-
1
-
-
84964992824
-
Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier
-
Borgdorff, H., Gautam, R., Armstrong, S.D., Xia, D., Ndayisaba, G.F., van Teijlingen, N.H., Geijtenbeek, T.B., Wastling, J.M., van de Wijgert, J.H., Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier. Mucosal Immunol. 9 (2016), 621–633.
-
(2016)
Mucosal Immunol.
, vol.9
, pp. 621-633
-
-
Borgdorff, H.1
Gautam, R.2
Armstrong, S.D.3
Xia, D.4
Ndayisaba, G.F.5
van Teijlingen, N.H.6
Geijtenbeek, T.B.7
Wastling, J.M.8
van de Wijgert, J.H.9
-
2
-
-
21244503098
-
Lactate is mainly fermented to butyrate by human intestinal microfloras but inter-individual variation is evident
-
Bourriaud, C., Robins, R.J., Martin, L., Kozlowski, F., Tenailleau, E., Cherbut, C., Michel, C., Lactate is mainly fermented to butyrate by human intestinal microfloras but inter-individual variation is evident. J. Appl. Microbiol. 99 (2005), 201–212.
-
(2005)
J. Appl. Microbiol.
, vol.99
, pp. 201-212
-
-
Bourriaud, C.1
Robins, R.J.2
Martin, L.3
Kozlowski, F.4
Tenailleau, E.5
Cherbut, C.6
Michel, C.7
-
3
-
-
53449093632
-
Differential Th17 CD4 T-cell depletion in pathogenic and nonpathogenic lentiviral infections
-
Brenchley, J.M., Paiardini, M., Knox, K.S., Asher, A.I., Cervasi, B., Asher, T.E., Scheinberg, P., Price, D.A., Hage, C.A., Kholi, L.M., et al. Differential Th17 CD4 T-cell depletion in pathogenic and nonpathogenic lentiviral infections. Blood 112 (2008), 2826–2835.
-
(2008)
Blood
, vol.112
, pp. 2826-2835
-
-
Brenchley, J.M.1
Paiardini, M.2
Knox, K.S.3
Asher, A.I.4
Cervasi, B.5
Asher, T.E.6
Scheinberg, P.7
Price, D.A.8
Hage, C.A.9
Kholi, L.M.10
-
4
-
-
10044232061
-
The analytical solution of the additive constant problem
-
Cailliez, F., The analytical solution of the additive constant problem. Psychometrika 48 (1983), 305–310.
-
(1983)
Psychometrika
, vol.48
, pp. 305-310
-
-
Cailliez, F.1
-
5
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Peña, A.G., Goodrich, J.K., Gordon, J.I., et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7 (2010), 335–336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
6
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J.G., Lauber, C.L., Walters, W.A., Berg-Lyons, D., Huntley, J., Fierer, N., Owens, S.M., Betley, J., Fraser, L., Bauer, M., et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6 (2012), 1621–1624.
-
(2012)
ISME J.
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
Owens, S.M.7
Betley, J.8
Fraser, L.9
Bauer, M.10
-
7
-
-
84892708174
-
A trial of mass isoniazid preventive therapy for tuberculosis control
-
Churchyard, G.J., Fielding, K.L., Lewis, J.J., Coetzee, L., Corbett, E.L., Godfrey-Faussett, P., Hayes, R.J., Chaisson, R.E., Grant, A.D., Thibela TB Study Team. A trial of mass isoniazid preventive therapy for tuberculosis control. N. Engl. J. Med. 370 (2014), 301–310.
-
(2014)
N. Engl. J. Med.
, vol.370
, pp. 301-310
-
-
Churchyard, G.J.1
Fielding, K.L.2
Lewis, J.J.3
Coetzee, L.4
Corbett, E.L.5
Godfrey-Faussett, P.6
Hayes, R.J.7
Chaisson, R.E.8
Grant, A.D.9
-
8
-
-
84873592714
-
Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection
-
Cosgrove, C., Ussher, J.E., Rauch, A., Gärtner, K., Kurioka, A., Hühn, M.H., Adelmann, K., Kang, Y.H., Fergusson, J.R., Simmonds, P., et al. Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood 121 (2013), 951–961.
