-
1
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson, M.J. (2001). A new method for non-parametric multivariate analysis of variance. Austral Ecol., 26, 32–46.
-
(2001)
Austral Ecol.
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
2
-
-
84891372560
-
Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera)
-
Anderson, K.E., Sheehan, T.H., Mott, B.M., Maes, P., Snyder, L., Schwan, M.R. et al. (2013). Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera). PLoS ONE, 8, e83125.
-
(2013)
PLoS ONE
, vol.8
-
-
Anderson, K.E.1
Sheehan, T.H.2
Mott, B.M.3
Maes, P.4
Snyder, L.5
Schwan, M.R.6
-
3
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D.R. et al. (2011). Enterotypes of the human gut microbiome. Nature, 473, 174–180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
4
-
-
84937442075
-
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
-
Asnicar, F., Weingart, G., Tickle, T.L., Huttenhower, C. & Segata, N. (2015). Compact graphical representation of phylogenetic data and metadata with GraPhlAn. PeerJ, 3, e1029.
-
(2015)
PeerJ
, vol.3
-
-
Asnicar, F.1
Weingart, G.2
Tickle, T.L.3
Huttenhower, C.4
Segata, N.5
-
5
-
-
84917692844
-
Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric Peromyscus populations
-
Baxter, N.T., Wan, J.J., Schubert, A.M., Jenior, M.L., Myers, P. & Schloss, P.D. (2015). Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric Peromyscus populations. Appl. Environ. Microbiol., 81, 396–404.
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 396-404
-
-
Baxter, N.T.1
Wan, J.J.2
Schubert, A.M.3
Jenior, M.L.4
Myers, P.5
Schloss, P.D.6
-
6
-
-
84955326227
-
Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments
-
Berg, M., Stenuit, B., Ho, J., Wang, A., Parke, C., Knight, M. et al. (2016). Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments. ISME J., 10, 1998–2009.
-
(2016)
ISME J.
, vol.10
, pp. 1998-2009
-
-
Berg, M.1
Stenuit, B.2
Ho, J.3
Wang, A.4
Parke, C.5
Knight, M.6
-
7
-
-
84940662313
-
Host biology in light of the microbiome: ten principles of holobionts and hologenomes
-
Bordenstein, S.R. & Theis, K.R. (2015). Host biology in light of the microbiome: ten principles of holobionts and hologenomes. PLoS Biol., 13, e1002226.
-
(2015)
PLoS Biol.
, vol.13
-
-
Bordenstein, S.R.1
Theis, K.R.2
-
8
-
-
84903939893
-
Microbiota-induced changes in Drosophila melanogaster host gene expression and gut morphology
-
Broderick, N.A., Buchon, N. & Lemaitre, B. (2014). Microbiota-induced changes in Drosophila melanogaster host gene expression and gut morphology. MBio, 5, e01117–14.
-
(2014)
MBio
, vol.5
, pp. e01114-e01117
-
-
Broderick, N.A.1
Buchon, N.2
Lemaitre, B.3
-
9
-
-
85007306418
-
Phylosymbiosis: relationships and functional effects of microbial communities across host evolutionary history
-
Brooks, A.W., Kohl, K.D., Brucker, R.M., van Opstal, E.J. & Bordenstein, S.R. (2016). Phylosymbiosis: relationships and functional effects of microbial communities across host evolutionary history. PLoS Biol., 14, e2000225.
-
(2016)
PLoS Biol.
, vol.14
-
-
Brooks, A.W.1
Kohl, K.D.2
Brucker, R.M.3
van Opstal, E.J.4
Bordenstein, S.R.5
-
10
-
-
0000460102
-
Interval estimation for a binomial proportion
-
Brown, L.D., Cai, T.T. & DasGupta, A. (2001). Interval estimation for a binomial proportion. Stat. Sci., 16, 101–133.
-
(2001)
Stat. Sci.
, vol.16
, pp. 101-133
-
-
Brown, L.D.1
Cai, T.T.2
DasGupta, A.3
-
11
-
-
84881225406
-
The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia
-
Brucker, R.M. & Bordenstein, S.R. (2013). The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Science, 341, 667–669.
