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Volumn 428, Issue 14, 2016, Pages 2931-2942

The Nucleosome Remodeling and Deacetylase Complex NuRD Is Built from Preformed Catalytically Active Sub-modules

Author keywords

chromatin remodeling; complex assembly; histone modification; nucleosome remodeling and deacetylase NuRD; transcription

Indexed keywords

DNA BINDING PROTEIN; HISTONE DEACETYLASE; METHYL CYTOSINE DNA BINDING DOMAIN PROTEIN 3; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG; URANYL ACETATE; CHROMATIN; NUCLEOSOME; PROTEIN SUBUNIT;

EID: 84966687345     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2016.04.025     Document Type: Article
Times cited : (51)

References (40)
  • 1
    • 0032474826 scopus 로고    scopus 로고
    • A multiple subunit mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase
    • [1] Wade, P.A., Jones, P.L., Vermaak, D., Wolffe, A.P., A multiple subunit mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Curr. Biol. 8 (1998), 843–846.
    • (1998) Curr. Biol. , vol.8 , pp. 843-846
    • Wade, P.A.1    Jones, P.L.2    Vermaak, D.3    Wolffe, A.P.4
  • 2
    • 0032252209 scopus 로고    scopus 로고
    • NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities
    • [2] Xue, Y., Wong, J., Moreno, G.T., Young, M.K., Cote, J., Wang, W., NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol. Cell 2 (1998), 851–861.
    • (1998) Mol. Cell , vol.2 , pp. 851-861
    • Xue, Y.1    Wong, J.2    Moreno, G.T.3    Young, M.K.4    Cote, J.5    Wang, W.6
  • 3
    • 0032578762 scopus 로고    scopus 로고
    • Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex
    • [3] Tong, J.K., Hassig, C.A., Schnitzler, G.R., Kingston, R.E., Schreiber, S.L., Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex. Nature 395 (1998), 917–921.
    • (1998) Nature , vol.395 , pp. 917-921
    • Tong, J.K.1    Hassig, C.A.2    Schnitzler, G.R.3    Kingston, R.E.4    Schreiber, S.L.5
  • 4
    • 0032538293 scopus 로고    scopus 로고
    • The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities
    • [4] Zhang, Y., LeRoy, G., Seelig, H.P., Lane, W.S., Reinberg, D., The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95 (1998), 279–289.
    • (1998) Cell , vol.95 , pp. 279-289
    • Zhang, Y.1    LeRoy, G.2    Seelig, H.P.3    Lane, W.S.4    Reinberg, D.5
  • 5
    • 84872093947 scopus 로고    scopus 로고
    • Transcriptional repressors: multifaceted regulators of gene expression
    • [5] Reynolds, N., O'Shaughnessy, A., Hendrich, B., Transcriptional repressors: multifaceted regulators of gene expression. Development 140 (2013), 505–512.
    • (2013) Development , vol.140 , pp. 505-512
    • Reynolds, N.1    O'Shaughnessy, A.2    Hendrich, B.3
  • 13
    • 84930537565 scopus 로고    scopus 로고
    • Structure and function insights into the NuRD chromatin remodeling complex
    • [13] Torchy, M.P., Hamiche, A., Klaholz, B.P., Structure and function insights into the NuRD chromatin remodeling complex. Cell. Mol. Life Sci. 72 (2015), 2491–2507.
    • (2015) Cell. Mol. Life Sci. , vol.72 , pp. 2491-2507
    • Torchy, M.P.1    Hamiche, A.2    Klaholz, B.P.3
  • 14
    • 84878273525 scopus 로고    scopus 로고
    • The physiological roles of histone deacetylase (HDAC) 1 and 2: complex co-stars with multiple leading parts
    • [14] Kelly, R.D., Cowley, S.M., The physiological roles of histone deacetylase (HDAC) 1 and 2: complex co-stars with multiple leading parts. Biochem. Soc. Trans. 41 (2013), 741–749.
    • (2013) Biochem. Soc. Trans. , vol.41 , pp. 741-749
    • Kelly, R.D.1    Cowley, S.M.2
  • 19
    • 80052016907 scopus 로고    scopus 로고
    • Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence
    • [19] Scarsdale, J.N., Webb, H.D., Ginder, G.D., Williams, D.C. Jr., Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence. Nucleic Acids Res. 39 (2011), 6741–6752.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6741-6752
    • Scarsdale, J.N.1    Webb, H.D.2    Ginder, G.D.3    Williams, D.C.4
  • 21
    • 84925547795 scopus 로고    scopus 로고
    • Purification of recombinant proteins with a multifunctional GFP tag
