Digital holographic microscopy: Quantitative phase imaging and applications in live cell analysis

Handbook of Coherent-Domain Optical Methods: Biomedical Diagnostics, Environmental Monitoring, and Materials Science:: Second Edition

Volumn 1-2, Issue , 2013, Pages 215-257

  Kemper, Björn ^a   Langehanenberg, Patrik ^a   Kosmeier, Sebastian ^a   Schlichthaber, Frank ^a   Remmersmann, Christian ^a   von Bally, Gert ^a   Rommel, Christina ^a   Dierker, Christian ^a   Schnekenburger, Jörgen ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; CYTOLOGY; FLUIDICS; MICROSCOPIC EXAMINATION; PHASE MEASUREMENT; REFRACTIVE INDEX;

DIGITAL HOLOGRAPHIC MICROSCOPY; DIGITAL HOLOGRAPHY; FLUORESCENCE METHOD; LABEL FREE ANALYSIS; NUMERICAL PROCESSING; PARTIAL COHERENT LIGHTS; QUANTITATIVE PHASE IMAGING; REFRACTIVE INDEX DETERMINATION;

HOLOGRAMS;

EID: 85016932885     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4614-5176-1_6     Document Type: Chapter

References (101)

1. E.M. Goldys (ed.), Fluorescence Applications in Biotechnology and the Life Sciences (Wiley-Blackwell, New-Jersey, 2009)
2. V. Ntziachristos, Fluorescence molecular imaging. Annu. Rev. Biomed. Eng. 8, 1-33 (2006)
3. L. Schermelleh, R. Heintzmann, H. Leonhardt, A guide to super-resolution fluorescence microscopy. J. Cell Biol. 190, 165-175 (2010)
4. B. Huang, M. Bates, X. Zhuang, Super-resolution fluorescence microscopy. Annu. Rev. Biochem. 78, 993-1016 (2009)
5. M. Monici, Cell and tissue autofluorescence research and diagnostic applications, in Biotechnology Annual Review, ed. by M.R. El-Gewely (Elsevier, Amsterdam, 2005), pp. 227-256
6. C.W. Chang, D. Sud, M.A. Mycek, Fluorescence lifetime imaging microscopy. Methods Cell Biol. 81, 495-524 (2007)
7. O. Shimomura, The discovery of aequorin and green fluorescent protein. J. Microsc. 217, 3-15 (2005)
8. P.L. Felgner et al., Lipofection: a highly efficient, lipid-mediated DNA-transfection procedure. Proc. Natl. Acad. Sci. U.S.A. 84, 7413-7417 (1987)
9. X. Tsampoula et al., Fibre based cellular transfection. Opt. Express 16, 17007-17013 (2008)
10. A.F. Fercher, Optical coherence tomography. J. Biomed. Opt. 1, 157-173 (1996)
11. W. Drexler, Ultrahigh-resolution optical coherence tomography. J. Biomed. Opt. 9, 47-74 (2004)
12. L.G. Rodriguez, S.J. Lockett, G.R. Holtom, Coherent anti-stokes raman scattering microscopy: a biological review. Cytometry A 69, 779-791 (2006)
13. T. Kreis, in Holographic Interferometry: Principles and Methods, ed. by W. Osten, vol. 1 (Akademie-Verlag, Berlin, 1996)
14. V.P. Shchepinov, V.S. Pisarev, Strain and Stress Analysis by Holographic and Speckle Interferometry (Wiley, New York, 1996)
15. M.-A. Beeck, W. Hentschel, Laser metrology - a diagnostic tool in automotive development processes. Opt. Lasers Eng. 34, 101-120 (2000)
16. E. Cuche, P. Marquet, C. Depeursinge, Simultaneous amplitude-contrast and quantitative phase-contrast microscopy by numerical reconstruction of Fresnel off-axis holograms. Appl. Opt. 38(24), 6694-7001 (1999)
17. F. Charriere et al., Characterization of microlenses by digital holographic microscopy. Appl. Opt. 45, 829-835 (2006)
18. D. Carl et al., Parameter-optimized digital holographic microscope for high-resolution living-cell analysis. Appl. Opt. 43, 6536-6544 (2004)
19. P. Marquet et al., Digital holographic microscopy: a noninvasive contrast imaging technique allowing quantitative visualization of living cells with subwavelength axial accuracy. Opt. Lett. 30, 468-470 (2005)
20. C.J. Mann et al., High-resolution quantitative phase-contrast microscopy by digital holography. Opt. Express 13, 8693-8698 (2005)
21. B. Kemper, G. von Bally, Digital holographic microscopy for live cell applications and technical inspection. Appl. Opt. 47, A52-A61 (2008)
22. B. Kemper et al., Modular digital holographic microscopy system for marker free quantitative phase contrast imaging of living cells. Proc. SPIE 6191, 61910T (2006)