-
(2013)
Blood
, vol.121
, pp. 951-961
-
-
Cosgrove, C.1
Ussher, J.E.2
Rauch, A.3
Gärtner, K.4
Kurioka, A.5
Hühn, M.H.6
Adelmann, K.7
Kang, Y.H.8
Fergusson, J.R.9
Simmonds, P.10
-
9
-
-
84910601220
-
Short chain fatty acids potently induce latent HIV-1 in T-cells by activating P-TEFb and multiple histone modifications
-
Das, B., Dobrowolski, C., Shahir, A.M., Feng, Z., Yu, X., Sha, J., Bissada, N.F., Weinberg, A., Karn, J., Ye, F., Short chain fatty acids potently induce latent HIV-1 in T-cells by activating P-TEFb and multiple histone modifications. Virology 474 (2015), 65–81.
-
(2015)
Virology
, vol.474
, pp. 65-81
-
-
Das, B.1
Dobrowolski, C.2
Shahir, A.M.3
Feng, Z.4
Yu, X.5
Sha, J.6
Bissada, N.F.7
Weinberg, A.8
Karn, J.9
Ye, F.10
-
10
-
-
85007158491
-
Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation
-
Dillon, S.M., Kibbie, J., Lee, E.J., Guo, K., Santiago, M.L., Austin, G.L., Gianella, S., Landay, A.L., Donovan, A.M., Frank, D.N., et al. Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation. AIDS 31 (2017), 511–521.
-
(2017)
AIDS
, vol.31
, pp. 511-521
-
-
Dillon, S.M.1
Kibbie, J.2
Lee, E.J.3
Guo, K.4
Santiago, M.L.5
Austin, G.L.6
Gianella, S.7
Landay, A.L.8
Donovan, A.M.9
Frank, D.N.10
-
11
-
-
84999836163
-
Epigenomic profiling of human CD4(+) T cells supports a linear differentiation model and highlights molecular regulators of memory development
-
Durek, P., Nordström, K., Gasparoni, G., Salhab, A., Kressler, C., de Almeida, M., Bassler, K., Ulas, T., Schmidt, F., Xiong, J., et al., DEEP Consortium. Epigenomic profiling of human CD4(+) T cells supports a linear differentiation model and highlights molecular regulators of memory development. Immunity 45 (2016), 1148–1161.
-
(2016)
Immunity
, vol.45
, pp. 1148-1161
-
-
Durek, P.1
Nordström, K.2
Gasparoni, G.3
Salhab, A.4
Kressler, C.5
de Almeida, M.6
Bassler, K.7
Ulas, T.8
Schmidt, F.9
Xiong, J.10
-
12
-
-
77749295656
-
Susceptibility of human Th17 cells to human immunodeficiency virus and their perturbation during infection
-
El Hed, A., Khaitan, A., Kozhaya, L., Manel, N., Daskalakis, D., Borkowsky, W., Valentine, F., Littman, D.R., Unutmaz, D., Susceptibility of human Th17 cells to human immunodeficiency virus and their perturbation during infection. J. Infect. Dis. 201 (2010), 843–854.
-
(2010)
J. Infect. Dis.
, vol.201
, pp. 843-854
-
-
El Hed, A.1
Khaitan, A.2
Kozhaya, L.3
Manel, N.4
Daskalakis, D.5
Borkowsky, W.6
Valentine, F.7
Littman, D.R.8
Unutmaz, D.9
-
13
-
-
79956069829
-
Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells
-
Feng, X., Wang, H., Takata, H., Day, T.J., Willen, J., Hu, H., Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells. Nat. Immunol. 12 (2011), 544–550.
-
(2011)
Nat. Immunol.