-
(2013)
Science
, vol.341
, pp. 667-669
-
-
Brucker, R.M.1
Bordenstein, S.R.2
-
12
-
-
4444231429
-
Drosophila lifespan enhancement by exogenous bacteria
-
Brummel, T., Ching, A., Seroude, L., Simon, A.F. & Benzer, S. (2004). Drosophila lifespan enhancement by exogenous bacteria. Proc. Natl Acad. Sci. USA, 101, 12974–12979.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12974-12979
-
-
Brummel, T.1
Ching, A.2
Seroude, L.3
Simon, A.F.4
Benzer, S.5
-
13
-
-
84925500413
-
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
-
Buffie, C.G., Bucci, V., Stein, R.R., McKenney, P.T., Ling, L.L., et al. (2015). Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature, 517, 205-207.
-
(2015)
Nature
, vol.517
, pp. 205-207
-
-
Buffie, C.G.1
Bucci, V.2
Stein, R.R.3
McKenney, P.T.4
Ling, L.L.5
-
14
-
-
84939864763
-
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
-
Burns, A.R., Stephens, W.Z., Stagaman, K., Wong, S., Rawls, J.F., Guillemin, K. et al. (2016). Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development. ISME J., 10, 655–664.
-
(2016)
ISME J.
, vol.10
, pp. 655-664
-
-
Burns, A.R.1
Stephens, W.Z.2
Stagaman, K.3
Wong, S.4
Rawls, J.F.5
Guillemin, K.6
-
15
-
-
75249107844
-
PyNAST: a flexible tool for aligning sequences to a template alignment
-
Caporaso, J.G., Bittinger, K., Bushman, F.D., DeSantis, T.Z., Andersen, G.L. & Knight, R. (2010a). PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics, 26, 266–267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
16
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K. et al. (2010b). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, 7, 335–336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
17
-
-
84937155846
-
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee
-
Ceja-Navarro, J.A., Vega, F.E., Karaoz, U., Hao, Z., Jenkins, S., et al. (2015). Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nature Communications, 6, 7618.
-
(2015)
Nature Communications
, vol.6
, pp. 7618
-
-
Ceja-Navarro, J.A.1
Vega, F.E.2
Karaoz, U.3
Hao, Z.4
Jenkins, S.5
-
18
-
-
84907187619
-
Comment on “The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia
-
Chandler, J.A. & Turelli, M. (2014). Comment on “The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia”. Science, 345, 1011.
-
(2014)
Science
, vol.345
, pp. 1011
-
-
Chandler, J.A.1
Turelli, M.2
-
19
-
-
80053435147
-
Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system
-
Chandler, J.A., Lang, J.M., Bhatnagar, S., Eisen, J.A. & Kopp, A. (2011). Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet., 7, e1002272.
-
(2011)
PLoS Genet.
, vol.7
-
-
Chandler, J.A.1
Lang, J.M.2
Bhatnagar, S.3
Eisen, J.A.4
Kopp, A.5
-
20
-
-
84893283120
-
Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies
-
Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. et al. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecol. Monogr., 84, 45–67.
-
(2014)
Ecol. Monogr.
, vol.84
, pp. 45-67
-
-
Chao, A.1
Gotelli, N.J.2
Hsieh, T.C.3
Sander, E.L.4
Ma, K.H.5
Colwell, R.K.6
-
21
-
-
84953862664
-
Host genetic control of the microbiota mediates the Drosophila nutritional phenotype
-
Chaston, J.M., Dobson, A.J., Newell, P.D. & Douglas, A.E. (2016). Host genetic control of the microbiota mediates the Drosophila nutritional phenotype. Appl. Environ. Microbiol., 82, 671–679.
-
(2016)
Appl. Environ. Microbiol.