23. G. von Bally et al., New methods for marker-free live cell and tumor analyis, in Biophotonics: Vision for Better Healthcare, ed. by J. Popp, M. Strehle (Wiley, Berlin, 2006), pp. 301-360
24. B. Kemper et al., Monitoring of laser micromanipulated optically trapped cells by digital holographic microscopy. J. Biophoton. 3, 425-431 (2010)
25. M. Esseling et al., Multimodal biophotonic workstation for live cell analysis. J. Biophoton. 5, 9-13 (2012)
26. L.G. Alexopoulos, G.R. Erickson, F. Guilak, A method for quantifying cell size from differential interference contrast images: validation and application to osmotically stressed chondrocytes. J. Microsc. 205, 125-135 (2001)
27. A. Barty et al., Quantitative optical phase microscopy. Opt. Lett. 23(11), 817-819 (1998)
28. J. Farinas, A.S. Verkman, Cell volume and plasma membrane osmotic water permeability in epithelial cell layers measured by interferometry. Biophys. J. 71, 3511-3522 (1996)
29. T. Ikeda et al., Hilbert phase microscopy for investigating fast dynamics in transparent systems. Opt. Lett. 30(10), 1165-1167 (2005)
30. G. Popescu et al., Fourier phase microscopy for investigation of biological structures and dynamics. Opt. Lett. 29, 2503-2505 (2004)
31. V.P. Tychinskii, Coherent phase microscopy of intracellular processes. Phys. Usp. 44, 617-629 (2001)
32. A.D. Aguirre et al., High-resolution optical coherence microscopy for high-speed, in vivo cellular imaging. Opt. Lett. 28, 2064-2066 (2003)
33. E.A. Swanson et al., In vivo retinal imaging by optical coherence tomography. Opt. Lett. 18, 1864-1866 (1993)
34. Y. Zhao et al., Real-time phase-resolved functional optical coherence tomography by use of optical Hilbert transformation. Opt. Lett. 27, 98-100 (2002)
35. C.G. Rylander et al., Quantitative phase-contrast imaging of cells with phase-sensitive optical coherence microscopy. Opt. Lett. 29(13), 1509-1511 (2004)
36. A.K. Ellerbee, T.L. Reazzo, J.A. Izatt, Investigating nanoscale cellular dynamics with crosssectional spectral domain phase microscopy. Opt. Express 15, 8115-8124 (2007)
37. C. Joo, K.H. Kim, J.F. de Boer, Spectral-domain optical coherence phase and multiphoton microscopy. Opt. Lett. 32, 623-625 (2007)
38. U. Schnars, W.P.O. Juptner, Digital recording and numerical reconstruction of holograms. Meas. Sci. Technol. 13, 85-101 (2002)
39. P. Langehanenberg, G. von Bally, B. Kemper, Application of partial coherent light in live cell imaging with digital holographic microscopy. J. Mod. Opt. 57, 709-717 (2010)
40. B. Kemper et al., Investigation of living pancreas tumor cells by digital holographic microscopy. J. Biomed. Opt. 11(3), 034005-034008 (2006)
41. H. Ding, G. Popescu, Instantaneous spatial light interference microscopy. Opt. Express 18, 1569-1575 (2010)
42. J. Jang et al., Self-reference quantitative phase microscopy for microfluidic devices. Opt. Lett. 35, 514-516 (2010)
43. N.T. Shaked et al., Reflective interferometric chamber for quantitative phase imaging of biological sample dynamics. J. Biomed. Opt. 15, 030503 (2010)
44. G. Popescu et al., Diffraction phase microscopy for quantifying cell structure and dynamics. Opt. Lett. 31, 775-778 (2006)
45. B. Kemper et al., Simplified approach for quantitative digital holographic quantitative phase contrast imaging of living cells. J. Biomed. Opt. 16, 026014 (2011)
46. P. Bon et al., Quadriwave lateral shearing interferometry for quantitative phase microscopy of living cells. Opt. Express 17, 13080-13094 (2009)
47. T.-C. Poon (ed.), Digital Holography and Three-Dimensional Display (Springer, New York, 2006)
48. L. Yaroslavsky, Digital Holography and Digital Image Processing: Principles, Methods, Algorithms (Kluwer, Boston, 2004)
49. T. Kreis, Handbook of Holographic Interferometry: Optical and Digital Methods (Wiley, Weinheim, 2005)
50. M.K. Kim, L. Yu, C.J. Mann, Interference techniques in digital holography. J. Opt. A 8, 518-523 (2006)