, vol.12
, pp. 544-550
-
-
Feng, X.1
Wang, H.2
Takata, H.3
Day, T.J.4
Willen, J.5
Hu, H.6
-
14
-
-
84887301559
-
Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States
-
Fierer, N., Ladau, J., Clemente, J.C., Leff, J.W., Owens, S.M., Pollard, K.S., Knight, R., Gilbert, J.A., McCulley, R.L., Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science 342 (2013), 621–624.
-
(2013)
Science
, vol.342
, pp. 621-624
-
-
Fierer, N.1
Ladau, J.2
Clemente, J.C.3
Leff, J.W.4
Owens, S.M.5
Pollard, K.S.6
Knight, R.7
Gilbert, J.A.8
McCulley, R.L.9
-
15
-
-
33847305053
-
Molecular analysis of human forearm superficial skin bacterial biota
-
Gao, Z., Tseng, C.H., Pei, Z., Blaser, M.J., Molecular analysis of human forearm superficial skin bacterial biota. Proc. Natl. Acad. Sci. USA 104 (2007), 2927–2932.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2927-2932
-
-
Gao, Z.1
Tseng, C.H.2
Pei, Z.3
Blaser, M.J.4
-
16
-
-
84867608542
-
Human thymic MR1-restricted MAIT cells are innate pathogen-reactive effectors that adapt following thymic egress
-
Gold, M.C., Eid, T., Smyk-Pearson, S., Eberling, Y., Swarbrick, G.M., Langley, S.M., Streeter, P.R., Lewinsohn, D.A., Lewinsohn, D.M., Human thymic MR1-restricted MAIT cells are innate pathogen-reactive effectors that adapt following thymic egress. Mucosal Immunol. 6 (2013), 35–44.
-
(2013)
Mucosal Immunol.
, vol.6
, pp. 35-44
-
-
Gold, M.C.1
Eid, T.2
Smyk-Pearson, S.3
Eberling, Y.4
Swarbrick, G.M.5
Langley, S.M.6
Streeter, P.R.7
Lewinsohn, D.A.8
Lewinsohn, D.M.9
-
17
-
-
84879231117
-
Interleukin-17-dependent CXCL13 mediates mucosal vaccine-induced immunity against tuberculosis
-
Gopal, R., Rangel-Moreno, J., Slight, S., Lin, Y., Nawar, H.F., Fallert Junecko, B.A., Reinhart, T.A., Kolls, J., Randall, T.D., Connell, T.D., Khader, S.A., Interleukin-17-dependent CXCL13 mediates mucosal vaccine-induced immunity against tuberculosis. Mucosal Immunol. 6 (2013), 972–984.
-
(2013)
Mucosal Immunol.
, vol.6
, pp. 972-984
-
-
Gopal, R.1
Rangel-Moreno, J.2
Slight, S.3
Lin, Y.4
Nawar, H.F.5
Fallert Junecko, B.A.6
Reinhart, T.A.7
Kolls, J.8
Randall, T.D.9
Connell, T.D.10
Khader, S.A.11
-
18
-
-
84940566834
-
A trial of early antiretrovirals and isoniazid preventative therapy in africa
-
Group, T.A.S., Danel, C., Moh, R., Gabillard, D., Badje, A., Le Carrou, J., Ouassa, T., Ouattara, E., Anzian, A., Ntakpe, J.B., et al. A trial of early antiretrovirals and isoniazid preventative therapy in africa. N Engl J Med. 373 (2015), 808–822.
-
(2015)
N Engl J Med.
, vol.373
, pp. 808-822
-
-
Group, T.A.S.1
Danel, C.2
Moh, R.3
Gabillard, D.4
Badje, A.5
Le Carrou, J.6
Ouassa, T.7
Ouattara, E.8
Anzian, A.9
Ntakpe, J.B.10
-
19
-
-
85009209177
-
Species-independent attraction to biofilms through electrical signaling
-
Humphries, J., Xiong, L., Liu, J., Prindle, A., Yuan, F., Arjes, H.A., Tsimring, L., Suel, G.M., Species-independent attraction to biofilms through electrical signaling. Cell 168 (2017), 200–209.e212.