, vol.82
, pp. 671-679
-
-
Chaston, J.M.1
Dobson, A.J.2
Newell, P.D.3
Douglas, A.E.4
-
22
-
-
84862637797
-
Gut immune maturation depends on colonization with a host-specific microbiota
-
Chung, H.C., Pamp, S.J., Hill, J.A., Surana, N.K., Edelman, S.M., Troy, E.B. et al. (2012). Gut immune maturation depends on colonization with a host-specific microbiota. Cell, 149, 1578–1593.
-
(2012)
Cell
, vol.149
, pp. 1578-1593
-
-
Chung, H.C.1
Pamp, S.J.2
Hill, J.A.3
Surana, N.K.4
Edelman, S.M.5
Troy, E.B.6
-
23
-
-
34249897253
-
Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster
-
Corby-Harris, V., Pontaroli, A.C., Shimkets, L.J., Bennetzen, J.L., Habel, K.E. & Promislow, D.E.L. (2007). Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster. Appl. Environ. Microbiol., 73, 3470–3479.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3470-3479
-
-
Corby-Harris, V.1
Pontaroli, A.C.2
Shimkets, L.J.3
Bennetzen, J.L.4
Habel, K.E.5
Promislow, D.E.L.6
-
24
-
-
0742323166
-
Partitioning species diversity across landscapes and regions: a hierarchical analysis of alpha, beta, and gamma diversity
-
Crist, T.O., Veech, J.A., Gering, J.C. & Summerville, K.S. (2003). Partitioning species diversity across landscapes and regions: a hierarchical analysis of alpha, beta, and gamma diversity. Am. Nat., 162, 734–743.
-
(2003)
Am. Nat.
, vol.162
, pp. 734-743
-
-
Crist, T.O.1
Veech, J.A.2
Gering, J.C.3
Summerville, K.S.4
-
25
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L.A., Maurice, C.F., Carmody, R.N., Gootenberg, D.B., Button, J.E., Wolfe, B.E. et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature, 505, 559–563.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
26
-
-
0002751004
-
Assembly of species communities
-
In, (eds, Cody, M.L., Diamond, J.M., Harvard University Press Cambridge, Massachusetts, USA
-
Diamond, J.M. (1975). Assembly of species communities. In Ecology and Evolution of Communities. (eds Cody, M.L., Diamond, J.M.). Harvard University Press Cambridge, Massachusetts, USA, pp. 342–444.
-
(1975)
Ecology and Evolution of Communities
, pp. 342-444
-
-
Diamond, J.M.1
-
27
-
-
85017729520
-
-
[R CRAN package of Medium]., Last accessed Nov. 26 2014
-
Dormann, C.F., Fruend, J., Gruber, B., Devoto, M., Iriondo, J., Strauss, R. et al. (2015). BIPARTITE, visualising bipartite networks and calculating some (ecological) indices Version 2.05 [R CRAN package of Medium]. Available at: https://cran.r-project.org/web/packages/bipartite/bipartite.pdf. Last accessed Nov. 26 2014.
-
(2015)
BIPARTITE, visualising bipartite networks and calculating some (ecological) indices Version 2.05
-
-
Dormann, C.F.1
Fruend, J.2
Gruber, B.3
Devoto, M.4
Iriondo, J.5
Strauss, R.6
-
28
-
-
84965103759
-
Holes in the hologenome: why host-microbe symbioses are not holobionts
-
Douglas, A.E. & Werren, J.H. (2016). Holes in the hologenome: why host-microbe symbioses are not holobionts. MBio, 7, e02099–15.
-
(2016)
MBio
, vol.7
, pp. e02015-e02099
-
-
Douglas, A.E.1
Werren, J.H.2
-
29
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R.C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460–2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
30
-
-
84881248839
-
The gut microbiota of insects - diversity in structure and function
-
Engel, P. & Moran, N.A. (2013). The gut microbiota of insects - diversity in structure and function. FEMS Microbiol. Rev., 37, 699–735.
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 699-735
-
-
Engel, P.1
Moran, N.A.2
-
31
-
-
84917735497
-
An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
-
Fadrosh, D.W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R.M. et al. (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome, 2, 6.
