Realistic 3D coherent transfer function inverse filtering of complex fields

Biomedical Optics Express

Volumn 2, Issue 8, 2011, Pages 2216-2230

  Cotte, Yann ^a   Toy, Fatih M ^a   Arfire, Cristian ^a   Kou, Shan Shan ^a   Boss, Daniel ^a   Bergoënd, Isabelle ^a   Depeursinge, Christian ^a  

^a EPFL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

IMAGE PROCESSING; THREE DIMENSIONAL COMPUTER GRAPHICS; TRANSFER FUNCTIONS;

COHERENT TRANSFER FUNCTIONS; COMPLEX FIELDS; COMPLEX SPECTRUM; DIFFRACTION TOMOGRAPHY; HIGH NA; HIGH RESOLUTION; IMAGING CONDITIONS; IN-PHASE; INVERSE FILTERING; NOVEL TECHNIQUES; SCATTERING OBJECTS; SCATTERING THEORY; THREE-DIMENSIONAL (3D) IMAGE;

THREE DIMENSIONAL;

EID: 84861345895     PISSN: None     EISSN: 21567085     Source Type: Journal    
DOI: 10.1364/BOE.2.002216     Document Type: Article

References (30)

1. Y. Sung, W. Choi, C. Fang-Yen, K. Badizadegan, R. R. Dasari, and M. S. Feld, "Optical diffraction tomography for high resolution live cell imaging," Opt. Express 17(1), 266-277 (2009).
2. C. J. R. Sheppard and M. Gu, "Imaging by a high aperture optical-system," J. Mod. Opt. 40, 1631-1651 (1993).
3. S. Frisken Gibson and F. Lanni, "Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy," J. Opt. Soc. Am. A 8(10), 1601-1613 (1991).
4. R. Arimoto and J. M. Murray, "A common aberration with water-immersion objective lenses," J. Microsc. 216, 49-51 (2004).
5. M. Born and E. Wolf, Principles of Optics, 7th ed. (Cambridge University Press, 1999).
6. A. Devaney, "A filtered backpropagation algorithm for diffraction tomography," Ultrason. Imaging 4(4), 336-350 (1982).
7. Y. Cotte, M. F. Toy, E. Shaffer, N. Pavillon, and C. Depeursinge, "Sub-Rayleigh resolution by phase imaging," Opt. Lett. 35, 2176-2178 (2010).
8. Y. Cotte, M. F. Toy, N. Pavillon, and C. Depeursinge, "Microscopy image resolution improvement by deconvo-lution of complex fields," Opt. Express 18(19), 19462-19478 (2010).
9. M. Gu, Advanced Optical Imaging Theory (Springer-Verlag, 2000).
10. A. Marian, F. Charrière, T. Colomb, F. Montfort, J. Kühn, P. Marquet, and C. Depeursinge, "On the complex three-dimensional amplitude point spread function of lenses and microscope objectives: theoretical aspects, simulations and measurements by digital holography," J. Microsc. 225, 156-169 (2007).
11. Y. Cotte and C. Depeursinge, "Measurement of the complex amplitude point spread function by a diffracting circular aperture," in Focus on Microscopy, Advanced linear and non-linear imaging, pp. TU-AF2-PAR-D (2009).
12. F. Montfort, F. Charrire, T. Colomb, E. Cuche, P. Marquet, and C. Depeursinge, "Purely numerical compensation for microscope objective phase curvature in digital holographic microscopy: influence of digital phase mask position," J. Opt. Soc. Am. A 23(11), 2944-2953 (2006).
13. T. Latychevskaia, F. Gehri, and H.-W. Fink, "Depth-resolved holographic reconstructions by three-dimensional deconvolution," Opt. Express 18(21), 22527-22544 (2010).
14. P. Sarder and A. Nehorai, "Deconvolution methods for 3-D fluorescence microscopy images," IEEE Signal Process. Mag. 23, 32-45 (2006).
15. J. G. McNally, T. Karpova, J. Cooper, and J. A. Conchello, "Three-dimensional imaging by deconvolution microscopy," Methods 19, 373-385 (1999).
16. D. J. Brady, K. Choi, D. L. Marks, R. Horisaki, and S. Lim, "Compressive holography," Opt. Express 17(15), 13040-13049 (2009).
17. E. Cuche, P. Marquet, and C. Depeursinge, "Simultaneous amplitude-contrast and quantitative phase-contrast microscopy by numerical reconstruction of Fresnel off-axis holograms," Appl. Opt. 38, 6994-7001 (1999).
18. X. Heng, X. Q. Cui, D. W. Knapp, J. G. Wu, Z. Yaqoob, E. J. McDowell, D. Psaltis, and C. H. Yang, "Characterization of light collection through a subwavelength aperture from a point source," Opt. Express 14, 10410-10425 (2006).
19. I. Bergoend, C. Arfire, N. Pavillon, and C. Depeursinge, "Diffraction tomography for biological cells imaging using digital holographic microscopy," in Laser Applications in Life Sciences, SPIE vol. 7376 (2010).
20. J. Braat, "Analytical expressions for the wave-front aberration coefficients of a tilted plane-parallel plate," Appl. Opt. 36(32), 8459-8467 (1997).
21. S. S. Kou and C. J. Sheppard, "Imaging in digital holographic microscopy," Opt. Express 15(21), 13,640-13,648 (2007).
22. S. S. Kou and C. J. R. Sheppard, "Image formation in holographic tomography: high-aperture imaging conditions," Appl. Opt. 48(34), H168-H175 (2009).
23. T. Colomb, J. Kühn, F. Charrière, C. Depeursinge, P. Marquet, and N. Aspert, "Total aberrations compensation in digital holographic microscopy with a reference conjugated hologram," Opt. Express 14(10), 4300-4306 (2006).
24. J. A. Lock, "Ray scattering by an arbitrarily oriented spheroid. II. transmission and cross-polarization effects," Appl. Opt. 35(3), 515-531 (1996).
25. D. Q. Chowdhury, P. W. Barber, and S. C. Hill, "Energy-density distribution inside large nonabsorbing spheres by using Mie theory and geometrical optics," Appl. Opt. 31(18), 3518-3523 (1992).
26. J. W. Goodman, Introduction to Fourier Optics (McGraw-Hill, 1968).
27. Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, "Refractive index maps and membrane dynamics of human red blood cells parasitized by Plasmodium falciparum," Proc. Natl. Acad. Sci. U.S.A. 105(37), 13730-13735 (2008).
28. Z. Kam, B. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, "Computational adaptive optics for live three-dimensional biological imaging," Proc. Natl. Acad. Sci. U.S.A. 98(7), 3790-3795 (2001).
29. N. Otsu, "A threshold selection method from gray-level histograms," IEEE Trans. Syst. Man Cybern. 9(1), 62-66 (1979).
30. J. G. McNally, C. Preza, J.-A. Conchello, and L. J. Thomas, "Artifacts in computational optical-sectioning microscopy," J. Opt. Soc. Am. A 11(3), 1056-1067 (1994).