-
(2017)
Cell
, vol.168
, pp. 200-209.e212
-
-
Humphries, J.1
Xiong, L.2
Liu, J.3
Prindle, A.4
Yuan, F.5
Arjes, H.A.6
Tsimring, L.7
Suel, G.M.8
-
20
-
-
65449122736
-
Reactivation of latent HIV-1 infection by the periodontopathic bacterium Porphyromonas gingivalis involves histone modification
-
Imai, K., Ochiai, K., Okamoto, T., Reactivation of latent HIV-1 infection by the periodontopathic bacterium Porphyromonas gingivalis involves histone modification. J. Immunol. 182 (2009), 3688–3695.
-
(2009)
J. Immunol.
, vol.182
, pp. 3688-3695
-
-
Imai, K.1
Ochiai, K.2
Okamoto, T.3
-
21
-
-
84922022542
-
Asymptomatic HIV-infected individuals on antiretroviral therapy exhibit impaired lung CD4(+) T-cell responses to mycobacteria
-
Jambo, K.C., Banda, D.H., Afran, L., Kankwatira, A.M., Malamba, R.D., Allain, T.J., Gordon, S.B., Heyderman, R.S., Russell, D.G., Mwandumba, H.C., Asymptomatic HIV-infected individuals on antiretroviral therapy exhibit impaired lung CD4(+) T-cell responses to mycobacteria. Am. J. Respir. Crit. Care Med. 190 (2014), 938–947.
-
(2014)
Am. J. Respir. Crit. Care Med.
, vol.190
, pp. 938-947
-
-
Jambo, K.C.1
Banda, D.H.2
Afran, L.3
Kankwatira, A.M.4
Malamba, R.D.5
Allain, T.J.6
Gordon, S.B.7
Heyderman, R.S.8
Russell, D.G.9
Mwandumba, H.C.10
-
22
-
-
34248562792
-
IL-23 and IL-17 in the establishment of protective pulmonary CD4+ T cell responses after vaccination and during Mycobacterium tuberculosis challenge
-
Khader, S.A., Bell, G.K., Pearl, J.E., Fountain, J.J., Rangel-Moreno, J., Cilley, G.E., Shen, F., Eaton, S.M., Gaffen, S.L., Swain, S.L., et al. IL-23 and IL-17 in the establishment of protective pulmonary CD4+ T cell responses after vaccination and during Mycobacterium tuberculosis challenge. Nat. Immunol. 8 (2007), 369–377.
-
(2007)
Nat. Immunol.
, vol.8
, pp. 369-377
-
-
Khader, S.A.1
Bell, G.K.2
Pearl, J.E.3
Fountain, J.J.4
Rangel-Moreno, J.5
Cilley, G.E.6
Shen, F.7
Eaton, S.M.8
Gaffen, S.L.9
Swain, S.L.10
-
23
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille, M.G., Zaneveld, J., Caporaso, J.G., McDonald, D., Knights, D., Reyes, J.A., Clemente, J.C., Burkepile, D.E., Vega Thurber, R.L., Knight, R., et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31 (2013), 814–821.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 814-821
-
-
Langille, M.G.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
Clemente, J.C.7
Burkepile, D.E.8
Vega Thurber, R.L.9
Knight, R.10
-
24
-
-
84874085954
-
Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection
-
Leeansyah, E., Ganesh, A., Quigley, M.F., Sönnerborg, A., Andersson, J., Hunt, P.W., Somsouk, M., Deeks, S.G., Martin, J.N., Moll, M., et al. Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection. Blood 121 (2013), 1124–1135.
-
(2013)
Blood
, vol.121
, pp. 1124-1135
-
-
Leeansyah, E.1
Ganesh, A.2
Quigley, M.F.3
Sönnerborg, A.4
Andersson, J.5
Hunt, P.W.6
Somsouk, M.7
Deeks, S.G.8
Martin, J.N.9
Moll, M.10
-
25
-
-
84929494264
-
Staphylococcus aureus induces hypoxia and cellular damage in porcine dermal explants
-
Lone, A.G., Atci, E., Renslow, R., Beyenal, H., Noh, S., Fransson, B., Abu-Lail, N., Park, J.J., Gang, D.R., Call, D.R., Staphylococcus aureus induces hypoxia and cellular damage in porcine dermal explants. Infect. Immun. 83 (2015), 2531–2541.