-
(2014)
Microbiome
, vol.2
, pp. 6
-
-
Fadrosh, D.W.1
Ma, B.2
Gajer, P.3
Sengamalay, N.4
Ott, S.5
Brotman, R.M.6
-
32
-
-
84968918909
-
Population-level analysis of gut microbiome variation
-
Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K. et al. (2016). Population-level analysis of gut microbiome variation. Science, 352, 560–564.
-
(2016)
Science
, vol.352
, pp. 560-564
-
-
Falony, G.1
Joossens, M.2
Vieira-Silva, S.3
Wang, J.4
Darzi, Y.5
Faust, K.6
-
33
-
-
84884654455
-
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
-
Franzenburg, S., Walter, J., Kunzel, S., Wang, J., Baines, J.F., Bosch, T.C.G. et al. (2013). Distinct antimicrobial peptide expression determines host species-specific bacterial associations. Proc. Natl Acad. Sci. USA, 110, E3730–E3738.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. E3730-E3738
-
-
Franzenburg, S.1
Walter, J.2
Kunzel, S.3
Wang, J.4
Baines, J.F.5
Bosch, T.C.G.6
-
34
-
-
34548779029
-
Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra
-
Fraune, S. & Bosch, T.C.G. (2007). Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra. Proc. Natl Acad. Sci. USA, 104, 13146–13151.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 13146-13151
-
-
Fraune, S.1
Bosch, T.C.G.2
-
35
-
-
85017742487
-
Systematics and ecology of the genus Serratia
-
Grimont, P.A.D. & Grimont, F. (1979). Systematics and ecology of the genus Serratia. Ann. Inst. Pasteur. Mic., A130, 400–401.
-
(1979)
Ann. Inst. Pasteur. Mic.
, vol.A130
, pp. 400-401
-
-
Grimont, P.A.D.1
Grimont, F.2
-
36
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas, B.J., Gevers, D., Earl, A.M., Feldgarden, M., Ward, D.V., Giannoukos, G. et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res., 21, 494–504.
-
(2011)
Genome Res.
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
-
37
-
-
84878663974
-
-
[R CRAN package of Medium]., Last accessed Apr. 1 2016
-
Hsieh, T.C., Ma, K.H. & iNEXT online: interpolation and extrapolation (2013). iNEXT online: interpolation and extrapolation Version 1.0 [R CRAN package of Medium]. Available at: https://chao.shinyapps.io/iNEXT/. Last accessed Apr. 1 2016.
-
(2013)
iNEXT online: interpolation and extrapolation Version 1.0
-
-
Hsieh, T.C.1
Ma, K.H.2
-
39
-
-
85012890939
-
Phylogeography of the subgenus Drosophila (Diptera: Drosophilidae): evolutionary history of faunal divergence between the old and the new worlds
-
Izumitani, H.F., Kusaka, Y., Koshikawa, S., Toda, M.J. & Katoh, T. (2016). Phylogeography of the subgenus Drosophila (Diptera: Drosophilidae): evolutionary history of faunal divergence between the old and the new worlds. PLoS ONE, 11, e0160051.
-
(2016)
PLoS ONE
, vol.11
-
-
Izumitani, H.F.1
Kusaka, Y.2
Koshikawa, S.3
Toda, M.J.4
Katoh, T.5
-
40
-
-
0026302587
-
Aggregation and the coexistence of mycophagous Drosophila
-
Jaenike, J. & James, A.C. (1991). Aggregation and the coexistence of mycophagous Drosophila. J. Anim. Ecol., 60, 913–928.
-
(1991)
J. Anim. Ecol.
, vol.60
, pp. 913-928
-
-
Jaenike, J.1
James, A.C.2
-
41
-
-
84876170550
-
A cross-taxon analysis of insect-associated bacterial diversity
-
Jones, R.T., Sanchez, L.G. & Fierer, N. (2013). A cross-taxon analysis of insect-associated bacterial diversity. PLoS ONE, 8, e61218.