    • [21] Murayama, T., Kobayashi, T., Purification of recombinant proteins with a multifunctional GFP tag. Methods Mol. Biol. 1177 (2014), 151–161.
    • (2014) Methods Mol. Biol. , vol.1177 , pp. 151-161
    • Murayama, T.1    Kobayashi, T.2
  • 23
    • 84871740411 scopus 로고    scopus 로고
    • Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics
    • e28
    • [23] Smits, A.H., Jansen, P.W., Poser, I., Hyman, A.A., Vermeulen, M., Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics. Nucleic Acids Res., 41, 2013, e28.
    • (2013) Nucleic Acids Res. , vol.41
    • Smits, A.H.1    Jansen, P.W.2    Poser, I.3    Hyman, A.A.4    Vermeulen, M.5
  • 26
    • 77957239250 scopus 로고    scopus 로고
    • GraFix: stabilization of fragile macromolecular complexes for single particle cryo-EM
    • [26] Stark, H., GraFix: stabilization of fragile macromolecular complexes for single particle cryo-EM. Methods Enzymol. 481 (2010), 109–126.
    • (2010) Methods Enzymol. , vol.481 , pp. 109-126
    • Stark, H.1
  • 29
    • 84924875114 scopus 로고    scopus 로고
    • Global and specific responses of the histone acetylome to systematic perturbation
    • [29] Feller, C., Forne, I., Imhof, A., Becker, P.B., Global and specific responses of the histone acetylome to systematic perturbation. Mol. Cell 57 (2015), 559–571.
    • (2015) Mol. Cell , vol.57 , pp. 559-571
    • Feller, C.1    Forne, I.2    Imhof, A.3    Becker, P.B.4
  • 35
    • 84864284373 scopus 로고    scopus 로고
    • Concerted action of the PHD, chromo and motor domains regulates the human chromatin remodelling ATPase CHD4
    • [35] Morra, R., Lee, B.M., Shaw, H., Tuma, R., Mancini, E.J., Concerted action of the PHD, chromo and motor domains regulates the human chromatin remodelling ATPase CHD4. FEBS Lett. 586 (2012), 2513–2521.
    • (2012) FEBS Lett. , vol.586 , pp. 2513-2521
    • Morra, R.1    Lee, B.M.2    Shaw, H.3    Tuma, R.4    Mancini, E.J.5
  • 36
    • 84954181424 scopus 로고    scopus 로고
    • The N-terminal region of Chromodomain helicase DNA-binding protein 4 (CHD4) is essential for activity and contains a high mobility group (HMG) Box-like-domain that can bind poly(ADP-ribose)
    • [36] Silva, A.P., Ryan, D.P., Galanty, Y., Low, J.K., Vandevenne, M., Jackson, S.P., Mackay, J.P., The N-terminal region of Chromodomain helicase DNA-binding protein 4 (CHD4) is essential for activity and contains a high mobility group (HMG) Box-like-domain that can bind poly(ADP-ribose). J. Biol. Chem. 291 (2016), 924–938.
    • (2016) J. Biol. Chem. , vol.291 , pp. 924-938
    • Silva, A.P.1    Ryan, D.P.2    Galanty, Y.3    Low, J.K.4    Vandevenne, M.5    Jackson, S.P.6    Mackay, J.P.7
  • 37
    • 84928579688 scopus 로고    scopus 로고
    • Towards elucidating the stability, dynamics and architecture of the nucleosome remodeling and deacetylase complex by using quantitative interaction proteomics
    • [37] Kloet, S.L., Baymaz, H.I., Makowski, M., Groenewold, V., Jansen, P.W., Berendsen, M., Niazi, H., Kops, G.J., Vermeulen, M., Towards elucidating the stability, dynamics and architecture of the nucleosome remodeling and deacetylase complex by using quantitative interaction proteomics. FEBS J. 282 (2015), 1774–1785.
    • (2015) FEBS J. , vol.282 , pp. 1774-1785
    • Kloet, S.L.1    Baymaz, H.I.2    Makowski, M.3    Groenewold, V.4    Jansen, P.W.5    Berendsen, M.6    Niazi, H.7    Kops, G.J.8    Vermeulen, M.9
  • 38
    • 84878269070 scopus 로고    scopus 로고
    • CHD4 in the DNA-damage response and cell cycle progression: not so NuRDy now
    • [38] O'Shaughnessy, A., Hendrich, B., CHD4 in the DNA-damage response and cell cycle progression: not so NuRDy now. Biochem. Soc. Trans. 41 (2013), 777–782.
    • (2013) Biochem. Soc. Trans. , vol.41 , pp. 777-782
    • O'Shaughnessy, A.1    Hendrich, B.2
  • 39
    • 33845336533 scopus 로고    scopus 로고
    • Bsoft: image processing and molecular modeling for electron microscopy
    • [39] Heymann, J.B., Belnap, D.M., Bsoft: image processing and molecular modeling for electron microscopy. J. Struct. Biol. 157 (2007), 3–18.
    • (2007) J. Struct. Biol. , vol.157 , pp. 3-18
    • Heymann, J.B.1    Belnap, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.