-
(2015)
Infect. Immun.
, vol.83
, pp. 2531-2541
-
-
Lone, A.G.1
Atci, E.2
Renslow, R.3
Beyenal, H.4
Noh, S.5
Fransson, B.6
Abu-Lail, N.7
Park, J.J.8
Gang, D.R.9
Call, D.R.10
-
26
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone, C., Knight, R., UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71 (2005), 8228–8235.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
27
-
-
84877878844
-
Widespread colonization of the lung by Tropheryma whipplei in HIV infection
-
Lozupone, C., Cota-Gomez, A., Palmer, B.E., Linderman, D.J., Charlson, E.S., Sodergren, E., Mitreva, M., Abubucker, S., Martin, J., Yao, G., et al., Lung HIV Microbiome Project. Widespread colonization of the lung by Tropheryma whipplei in HIV infection. Am. J. Respir. Crit. Care Med. 187 (2013), 1110–1117.
-
(2013)
Am. J. Respir. Crit. Care Med.
, vol.187
, pp. 1110-1117
-
-
Lozupone, C.1
Cota-Gomez, A.2
Palmer, B.E.3
Linderman, D.J.4
Charlson, E.S.5
Sodergren, E.6
Mitreva, M.7
Abubucker, S.8
Martin, J.9
Yao, G.10
-
28
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M., Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet 17 (2011), 10–12.
-
(2011)
EMBnet
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
29
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D., Price, M.N., Goodrich, J., Nawrocki, E.P., DeSantis, T.Z., Probst, A., Andersen, G.L., Knight, R., Hugenholtz, P., An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6 (2012), 610–618.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
30
-
-
84877899252
-
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
-
Morris, A., Beck, J.M., Schloss, P.D., Campbell, T.B., Crothers, K., Curtis, J.L., Flores, S.C., Fontenot, A.P., Ghedin, E., Huang, L., et al., Lung HIV Microbiome Project. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am. J. Respir. Crit. Care Med. 187 (2013), 1067–1075.
-
(2013)
Am. J. Respir. Crit. Care Med.
, vol.187
, pp. 1067-1075
-
-
Morris, A.1
Beck, J.M.2
Schloss, P.D.3
Campbell, T.B.4
Crothers, K.5
Curtis, J.L.6
Flores, S.C.7
Fontenot, A.P.8
Ghedin, E.9
Huang, L.10
-
31
-
-
84911429654
-
STAMP: statistical analysis of taxonomic and functional profiles
-
Parks, D.H., Tyson, G.W., Hugenholtz, P., Beiko, R.G., STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics 30 (2014), 3123–3124.
-
(2014)
Bioinformatics
, vol.30
, pp. 3123-3124
-
-
Parks, D.H.1
Tyson, G.W.2
Hugenholtz, P.3
Beiko, R.G.4
-
32
-
-
80051670008
-
Host derived inflammatory phospholipids regulate rahU (PA0122) gene, protein, and biofilm formation in Pseudomonas aeruginosa
-
Rao, J., DiGiandomenico, A., Artamonov, M., Leitinger, N., Amin, A.R., Goldberg, J.B., Host derived inflammatory phospholipids regulate rahU (PA0122) gene, protein, and biofilm formation in Pseudomonas aeruginosa. Cell. Immunol. 270 (2011), 95–102.
-
(2011)
Cell. Immunol.
, vol.270
, pp. 95-102
-
-
Rao, J.1
DiGiandomenico, A.2
Artamonov, M.3
Leitinger, N.4
Amin, A.R.5
Goldberg, J.B.6
-
33
-
-
0022204452
-
Estimation of volume of epithelial lining fluid recovered by lavage using urea as marker of dilution
-
Rennard, S.I., Basset, G., Lecossier, D., O'Donnell, K.M., Pinkston, P., Martin, P.G., Crystal, R.G., Estimation of volume of epithelial lining fluid recovered by lavage using urea as marker of dilution. J. Appl. Physiol. 60 (1986), 532–538.
