus 로고
    • Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
    • Lehner B., Crombie C., Tischler J., Fortunato A., Fraser A.G. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat. Genet. 2006, 38:896-903.
    • (2006) Nat. Genet. , vol.38 , pp. 896-903
    • Lehner, B.1    Crombie, C.2    Tischler, J.3    Fortunato, A.4    Fraser, A.G.5
  • 29
    • 70349276689 scopus 로고    scopus 로고
    • Fast interscale wavelet denoising of Poisson-corrupted images
    • Luisier F., Vonesch C., Blu T., Unser M. Fast interscale wavelet denoising of Poisson-corrupted images. Signal Process. 2010, 90:415-427.
    • (2010) Signal Process. , vol.90 , pp. 415-427
    • Luisier, F.1    Vonesch, C.2    Blu, T.3    Unser, M.4
  • 30
    • 84883207130 scopus 로고    scopus 로고
    • A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans
    • Mace D.L., Weisdepp P., Gevirtzman L., Boyle T., Waterston R.H. A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans. G3 (Bethesda) 2013, 3:851-863.
    • (2013) G3 (Bethesda) , vol.3 , pp. 851-863
    • Mace, D.L.1    Weisdepp, P.2    Gevirtzman, L.3    Boyle, T.4    Waterston, R.H.5
  • 32
    • 84880257814 scopus 로고    scopus 로고
    • Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
    • Moore J.L., Du Z., Bao Z. Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis. Development 2013, 140:3266-3274.
    • (2013) Development , vol.140 , pp. 3266-3274
    • Moore, J.L.1    Du, Z.2    Bao, Z.3
  • 35
    • 34347266577 scopus 로고    scopus 로고
    • The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
    • Murray J.I., Bao Z., Boyle T.J., Waterston R.H. The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree. Nat. Protoc. 2006, 1:1468-1476.
    • (2006) Nat. Protoc. , vol.1 , pp. 1468-1476
    • Murray, J.I.1    Bao, Z.2    Boyle, T.J.3    Waterston, R.H.4
  • 37
    • 84880927419 scopus 로고    scopus 로고
    • Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification
    • Nair G., Walton T., Murray J.I., Raj A. Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification. Development 2013, 140:3385-3394.
    • (2013) Development , vol.140 , pp. 3385-3394
    • Nair, G.1    Walton, T.2    Murray, J.I.3    Raj, A.4
  • 39
    • 77956567267 scopus 로고    scopus 로고
    • Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis
    • Pohl C., Bao Z. Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis. Dev. Cell 2010, 19:402-412.
    • (2010) Dev. Cell , vol.19 , pp. 402-412
    • Pohl, C.1    Bao, Z.2
  • 40
    • 0030587611 scopus 로고    scopus 로고
    • Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA
    • Powell-Coffman J.A., Knight J., Wood W.B. Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA. Dev. Biol. 1996, 178:472-483.
    • (1996) Dev. Biol. , vol.178 , pp. 472-483
    • Powell-Coffman, J.A.1    Knight, J.2    Wood, W.B.3
  • 41
    • 84872396644 scopus 로고    scopus 로고
    • A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress
    • Richards J.L., Zacharias A.L., Walton T., Burdick J.T., Murray J.I. A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress. Dev. Biol. 2013, 374:12-23.
    • (2013) Dev. Biol. , vol.374 , pp. 12-23
    • Richards, J.L.1    Zacharias, A.L.2    Walton, T.3    Burdick, J.T.4    Murray, J.I.5
  • 42
    • 78649367847 scopus 로고    scopus 로고
    • A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D
    • Santella A., Du Z., Nowotschin S., Hadjantonakis A.K., Bao Z. A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. BMC Bioinformatics 2010, 11:580.