51. J.W. Goodman, Introduction to Fourier Optics (McGraw-Hill, San Francisco, 1996)
52. T. Colomb, F. Montfort, C. Depeursinge, Small reconstruction distance in convolution formalism, paper DMA4, in Digital Holography and Three-Dimensional Imaging, OSA Technical Digest, ed. by C. Depeursinge (Optical Society of America, Washington, DC, 2008)
53. M.K. Kim, Principles and techniques of digital holographic microscopy. SPIE Rev. 1, 018005 (2010)
54. S. De Nicola et al., Angular spectrum method with correction of anamorphism for numerical reconstruction of digital holograms on tilted planes. Opt. Express 13, 9935-9940 (2005)
55. N.T. Shaked et al., Whole-cell-analysis of live cardiomyocytes using wide-field interferometric phase microscopy. Biomed. Opt. Express 1, 706-719 (2010)
56. B. Kemper et al., Integral refractive index determination of living suspension cells by multifocus digital holographic phase contrast microscopy. J. Bio. Med. Opt. 12, 054009 (2007)
57. J. Klokkers et al., Atrial natriuretic peptide and nitric oxide signaling antagonizes 2 vasopressin-mediated water permeability in inner medullary 3 collecting duct cells. Am. J. Physiol. Renal Physiol. 297(3), F693-703 (2009)
58. T. Zhang, I. Yamaguchi, Three-dimensional microscopy with phase-shifting digital holography. Opt. Lett. 23, 1221-1223 (1998)
59. I. Yamaguchi et al., Image formation in phase-shifting digital holography and applications to microscopy. Appl. Opt. 40, 6177-6186 (2001)
60. K. Creath, Temporal phase measurement methods, in Interferogram Analysis, ed. by D. Robinson, S. Reid (Institute of Physics Publishing, Bristol, 1993), pp. 94-140
61. F. Dubois, L. Joannes, J.-C. Legros, Improved three-dimensional imaging with a digital holography microscope with a source of partial spatial coherence. Appl. Opt. 38(34), 7085-7094 (1999)
62. B. Kemper et al., Characterisation of light emitting diodes (LEDs) for application in digital holographic microscopy for inspection of micro and nanostructured surfaces. Opt. Lasers Eng. 46, 499-507 (2008)
63. C. Remmersmann et al., Phase noise optimization in temporal phase-shifting digital holography with partial coherence light sources and its application in quantitative cell imaging. Appl. Opt. 48, 1463-1472 (2009)
64. B. Kemper et al., Application of 3D tracking. LED illumination and multi-wavelength techniques for quantitative cell analysis in digital holographic microscopy. Proc. SPIE 7184, 71840R (2009)
65. G. Nomarski, Differential microinterferometer with polarized waves. J. Phys. Radium. 16, 9-13 (1955)
66. B. Kemper et al., Optimization of spatial phase shifting in endoscopic electronic-speckle- pattern-interferometry. Opt. Commun. 217, 151-160 (2003)
67. M. Liebling, T. Blu, M. Unser, Complex-wave retrieval from a single off-axis hologram. J. Opt. Soc. Am. A 21(3), 367-377 (2004)
68. P. Langehanenberg, G. von Bally, B. Kemper, Autofocussing in digital holographic microscopy. 3D Res. 2, 01004 (2011)
69. P. Marquet et al., Analysis of cellular structure and dynamics with digital holographic microscopy. Proc. SPIE 6633, 66330F (2007)
70. M. Takeda, H. Ina, S. Kobayashi, Fourier-transform method of fringe-pattern analysis for computer-based topography and interferometry. J. Opt. Soc. Am. 72, 156-160 (1982)
71. T. Kreis, Digital holographic interference-phase measurement using the Fourier-transform method. J. Opt. Soc. Am. A 3, 847-855 (1986)
72. S. Rasheed et al., Characterization of a newly derived human sarcoma cell line (HT-1080). Cancer 33, 1027-1033 (1974)
73. B. Kemper et al., Self interference digital holographic microscopy approach for inspection of technical and biological phase specimens. Proc. SPIE 8082, 808207 (2011)
74. F. Dubois et al., Focus plane detection criteria in digital holography microscopy by amplitude analysis. Opt. Express 14, 5895-5908 (2006)