-
(1986)
J. Appl. Physiol.
, vol.60
, pp. 532-538
-
-
Rennard, S.I.1
Basset, G.2
Lecossier, D.3
O'Donnell, K.M.4
Pinkston, P.5
Martin, P.G.6
Crystal, R.G.7
-
34
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder, R., Edwards, R., Quality control and preprocessing of metagenomic datasets. Bioinformatics 27 (2011), 863–864.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
35
-
-
84924172977
-
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
-
Segal, L.N., Alekseyenko, A.V., Clemente, J.C., Kulkarni, R., Wu, B., Gao, Z., Chen, H., Berger, K.I., Goldring, R.M., Rom, W.N., et al. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome, 1, 2013, 19.
-
(2013)
Microbiome
, vol.1
, pp. 19
-
-
Segal, L.N.1
Alekseyenko, A.V.2
Clemente, J.C.3
Kulkarni, R.4
Wu, B.5
Gao, Z.6
Chen, H.7
Berger, K.I.8
Goldring, R.M.9
Rom, W.N.10
-
36
-
-
85008647885
-
Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype
-
Segal, L.N., Clemente, J.C., Tsay, J.C., Koralov, S.B., Keller, B.C., Wu, B.G., Li, Y., Shen, N., Ghedin, E., Morris, A., et al. Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype. Nat. Microbiol., 1, 2016, 16031.
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16031
-
-
Segal, L.N.1
Clemente, J.C.2
Tsay, J.C.3
Koralov, S.B.4
Keller, B.C.5
Wu, B.G.6
Li, Y.7
Shen, N.8
Ghedin, E.9
Morris, A.10
-
37
-
-
84982938369
-
Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung
-
Segal, L.N., Clemente, J.C., Wu, B.G., Wikoff, W.R., Gao, Z., Li, Y., Ko, J.P., Rom, W.N., Blaser, M.J., Weiden, M.D., Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung. Thorax 72 (2017), 13–22.
-
(2017)
Thorax
, vol.72
, pp. 13-22
-
-
Segal, L.N.1
Clemente, J.C.2
Wu, B.G.3
Wikoff, W.R.4
Gao, Z.5
Li, Y.6
Ko, J.P.7
Rom, W.N.8
Blaser, M.J.9
Weiden, M.D.10
-
38
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W.S., Huttenhower, C., Metagenomic biomarker discovery and explanation. Genome Biol., 12, 2011, R60.
-
(2011)
Genome Biol.
, vol.12
, pp. R60
-
-
Segata, N.1
Izard, J.2
Waldron, L.3
Gevers, D.4
Miropolsky, L.5
Garrett, W.S.6
Huttenhower, C.7
-
39
-
-
84878956249
-
Regulatory T cells attenuate mycobacterial stasis in alveolar and blood-derived macrophages from patients with tuberculosis
-
Semple, P.L., Binder, A.B., Davids, M., Maredza, A., van Zyl-Smit, R.N., Dheda, K., Regulatory T cells attenuate mycobacterial stasis in alveolar and blood-derived macrophages from patients with tuberculosis. Am. J. Respir. Crit. Care Med. 187 (2013), 1249–1258.
-
(2013)
Am. J. Respir. Crit. Care Med.
, vol.187
, pp. 1249-1258
-
-
Semple, P.L.1
Binder, A.B.2
Davids, M.3
Maredza, A.4
van Zyl-Smit, R.N.5
Dheda, K.6
-
40
-
-
85030783889
-
The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects
-
Published December 21, 2016
-
Serrano-Villar, S., Vázquez-Castellanos, J.F., Vallejo, A., Latorre, A., Sainz, T., Ferrando-Martínez, S., Rojo, D., Martínez-Botas, J., Del Romero, J., Madrid, N., et al. The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects. Mucosal Immunol., 2016, 10.1038/mi.2016.122 Published December 21, 2016.