    • (2010) BMC Bioinformatics , vol.11 , pp. 580
    • Santella, A.1    Du, Z.2    Nowotschin, S.3    Hadjantonakis, A.K.4    Bao, Z.5
  • 44
    • 0031569851 scopus 로고    scopus 로고
    • Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification
    • Schnabel R., Hutter H., Moerman D., Schnabel H. Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification. Dev. Biol. 1997, 184:234-265.
    • (1997) Dev. Biol. , vol.184 , pp. 234-265
    • Schnabel, R.1    Hutter, H.2    Moerman, D.3    Schnabel, H.4
  • 46
    • 0032998903 scopus 로고    scopus 로고
    • The Caenorhabditis elegans genes egl-27 and egr-1 are similar to MTA1, a member of a chromatin regulatory complex, and are redundantly required for embryonic patterning
    • Solari F., Bateman A., Ahringer J. The Caenorhabditis elegans genes egl-27 and egr-1 are similar to MTA1, a member of a chromatin regulatory complex, and are redundantly required for embryonic patterning. Development 1999, 126:2483-2494.
    • (1999) Development , vol.126 , pp. 2483-2494
    • Solari, F.1    Bateman, A.2    Ahringer, J.3
  • 48
    • 0020858899 scopus 로고
    • The embryonic cell lineage of the nematode Caenorhabditis elegans
    • Sulston J.E., Schierenberg E., White J.G., Thomson J.N. The embryonic cell lineage of the nematode Caenorhabditis elegans. Dev. Biol. 1983, 100:64-119.
    • (1983) Dev. Biol. , vol.100 , pp. 64-119
    • Sulston, J.E.1    Schierenberg, E.2    White, J.G.3    Thomson, J.N.4
  • 49
    • 33749125656 scopus 로고    scopus 로고
    • Combinatorial RNA interference in Caenorhabditis elegans reveals that redundancy between gene duplicates can be maintained for more than 80 million years of evolution
    • Tischler J., Lehner B., Chen N., Fraser A.G. Combinatorial RNA interference in Caenorhabditis elegans reveals that redundancy between gene duplicates can be maintained for more than 80 million years of evolution. Genome Biol. 2006, 7:R69.
    • (2006) Genome Biol. , vol.7 , pp. R69
    • Tischler, J.1    Lehner, B.2    Chen, N.3    Fraser, A.G.4
  • 50
    • 84867478412 scopus 로고    scopus 로고
    • RhoA activation during polarization and cytokinesis of the early C. elegans embryo are differentially dependent on NOP-1 and CYK-4
    • Tse Y., Werner M., Longhini K.M., Labbe J.C., Goldstein B., Glotzer M. RhoA activation during polarization and cytokinesis of the early C. elegans embryo are differentially dependent on NOP-1 and CYK-4. Mol. Biol. Cell. 2012, 23:4020-4031.
    • (2012) Mol. Biol. Cell. , vol.23 , pp. 4020-4031
    • Tse, Y.1    Werner, M.2    Longhini, K.M.3    Labbe, J.C.4    Goldstein, B.5    Glotzer, M.6
  • 51
    • 18944403682 scopus 로고    scopus 로고
    • Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase
    • Whetstine J.R., Ceron J., Ladd B., Dufourcq P., Reinke V., Shi Y. Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase. Mol. Cell 2005, 18:483-490.
    • (2005) Mol. Cell , vol.18 , pp. 483-490
    • Whetstine, J.R.1    Ceron, J.2    Ladd, B.3    Dufourcq, P.4    Reinke, V.5    Shi, Y.6
  • 52
    • 38349194085 scopus 로고    scopus 로고
    • Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
    • Zhao Z., Boyle T.J., Bao Z., Murray J.I., Mericle B., Waterston R.H. Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans. Dev. Biol. 2008, 314:93-99.
    • (2008) Dev. Biol. , vol.314 , pp. 93-99
    • Zhao, Z.1    Boyle, T.J.2    Bao, Z.3    Murray, J.I.4    Mericle, B.5    Waterston, R.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.