-
(2013)
PLoS ONE
, vol.8
-
-
Jones, R.T.1
Sanchez, L.G.2
Fierer, N.3
-
42
-
-
84908067044
-
Rethinking “enterotypes
-
Knights, D., Ward, T.L., McKinlay, C.E., Miller, H., Gonzalez, A., McDonald, D. et al. (2014). Rethinking “enterotypes”. Cell Host Microbe, 16, 433–437.
-
(2014)
Cell Host Microbe
, vol.16
, pp. 433-437
-
-
Knights, D.1
Ward, T.L.2
McKinlay, C.E.3
Miller, H.4
Gonzalez, A.5
McDonald, D.6
-
43
-
-
82755162640
-
Socially transmitted gut microbiota protect bumble bees against an intestinal parasite
-
Koch, H. & Schmid-Hempel, P. (2011). Socially transmitted gut microbiota protect bumble bees against an intestinal parasite. Proc. Natl Acad. Sci. USA, 108, 19288–19292.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 19288-19292
-
-
Koch, H.1
Schmid-Hempel, P.2
-
44
-
-
84873510063
-
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
-
Koren, O., Knights, D., Gonzalez, A., Waldron, L., Segata, N., Knight, R. et al. (2013). A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput. Biol., 9, e1002863.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Koren, O.1
Knights, D.2
Gonzalez, A.3
Waldron, L.4
Segata, N.5
Knight, R.6
-
45
-
-
84878887226
-
Cultivation and characterization of the gut symbionts of honey bees and bumble bees: Snodgrassella alvi gen. nov., sp. nov., a member of the Neisseriaceae family of the Betaproteobacteria; and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the Enterobacteriales order of the Gammaproteobacteria
-
Kwong, W.K. & Moran, N.A. (2013). Cultivation and characterization of the gut symbionts of honey bees and bumble bees: Snodgrassella alvi gen. nov., sp. nov., a member of the Neisseriaceae family of the Betaproteobacteria; and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the Enterobacteriales order of the Gammaproteobacteria. Int. J. Syst. Evol. Microbiol., 63, 2008–2018.
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 2008-2018
-
-
Kwong, W.K.1
Moran, N.A.2
-
46
-
-
0021575633
-
Predictability, toxicity, and trophic niche breadth in fungus-feeding Drosophilidae (Diptera)
-
Lacy, R.C. (1984). Predictability, toxicity, and trophic niche breadth in fungus-feeding Drosophilidae (Diptera). Ecol. Entomol., 9, 43–54.
-
(1984)
Ecol. Entomol.
, vol.9
, pp. 43-54
-
-
Lacy, R.C.1
-
47
-
-
84863288435
-
Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
-
Lan, Y.M., Wang, Q., Cole, J.R. & Rosen, G.L. (2012). Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms. PLoS ONE, 7, e32491.
-
(2012)
PLoS ONE
, vol.7
-
-
Lan, Y.M.1
Wang, Q.2
Cole, J.R.3
Rosen, G.L.4
-
48
-
-
84938575125
-
Two gut community enterotypes recur in diverse bumblebee species
-
Li, J.L., Powell, J.E., Guo, J., Evans, J.D., Wu, J., Williams, P. et al. (2015). Two gut community enterotypes recur in diverse bumblebee species. Curr. Biol., 25, R652–R653.
-
(2015)
Curr. Biol.
, vol.25
, pp. R652-R653
-
-
Li, J.L.1
Powell, J.E.2
Guo, J.3
Evans, J.D.4
Wu, J.5
Williams, P.6
-
49
-
-
78751670451
-
A simple and distinctive microbiota associated with honey bees and bumble bees
-
Martinson, V.G., Danforth, B.N., Minckley, R.L., Rueppell, O., Tingek, S. & Moran, N.A. (2011). A simple and distinctive microbiota associated with honey bees and bumble bees. Mol. Ecol., 20, 619–628.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 619-628
-
-
Martinson, V.G.1
Danforth, B.N.2
Minckley, R.L.3
Rueppell, O.4
Tingek, S.5
Moran, N.A.6
-
50
-
-
84860462269
-
Establishment of characteristic gut bacteria during development of the honeybee worker
-
Martinson, V.G., Moy, J. & Moran, N.A. (2012). Establishment of characteristic gut bacteria during development of the honeybee worker. Appl. Environ. Microbiol., 78, 2830–2840.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 2830-2840
-
-
Martinson, V.G.1
Moy, J.2
Moran, N.A.3
-
51
-
-
84902154190
-
Genomic features of a bumble bee symbiont reflect its host environment
-
Martinson, V.G., Magoc, T., Koch, H., Salzberg, S.L. & Moran, N.A. (2014). Genomic features of a bumble bee symbiont reflect its host environment. Appl. Environ. Microbiol., 80, 3793–3803.