-
(2016)
Mucosal Immunol.
-
-
Serrano-Villar, S.1
Vázquez-Castellanos, J.F.2
Vallejo, A.3
Latorre, A.4
Sainz, T.5
Ferrando-Martínez, S.6
Rojo, D.7
Martínez-Botas, J.8
Del Romero, J.9
Madrid, N.10
-
41
-
-
85008640881
-
Immune response and mortality risk relate to distinct lung microbiomes in patients with HIV and pneumonia
-
Shenoy, M.K., Iwai, S., Lin, D.L., Worodria, W., Ayakaka, I., Byanyima, P., Kaswabuli, S., Fong, S., Stone, S., Chang, E., et al. Immune response and mortality risk relate to distinct lung microbiomes in patients with HIV and pneumonia. Am. J. Respir. Crit. Care Med. 195 (2017), 104–114.
-
(2017)
Am. J. Respir. Crit. Care Med.
, vol.195
, pp. 104-114
-
-
Shenoy, M.K.1
Iwai, S.2
Lin, D.L.3
Worodria, W.4
Ayakaka, I.5
Byanyima, P.6
Kaswabuli, S.7
Fong, S.8
Stone, S.9
Chang, E.10
-
42
-
-
0037198693
-
A component of innate immunity prevents bacterial biofilm development
-
Singh, P.K., Parsek, M.R., Greenberg, E.P., Welsh, M.J., A component of innate immunity prevents bacterial biofilm development. Nature 417 (2002), 552–555.
-
(2002)
Nature
, vol.417
, pp. 552-555
-
-
Singh, P.K.1
Parsek, M.R.2
Greenberg, E.P.3
Welsh, M.J.4
-
43
-
-
84908015217
-
Transforming growth factor β-mediated suppression of antitumor T cells requires FoxP1 transcription factor expression
-
Stephen, T.L., Rutkowski, M.R., Allegrezza, M.J., Perales-Puchalt, A., Tesone, A.J., Svoronos, N., Nguyen, J.M., Sarmin, F., Borowsky, M.E., Tchou, J., Conejo-Garcia, J.R., Transforming growth factor β-mediated suppression of antitumor T cells requires FoxP1 transcription factor expression. Immunity 41 (2014), 427–439.
-
(2014)
Immunity
, vol.41
, pp. 427-439
-
-
Stephen, T.L.1
Rutkowski, M.R.2
Allegrezza, M.J.3
Perales-Puchalt, A.4
Tesone, A.J.5
Svoronos, N.6
Nguyen, J.M.7
Sarmin, F.8
Borowsky, M.E.9
Tchou, J.10
Conejo-Garcia, J.R.11
-
44
-
-
84893704050
-
Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
-
Trompette, A., Gollwitzer, E.S., Yadava, K., Sichelstiel, A.K., Sprenger, N., Ngom-Bru, C., Blanchard, C., Junt, T., Nicod, L.P., Harris, N.L., Marsland, B.J., Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat. Med. 20 (2014), 159–166.
-
(2014)
Nat. Med.
, vol.20
, pp. 159-166
-
-
Trompette, A.1
Gollwitzer, E.S.2
Yadava, K.3
Sichelstiel, A.K.4
Sprenger, N.5
Ngom-Bru, C.6
Blanchard, C.7
Junt, T.8
Nicod, L.P.9
Harris, N.L.10
Marsland, B.J.11
-
45
-
-
84988975711
-
Effect of advanced HIV infection on the respiratory microbiome
-
Twigg, H.L. 3rd, Knox, K.S., Zhou, J., Crothers, K.A., Nelson, D.E., Toh, E., Day, R.B., Lin, H., Gao, X., Dong, Q., et al. Effect of advanced HIV infection on the respiratory microbiome. Am. J. Respir. Crit. Care Med. 194 (2016), 226–235.
-
(2016)
Am. J. Respir. Crit. Care Med.
