메뉴 건너뛰기




Volumn 13, Issue 12, 2015, Pages

The Hologenome Concept: Helpful or Hollow?

Author keywords

[No Author keywords available]

Indexed keywords

MICROBIAL COMMUNITY; MICROBIOME; NATURAL SELECTION; NULL HYPOTHESIS; SYMBIONT; ANIMAL; BIOLOGICAL MODEL; EVOLUTION; GENOME; GENOMICS; HUMAN; MICROBIAL GENOME; MICROFLORA; NOMENCLATURE; PROCEDURES; SYMBIOSIS; TRENDS;

EID: 84953308141     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1002311     Document Type: Article
Times cited : (322)

References (48)
  • 2
    • 49649111434 scopus 로고    scopus 로고
    • Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
    • Zilber-Rosenberg I, Rosenberg E, Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev. 2008;32: 723–735. doi: 10.1111/j.1574-6976.2008.00123.x 18549407
    • (2008) FEMS Microbiol Rev , vol.32 , pp. 723-735
    • Zilber-Rosenberg, I.1    Rosenberg, E.2
  • 3
    • 84907187619 scopus 로고    scopus 로고
    • Response to Comment on “The hologenomic basis of speciation: Gut bacteria cause hybrid lethality in the genus Nasonia.”
    • Brucker RM, Bordenstein SR, Response to Comment on “The hologenomic basis of speciation: Gut bacteria cause hybrid lethality in the genus Nasonia.” Science. 2014; 345: 1011.
    • (2014) Science , vol.345 , pp. 1011
    • Brucker, R.M.1    Bordenstein, S.R.2
  • 4
    • 0026787534 scopus 로고
    • Phylogenetic consequences of symbioses: Eukarya and Eubacteria are not monophyletic taxa
    • Mindell DP, Phylogenetic consequences of symbioses: Eukarya and Eubacteria are not monophyletic taxa. Biosystems. 1992;27: 53–62. 1391691
    • (1992) Biosystems , vol.27 , pp. 53-62
    • Mindell, D.P.1
  • 6
    • 71249153780 scopus 로고    scopus 로고
    • The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework
    • Rosenberg E, Sharon G, Zilber-Rosenberg I, The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. Environ Microbiol. 2009;11: 2859–2962.
    • (2009) Environ Microbiol , vol.11 , pp. 2859-2962
    • Rosenberg, E.1    Sharon, G.2    Zilber-Rosenberg, I.3
  • 8
    • 84940662313 scopus 로고    scopus 로고
    • Host biology in light of the microbiome: Ten principles of holobionts and hologenomes
    • Bordenstein SR, Theis KR, Host biology in light of the microbiome: Ten principles of holobionts and hologenomes. PLoS Biol. 2015;13: e1002226. doi: 10.1371/journal.pbio.1002226 26284777
    • (2015) PLoS Biol , vol.13 , pp. 1002226
    • Bordenstein, S.R.1    Theis, K.R.2
  • 11
    • 0000651050 scopus 로고
    • Butterflies and plants: a study in coevolution
    • Ehrlich PR, Raven PH, Butterflies and plants: a study in coevolution. Evolution. 1964;18: 586–608.
    • (1964) Evolution , vol.18 , pp. 586-608
    • Ehrlich, P.R.1    Raven, P.H.2
  • 13
    • 0024184955 scopus 로고
    • Vicariance biogeography
    • Wiley EO, Vicariance biogeography. Annu Rev Ecol Syst. 1988;19: 513–542.
    • (1988) Annu Rev Ecol Syst , vol.19 , pp. 513-542
    • Wiley, E.O.1
  • 14
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, et al. Traces of human migrations in Helicobacter pylori populations. Science. 2003;299: 1582–1585. 12624269
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1    Wirth, T.2    Linz, B.3    Pritchard, J.K.4    Stephens, M.5    Kidd, M.6
  • 15
    • 0021545606 scopus 로고
    • Evolution of insect/host plant relationships
    • Jermy T, Evolution of insect/host plant relationships. American Naturalist. 1984;124: 609–630.
    • (1984) American Naturalist , vol.124 , pp. 609-630
    • Jermy, T.1
  • 16
    • 0000351286 scopus 로고
    • Evolution of specialization in insect-umbellifer associations
    • Berenbaum MR, Evolution of specialization in insect-umbellifer associations. Annu Rev Entomol. 1990;35: 319–343.
    • (1990) Annu Rev Entomol , vol.35 , pp. 319-343
    • Berenbaum, M.R.1
  • 17
    • 84867192992 scopus 로고    scopus 로고
    • Insect herbivores drive real-time ecological and evolutionary change in plant populations