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 3793-3803
-
-
Martinson, V.G.1
Magoc, T.2
Koch, H.3
Salzberg, S.L.4
Moran, N.A.5
-
52
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D., Price, M.N., Goodrich, J., Nawrocki, E.P., DeSantis, T.Z., Probst, A. et al. (2012). An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J., 6, 610–618.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
-
53
-
-
84874479799
-
Animals in a bacterial world, a new imperative for the life sciences
-
McFall-Ngai, M., Hadfield, M.G., Bosch, T.C., Carey, H.V., Domazet-Lošo, T., Douglas, A.E. et al. (2013). Animals in a bacterial world, a new imperative for the life sciences. Proc. Natl Acad. Sci. USA, 110, 3229–3236.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 3229-3236
-
-
McFall-Ngai, M.1
Hadfield, M.G.2
Bosch, T.C.3
Carey, H.V.4
Domazet-Lošo, T.5
Douglas, A.E.6
-
54
-
-
84957916914
-
Deterministic assembly of complex bacterial communities in guts of germ-free cockroaches
-
Mikaelyan, A., Thompson, C.L., Hofer, M.J. & Brune, A. (2016). Deterministic assembly of complex bacterial communities in guts of germ-free cockroaches. Appl. Environ. Microbiol., 82, 1256–1263.
-
(2016)
Appl. Environ. Microbiol.
, vol.82
, pp. 1256-1263
-
-
Mikaelyan, A.1
Thompson, C.L.2
Hofer, M.J.3
Brune, A.4
-
55
-
-
84870805463
-
Chimpanzees and humans harbour compositionally similar gut enterotypes
-
Moeller, A.H., Degnan, P.H., Pusey, A.E., Wilson, M.L., Hahn, B.H. & Ochman, H. (2012). Chimpanzees and humans harbour compositionally similar gut enterotypes. Nat. Comm., 3, 1179.
-
(2012)
Nat. Comm.
, vol.3
, pp. 1179
-
-
Moeller, A.H.1
Degnan, P.H.2
Pusey, A.E.3
Wilson, M.L.4
Hahn, B.H.5
Ochman, H.6
-
56
-
-
84919473614
-
Rapid changes in the gut microbiome during human evolution
-
Moeller, A.H., Li, Y.Y., Ngole, E.M., Ahuka-Mundeke, S., Lonsdorf, E.V., Pusey, A.E. et al. (2014). Rapid changes in the gut microbiome during human evolution. Proc. Natl Acad. Sci. USA, 111, 16431–16435.
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 16431-16435
-
-
Moeller, A.H.1
Li, Y.Y.2
Ngole, E.M.3
Ahuka-Mundeke, S.4
Lonsdorf, E.V.5
Pusey, A.E.6
-
57
-
-
84979609905
-
Cospeciation of gut microbiota with hominids
-
Moeller, A.H., Caro-Quintero, A., Mjungu, D., Georgiev, A.V., Lonsdorf, E.V., Muller, M.N. et al. (2016). Cospeciation of gut microbiota with hominids. Science, 353, 380–382.
-
(2016)
Science
, vol.353
, pp. 380-382
-
-
Moeller, A.H.1
Caro-Quintero, A.2
Mjungu, D.3
Georgiev, A.V.4
Lonsdorf, E.V.5
Muller, M.N.6
-
58
-
-
84953308141
-
The hologenome concept: helpful or hollow?
-
Moran, N.A. & Sloan, D.B. (2015). The hologenome concept: helpful or hollow? PLoS Biol., 13, e1002311.