75. P. Langehanenberg et al., Autofocusing in digital holographic phase contrast microscopy on pure phase objects for live cell imaging. Appl. Opt. 47, D176-D182 (2008)
76. Y. Sun, S. Duthaler, B.J. Nelson, Autofocusing in computer microscopy: selecting the optimal focus algorithm. Microsc. Res. Tech. 65, 139-149 (2004)
77. F.C. Groen, I.T. Young, G. Ligthart, A comparison of different focus functions for use in autofocus algorithms. Cytometry A 6, 81-91 (1985)
78. L. Firestone et al., Comparison of autofocus methods for automated microscopy. Cytometry 12, 195-206 (1991)
79. M. Bravo-Zanoguera et al., High-performance autofocus circuit for biological microscopy. Rev. Sci. Instrum. 69, 3966-3977 (1998)
80. P. Langehanenberg, B. Kemper, G. von Bally, Autofocus algorithms for digital-holographic microscopy. Proc. SPIE 6633, 66330E (2007)
81. P. Langehanenberg et al., Automated 3D-tracking of living cells by digital holographic microscopy. J. Biomed. Opt. 14, 014018 (2009)
82. J. Kuhn et al., Axial sub-nanometer accuracy in digital holographic microscopy. Meas. Sci. Technol. 19, 074007 (2008)
83. S. Kosmeier et al., Multi-wavelength digital holographic microscopy for high resolution inspection of surfaces and imaging of phase specimen. Proc. SPIE 7718, 77180T (2010)
84. H. Iwai et al., Quantitative phase imaging using actively stabilized phase-shifting low- coherence interferometry. Opt. Lett. 29, 2399-2401 (2004)
85. J. Kuhn et al., Sub-micrometer tomography of cells by multiple-wavelength digital holographic microscopy in reflection. Opt. Lett. 34, 653-655 (2009)
86. S. Kosmeier et al., Reduction of parasitic interferences in digital holographic microscopy by numerically decreased coherence length. Appl. Phys. B 106(1), 107-115 (2012)
87. B. Kemper, P. Langehanenberg, G. von Bally, Methods and applications for marker-free quantitative digital holographic phase contrast imaging in life cell analysis. Proc. SPIE 6796, 6796E (2007)
88. A. Ashkin, Optical trapping and manipulation of neutral particles using lasers. Proc. Natl. Acad. Sci. U.S.A. 94, 4853-4860 (1997)
89. J. Guck et al., Optical deformability of soft biological dielectrics. Phys. Rev. Lett. 84(23), 5451 (2000)
90. B. Rappaz et al., Measurement of the integral refractive index and dynamic cell morphotometry of living cells with digital holographic microscopy. Opt. Express 13, 9361-9373 (2005)
91. W. Choi et al., Tomographic phase microscopy. Nat. Methods 4, 717-719 (2007)
92. M. Debailleul et al., High-resolution three-dimensional tomographic diractive microscopy of transparent inorganic and biological samples. Opt. Lett. 34, 79-81 (2009)
93. S. Kosmeier et al., Determination of the integral refractive index of cells in suspension by digital holographic phase contrast microscopy. Proc. SPIE 6991, 699110 (2008)
94. M. Kemmler et al., Noninvasive timedependent cytometry monitoring by digital holography. J. Biomed. Opt. 12, 064002 (2007)
95. A. Björk, Numerical Methods for Least Squares Problems (SIAM, Philadelphia, 1996)
96. C.E. Rommel et al., Contrast enhanced digital holographic imaging of cellular structures by manipulating intracellular refractive index. J. Biomed. Opt. 15, 041509 (2010)
97. E. Shaffer et al., Label-free second-harmonic phase imaging of biological specimen by digital holographic microscopy. Opt. Lett. 35, 4102-4104 (2010)
98. E. Shaffer, P. Marquet, C. Depeursinge, Real time, nanometric 3D-tracking of nanoparticles made possible by second harmonic generation digital holographic microscopy. Opt. Express 18, 17392-17403 (2010)
99. Y. Cotte et al., Realistic 3D coherent transfer function inverse filtering of complex fields. Biomed. Opt. Express 2, 2216-2230 (2011)
100. Y. Cotte et al., Microscopy image resolution improvement by deconvolution of complex fields. Opt. Express 18, 19462-19478 (2010)
101. S.D. Babacan et al., Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy. Biomed. Opt. Express 2, 1815-1827 (2011)