    • Agrawal AA, Hastings AP, Johnson M, Maron JL, Insect herbivores drive real-time ecological and evolutionary change in plant populations. Science. 2012;338: 113–116. doi: 10.1126/science.1225977 23042894
    • (2012) Science , vol.338 , pp. 113-116
    • Agrawal, A.A.1    Hastings, A.P.2    Johnson, M.3    Maron, J.L.4
  • 19
    • 84856293856 scopus 로고    scopus 로고
    • The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities
    • Brucker RM, Bordenstein SR, The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities. Evolution. 2012;66: 349–362. doi: 10.1111/j.1558-5646.2011.01454.x 22276533
    • (2012) Evolution , vol.66 , pp. 349-362
    • Brucker, R.M.1    Bordenstein, S.R.2
  • 20
    • 78649978358 scopus 로고    scopus 로고
    • Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    • Ochman H, Worobey M, Kuo CH, Ndjango J, Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol. 2010;8: e1000546. doi: 10.1371/journal.pbio.1000546 21103409
    • (2010) PLoS Biol , vol.8 , pp. 1000546
    • Ochman, H.1    Worobey, M.2    Kuo, C.H.3    Ndjango, J.4
  • 21
    • 84884654455 scopus 로고    scopus 로고
    • Distinct antimicrobial peptide expression determines host species-specific bacterial associations
    • F Franzenburg S, Walter J, Künzel S, Wang J, Baines JF, Bosch TCG, et al. Distinct antimicrobial peptide expression determines host species-specific bacterial associations. Proc Natl Acad Sci USA. 2013;110: E3730–E3738. doi: 10.1073/pnas.1304960110 24003149
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 3730-3738
    • F Franzenburg, S.1    Walter, J.2    Künzel, S.3    Wang, J.4    Baines, J.F.5    Bosch, T.C.G.6
  • 22
    • 84881225406 scopus 로고    scopus 로고
    • The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia
    • Brucker RM, Bordenstein SR, The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Science. 2013;341: 667–669. doi: 10.1126/science.1240659 23868918
    • (2013) Science , vol.341 , pp. 667-669
    • Brucker, R.M.1    Bordenstein, S.R.2
  • 23
    • 58449125407 scopus 로고    scopus 로고
    • Genomics and evolution of heritable bacterial symbionts
    • Moran NA, McCutcheon JP, Nakabachi A, Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet. 2008;42: 165–190. doi: 10.1146/annurev.genet.41.110306.130119 18983256
    • (2008) Annu Rev Genet , vol.42 , pp. 165-190
    • Moran, N.A.1    McCutcheon, J.P.2    Nakabachi, A.3
  • 24
    • 84926331580 scopus 로고    scopus 로고
    • Relatedness, conflict, and the evolution of eusociality
    • Liao X, Rong S, Queller DC, Relatedness, conflict, and the evolution of eusociality. PLoS Biol.; 2015;13: e1002098. doi: 10.1371/journal.pbio.1002098 25799485
    • (2015) PLoS Biol. , vol.13 , pp. 1002098
    • Liao, X.1    Rong, S.2    Queller, D.C.3
  • 25
    • 0028982247 scopus 로고
    • Mutual policing and repression of competition in the evolution of cooperative groups
    • Frank SA, Mutual policing and repression of competition in the evolution of cooperative groups. Nature. 1995;377:520–522. 7566147
    • (1995) Nature , vol.377 , pp. 520-522
    • Frank, S.A.1
  • 28
    • 84863087169 scopus 로고    scopus 로고
    • The central role of the host cell in symbiotic nitrogen metabolism
    • Macdonald SJ, Lin GG, Russell CW, Thomas GH, Douglas AE, The central role of the host cell in symbiotic nitrogen metabolism. Proc Biol Sci. 2012;279: 2965–2973. doi: 10.1098/rspb.2012.0414 22513857
    • (2012) Proc Biol Sci , vol.279 , pp. 2965-2973
    • Macdonald, S.J.1    Lin, G.G.2    Russell, C.W.3    Thomas, G.H.4    Douglas, A.E.5
  • 29
    • 0034618559 scopus 로고    scopus 로고
    • Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp
    • Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H, Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature. 2000;407: 81–86. 10993077
    • (2000) APS. Nature , vol.407 , pp. 81-86