-
(2015)
PLoS Biol.
, vol.13
-
-
Moran, N.A.1
Sloan, D.B.2
-
59
-
-
84892453228
-
Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster
-
Newell, P.D. & Douglas, A.E. (2014). Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster. Appl. Environ. Microbiol., 80, 788–796.
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 788-796
-
-
Newell, P.D.1
Douglas, A.E.2
-
60
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
Ochman, H., Worobey, M., Kuo, C.H., Ndjango, J.B.N., Peeters, M., Hahn, B.H. et al. (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol., 8, e1000546.
-
(2010)
PLoS Biol.
, vol.8
-
-
Ochman, H.1
Worobey, M.2
Kuo, C.H.3
Ndjango, J.B.N.4
Peeters, M.5
Hahn, B.H.6
-
61
-
-
84965001094
-
-
[R CRAN package of Medium]., Last accessed Jun. 15 2016
-
Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., O'Hara, R.B., Simpson, G.L. et al. (2015). VEGAN, community ecology package Version 2.3-0 [R CRAN package of Medium]. Available at: https://cran.r-project.org/web/packages/vegan/vegan.pdf. Last accessed Jun. 15 2016.
-
(2015)
VEGAN, community ecology package Version 2.3-0
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
O'Hara, R.B.5
Simpson, G.L.6
-
62
-
-
84910110354
-
Routes of acquisition of the gut microbiota of the honey bee Apis mellifera
-
Powell, J.E., Martinson, V.G., Urban-Mead, K. & Moran, N.A. (2014). Routes of acquisition of the gut microbiota of the honey bee Apis mellifera. Appl. Environ. Microbiol., 80, 7378–7387.
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 7378-7387
-
-
Powell, J.E.1
Martinson, V.G.2
Urban-Mead, K.3
Moran, N.A.4
-
63
-
-
77949718257
-
FastTree 2 - approximately maximum-likelihood trees for large alignments
-
Price, M.N., Dehal, P.S. & Arkin, A.P. (2010). FastTree 2 - approximately maximum-likelihood trees for large alignments. PLoS ONE, 5, e9490.
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
64
-
-
84896388229
-
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
-
Sanders, J.G., Powell, S., Kronauer, D.J., Vasconcelos, H.L., Frederickson, M.E. & Pierce, N.E. (2014). Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Mol. Ecol., 23, 1268–1283.
-
(2014)
Mol. Ecol.
, vol.23
, pp. 1268-1283
-
-
Sanders, J.G.1
Powell, S.2
Kronauer, D.J.3
Vasconcelos, H.L.4
Frederickson, M.E.5
Pierce, N.E.6
-
65
-
-
84961784160
-
Reproduction-immunity trade-offs in insects
-
Schwenke, R.A., Lazzaro, B.P. & Wolfner, M.F. (2016). Reproduction-immunity trade-offs in insects. Annu. Rev. Entomol., 61, 239–256.
-
(2016)
Annu. Rev. Entomol.
, vol.61
, pp. 239-256
-
-
Schwenke, R.A.1
Lazzaro, B.P.2
Wolfner, M.F.3
-
66
-
-
78650534387
-
Commensal bacteria play a role in mating preference of Drosophila melanogaster
-
Sharon, G., Segal, D., Ringo, J.M., Hefetz, A., Zilber-Rosenberg, I. & Rosenberg, E. (2010). Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc. Natl Acad. Sci. USA, 107, 20051–20056.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 20051-20056
-
-
Sharon, G.1
Segal, D.2
Ringo, J.M.3
Hefetz, A.4
Zilber-Rosenberg, I.5
Rosenberg, E.6
-
67
-
-
80555143077
-
Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling
-
Shin, S.C., Kim, S.H., You, H., Kim, B., Kim, A.C., Lee, K.A. et al. (2011). Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling. Science, 334, 670–674.