, vol.194
, pp. 226-235
-
-
Twigg, H.L.1
Knox, K.S.2
Zhou, J.3
Crothers, K.A.4
Nelson, D.E.5
Toh, E.6
Day, R.B.7
Lin, H.8
Gao, X.9
Dong, Q.10
-
46
-
-
39349088338
-
Effect of highly active antiretroviral therapy on viral burden in the lungs of HIV-infected subjects
-
Twigg Iii, H.L., Weiden, M., Valentine, F., Schnizlein-Bick, C.T., Bassett, R., Zheng, L., Wheat, J., Day, R.B., Rominger, H., Collman, R.G., et al., AIDS Clinical Trials Group Protocol 723 Team. Effect of highly active antiretroviral therapy on viral burden in the lungs of HIV-infected subjects. J. Infect. Dis. 197 (2008), 109–116.
-
(2008)
J. Infect. Dis.
, vol.197
, pp. 109-116
-
-
Twigg Iii, H.L.1
Weiden, M.2
Valentine, F.3
Schnizlein-Bick, C.T.4
Bassett, R.5
Zheng, L.6
Wheat, J.7
Day, R.B.8
Rominger, H.9
Collman, R.G.10
-
47
-
-
67749086601
-
Inhibitory effects of lactoferrin on growth and biofilm formation of Porphyromonas gingivalis and Prevotella intermedia
-
Wakabayashi, H., Yamauchi, K., Kobayashi, T., Yaeshima, T., Iwatsuki, K., Yoshie, H., Inhibitory effects of lactoferrin on growth and biofilm formation of Porphyromonas gingivalis and Prevotella intermedia. Antimicrob. Agents Chemother. 53 (2009), 3308–3316.
-
(2009)
Antimicrob. Agents Chemother.
, vol.53
, pp. 3308-3316
-
-
Wakabayashi, H.1
Yamauchi, K.2
Kobayashi, T.3
Yaeshima, T.4
Iwatsuki, K.5
Yoshie, H.6
-
48
-
-
84902659927
-
The transcription factor Foxp1 is a critical negative regulator of the differentiation of follicular helper T cells
-
Wang, H., Geng, J., Wen, X., Bi, E., Kossenkov, A.V., Wolf, A.I., Tas, J., Choi, Y.S., Takata, H., Day, T.J., et al. The transcription factor Foxp1 is a critical negative regulator of the differentiation of follicular helper T cells. Nat. Immunol. 15 (2014), 667–675.
-
(2014)
Nat. Immunol.
, vol.15
, pp. 667-675
-
-
Wang, H.1
Geng, J.2
Wen, X.3
Bi, E.4
Kossenkov, A.V.5
Wolf, A.I.6
Tas, J.7
Choi, Y.S.8
Takata, H.9
Day, T.J.10
-
49
-
-
84974839145
-
Cutting edge: Foxp1 controls naive CD8+ T cell quiescence by simultaneously repressing key pathways in cellular metabolism and cell cycle progression
-
Wei, H., Geng, J., Shi, B., Liu, Z., Wang, Y.H., Stevens, A.C., Sprout, S.L., Yao, M., Wang, H., Hu, H., Cutting edge: Foxp1 controls naive CD8+ T cell quiescence by simultaneously repressing key pathways in cellular metabolism and cell cycle progression. J. Immunol. 196 (2016), 3537–3541.
-
(2016)
J. Immunol.
, vol.196
, pp. 3537-3541
-
-
Wei, H.1
Geng, J.2
Shi, B.3
Liu, Z.4
Wang, Y.H.5
Stevens, A.C.6
Sprout, S.L.7
Yao, M.8
Wang, H.9
Hu, H.10
-
50
-
-
84861206347
-
Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population
-
Williamson, K.S., Richards, L.A., Perez-Osorio, A.C., Pitts, B., McInnerney, K., Stewart, P.S., Franklin, M.J., Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population. J. Bacteriol. 194 (2012), 2062–2073.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2062-2073
-
-
Williamson, K.S.1
Richards, L.A.2
Perez-Osorio, A.C.3
Pitts, B.4
McInnerney, K.5
Stewart, P.S.6
Franklin, M.J.7
|