    • Shigenobu, S.1    Watanabe, H.2    Hattori, M.3    Sakaki, Y.4    Ishikawa, H.5
  • 30
    • 79952612931 scopus 로고    scopus 로고
    • Aphid genome expression reveals host-symbiont cooperation in the production of amino acids
    • Hansen AK, Moran NA, Aphid genome expression reveals host-symbiont cooperation in the production of amino acids. Proc Natl Acad Sci USA. 2011;108: 2849–2854. doi: 10.1073/pnas.1013465108 21282658
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 2849-2854
    • Hansen, A.K.1    Moran, N.A.2
  • 31
    • 84861218123 scopus 로고    scopus 로고
    • Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte-embryo interface
    • Koga R, Meng X-Y, Tsuchida T, Fukatsu T, Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte-embryo interface. Proc Natl Acad Sci USA. 2012;109: E1230–7. doi: 10.1073/pnas.1119212109 22517738
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 1230
    • Koga, R.1    Meng, X.-Y.2    Tsuchida, T.3    Fukatsu, T.4
  • 32
    • 34547470085 scopus 로고    scopus 로고
    • Symbiosis as an adaptive process and source of phenotypic complexity
    • Moran NA, Symbiosis as an adaptive process and source of phenotypic complexity. Proc Natl Acad Sci USA. 2007;104 Suppl 1: 8627–8633. 17494762
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 8627-8633
    • Moran, N.A.1
  • 33
    • 84939833651 scopus 로고    scopus 로고
    • Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole
    • Bennett GM, Moran NA, Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole. Proc Natl Acad Sci USA. 2015; 112: 10169–10176. doi: 10.1073/pnas.1421388112 25713367
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 10169-10176
    • Bennett, G.M.1    Moran, N.A.2
  • 34
    • 0037133647 scopus 로고    scopus 로고
    • Conflicting levels of selection in the accumulation of mitochondrial defects in Saccharomyces cerevisiae
    • Taylor DR, Zeyl C, Cooke E, Conflicting levels of selection in the accumulation of mitochondrial defects in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 2002;99: 3690–3694. 11891344
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3690-3694
    • Taylor, D.R.1    Zeyl, C.2    Cooke, E.3
  • 35
    • 79952166885 scopus 로고    scopus 로고
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
    • Fujii S, Bond CS, Small ID, Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc Natl Acad Sci USA. 2011;108: 1723–1728. doi: 10.1073/pnas.1007667108 21220331
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 1723-1728
    • Fujii, S.1    Bond, C.S.2    Small, I.D.3
  • 36
    • 84864458708 scopus 로고    scopus 로고
    • Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes
    • Clark KA, Howe DK, Gafner K, Kusuma D, Ping S, Estes S, et al. Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes. PLoS ONE. 2012;7: e41433. doi: 10.1371/journal.pone.0041433 22859984
    • (2012) PLoS ONE , vol.7 , pp. 41433
    • Clark, K.A.1    Howe, D.K.2    Gafner, K.3    Kusuma, D.4    Ping, S.5    Estes, S.6
  • 37
    • 58149143149 scopus 로고    scopus 로고
    • The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster
    • Teixeira L, Ferreira A, Ashburner M, The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster. PLoS Biol. 2008;6: e2.
    • (2008) PLoS Biol , vol.6 , pp. 2
    • Teixeira, L.1    Ferreira, A.2    Ashburner, M.3
  • 38
    • 77954590041 scopus 로고    scopus 로고
    • Adaptation via symbiosis: recent spread of a Drosophila defensive symbiont
    • Jaenike J, Unckless R, Cockburn SN, Boelio LM, Perlman SJ, Adaptation via symbiosis: recent spread of a Drosophila defensive symbiont. Science. 2010;329: 212–235. doi: 10.1126/science.1188235 20616278
    • (2010) Science , vol.329 , pp. 212-235
    • Jaenike, J.1    Unckless, R.2    Cockburn, S.N.3    Boelio, L.M.4    Perlman, S.J.5
  • 39
    • 52049111890 scopus 로고    scopus 로고
    • Wolbachia: master manipulators of invertebrate biology