-
(2011)
Science
, vol.334
, pp. 670-674
-
-
Shin, S.C.1
Kim, S.H.2
You, H.3
Kim, B.4
Kim, A.C.5
Lee, K.A.6
-
68
-
-
0001721428
-
The breeding sites of temperate woodland Drosophila
-
In, (eds, Ashburner, M., Carson, H.L., Thompson, J.N. Jr, Academic Press, New York
-
Shorrocks, B. (1982). The breeding sites of temperate woodland Drosophila. In The Genetics and Biology of Drosophila, Vol. 3b. (eds Ashburner, M., Carson, H.L., Thompson, J.N. Jr). Academic Press, New York, pp. 385–428.
-
(1982)
The Genetics and Biology of Drosophila
, vol.3b
, pp. 385-428
-
-
Shorrocks, B.1
-
69
-
-
33644843833
-
Quantifying the roles of immigration and chance in shaping prokaryote community structure
-
Sloan, W.T., Lunn, M., Woodcock, S., Head, I.M., Nee, S. & Curtis, T.P. (2006). Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ. Microbiol., 8, 732–740.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 732-740
-
-
Sloan, W.T.1
Lunn, M.2
Woodcock, S.3
Head, I.M.4
Nee, S.5
Curtis, T.P.6
-
70
-
-
84881539010
-
Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment
-
Staubach, F., Baines, J.F., Künzel, S., Bik, E.M. & Petrov, D.A. (2013). Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment. PLoS ONE, 8, e70749.
-
(2013)
PLoS ONE
, vol.8
-
-
Staubach, F.1
Baines, J.F.2
Künzel, S.3
Bik, E.M.4
Petrov, D.A.5
-
71
-
-
0025622072
-
The checkerboard score and species distributions
-
Stone, L. & Roberts, A. (1990). The checkerboard score and species distributions. Oecologia, 85, 74–79.
-
(1990)
Oecologia
, vol.85
, pp. 74-79
-
-
Stone, L.1
Roberts, A.2
-
72
-
-
0003895851
-
-
Springer, New York, NY, USA
-
Venables, W.N. & Ripley, B.D. (2002). Modern Applied Statistics with S. Springer, New York, NY, USA.
-
(2002)
Modern Applied Statistics with S
-
-
Venables, W.N.1
Ripley, B.D.2
-
73
-
-
84903722284
-
Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
-
Wang, J., Linnenbrink, M., Künzel, S., Fernandes, R., Nadeau, M.-J., Rosenstiel, P. et al. (2014). Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc. Natl Acad. Sci. USA, 111, E2703–E2710.
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. E2703-E2710
-
-
Wang, J.1
Linnenbrink, M.2
Künzel, S.3
Fernandes, R.4
Nadeau, M.-J.5
Rosenstiel, P.6
-
75
-
-
84884675234
-
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
-
Wong, A.C., Chaston, J.M. & Douglas, A.E. (2013). The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis. ISME J., 7, 1922–1932.
-
(2013)
ISME J.
, vol.7
, pp. 1922-1932
-
-
Wong, A.C.1
Chaston, J.M.2
Douglas, A.E.3
-
76
-
-
84906823319
-
Gut microbiota dictates the metabolic response of Drosophila to diet
-
Wong, A.C.N., Dobson, A.J. & Douglas, A.E. (2014). Gut microbiota dictates the metabolic response of Drosophila to diet. J. Exp. Biol., 217, 1894–1901.
-
(2014)
J. Exp. Biol.
, vol.217
, pp. 1894-1901
-
-
Wong, A.C.N.1
Dobson, A.J.2
Douglas, A.E.3
-
77
-
-
84945290769
-
The host as the driver of the microbiota in the gut and external environment of Drosophila melanogaster
-
Wong, A.C.-N., Luo, Y., Jing, X., Franzenburg, S., Bost, A. & Douglas, A.E. (2015). The host as the driver of the microbiota in the gut and external environment of Drosophila melanogaster. Appl. Environ. Microbiol., 81, 6232–6240.
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 6232-6240
-
-
Wong, A.C.-N.1
Luo, Y.2
Jing, X.3
Franzenburg, S.4
Bost, A.5
Douglas, A.E.6
|