    • Werren JH, Baldo L, Clark ME, Wolbachia: master manipulators of invertebrate biology. Nat Rev Microbiol. 2008;6: 741–751. doi: 10.1038/nrmicro1969 18794912
    • (2008) Nat Rev Microbiol , vol.6 , pp. 741-751
    • Werren, J.H.1    Baldo, L.2    Clark, M.E.3
  • 40
    • 0033869879 scopus 로고    scopus 로고
    • Male-killing bacteria in insects: mechanisms, incidence, and implications
    • Hurst GD, Jiggins FM, Male-killing bacteria in insects: mechanisms, incidence, and implications. Emerging Infectious Diseases. 2000;6: 329. 10905965
    • (2000) Emerging Infectious Diseases , vol.6 , pp. 329
    • Hurst, G.D.1    Jiggins, F.M.2
  • 41
    • 4344568725 scopus 로고    scopus 로고
    • The winnowing: establishing the squid–vibrio symbiosis
    • Nyholm SV, McFall-Ngai M, The winnowing: establishing the squid–vibrio symbiosis. Nat Rev Microbiol. 2004;2: 632–642. 15263898
    • (2004) Nat Rev Microbiol , vol.2 , pp. 632-642
    • Nyholm, S.V.1    McFall-Ngai, M.2
  • 42
    • 0036136701 scopus 로고    scopus 로고
    • Capsule-transmitted gut symbiotic bacterium of the Japanese common plataspid stinkbug, Megacopta punctatissima
    • Fukatsu T, Hosokawa T, Capsule-transmitted gut symbiotic bacterium of the Japanese common plataspid stinkbug, Megacopta punctatissima. Appl Environ Microbiol. 2002;68: 389–396. 11772649
    • (2002) Appl Environ Microbiol , vol.68 , pp. 389-396
    • Fukatsu, T.1    Hosokawa, T.2
  • 43
    • 80053435147 scopus 로고    scopus 로고
    • Bacterial communities of diverse Drosophila species: Ecological context of a host–microbe model system
    • Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A, Bacterial communities of diverse Drosophila species: Ecological context of a host–microbe model system. PLoS Genet. 2011;7: e1002272. doi: 10.1371/journal.pgen.1002272 21966276
    • (2011) PLoS Genet , vol.7 , pp. 1002272
    • Chandler, J.A.1    Lang, J.M.2    Bhatnagar, S.3    Eisen, J.A.4    Kopp, A.5
  • 44
    • 79959841282 scopus 로고    scopus 로고
    • Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster
    • Wong CNA, Ng P, Douglas AE, Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ Microbiol. 2011;13: 1889–1900. doi: 10.1111/j.1462-2920.2011.02511.x 21631690
    • (2011) Environ Microbiol , vol.13 , pp. 1889-1900
    • Wong, C.N.A.1    Ng, P.2    Douglas, A.E.3
  • 45
    • 84881248839 scopus 로고    scopus 로고
    • The gut microbiota of insects–diversity in structure and function
    • Engel P, Moran NA, The gut microbiota of insects–diversity in structure and function. FEMS Microbiol Rev. 2013;37: 699–735. doi: 10.1111/1574-6976.12025 23692388
    • (2013) FEMS Microbiol Rev , vol.37 , pp. 699-735
    • Engel, P.1    Moran, N.A.2
  • 46
    • 84899880796 scopus 로고    scopus 로고
    • Metamorphosis of a butterfly-associated bacterial community
    • Hammer TJ, McMillan WO, Fierer N, Metamorphosis of a butterfly-associated bacterial community. PLoS ONE. 2014;9: e86995. doi: 10.1371/journal.pone.0086995 24466308
    • (2014) PLoS ONE , vol.9 , pp. 86995
    • Hammer, T.J.1    McMillan, W.O.2    Fierer, N.3
  • 47
    • 84876414806 scopus 로고    scopus 로고
    • The gut microbiota—masters of host development and physiology
    • Sommer F, Backhed F, The gut microbiota—masters of host development and physiology. Nat Rev Microbiol. 2013. 11;227: 238. doi: 10.1038/nrmicro2974 23435359
    • (2013) Nat Rev Microbiol , vol.11 , pp. 227-238
    • Sommer, F.1    Backhed, F.2
  • 48
    • 84879047636 scopus 로고    scopus 로고
    • A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals
    • Alegado RA, Brown LW, Cao S, Dermenjian RK, Zuzow R, Fairclough SR, et al. A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals. Elife. 2012;1: e00013. doi: 10.7554/eLife.00013 23066504
    • (2012) Elife , vol.1 , pp. 00013
    • Alegado, R.A.1    Brown, L.W.2    Cao, S.3    Dermenjian, R.K.4    Zuzow, R.5    Fairclough, S.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.