메뉴 건너뛰기




Volumn 194, Issue 2, 2016, Pages 226-235

Effect of advanced HIV infection on the respiratory microbiome

Author keywords

Advanced disease; HIV infection; Lung microbiome; Microbial diversity

Indexed keywords

ANTI HUMAN IMMUNODEFICIENCY VIRUS AGENT; RNA 16S; SALBUTAMOL;

EID: 84988975711     PISSN: 1073449X     EISSN: 15354970     Source Type: Journal    
DOI: 10.1164/rccm.201509-1875OC     Document Type: Article
Times cited : (76)

References (37)
  • 5
    • 79958069364 scopus 로고    scopus 로고
    • The airway microbiome in cystic fibrosis and implications for treatment
    • Zemanick ET, Sagel SD, Harris JK. The airway microbiome in cystic fibrosis and implications for treatment. Curr Opin Pediatr 2011;23: 319-324.
    • (2011) Curr Opin Pediatr , vol.23 , pp. 319-324
    • Zemanick, E.T.1    Sagel, S.D.2    Harris, J.K.3
  • 6
    • 33646891995 scopus 로고    scopus 로고
    • The changing spectrum of pulmonary disease in patients with HIV infection on antiretroviral therapy
    • Grubb JR, Moorman AC, Baker RK, Masur H. The changing spectrum of pulmonary disease in patients with HIV infection on antiretroviral therapy. AIDS 2006;20:1095-1107.
    • (2006) AIDS , vol.20 , pp. 1095-1107
    • Grubb, J.R.1    Moorman, A.C.2    Baker, R.K.3    Masur, H.4
  • 9
    • 84969385945 scopus 로고    scopus 로고
    • Comparison of whole and acellular bronchoalveolar lavage to oral wash microbiomes. Should acellular bronchoalveolar lavage be the standard?
    • Twigg HL, Day RB, Gregory RL, Dong Q, Rong R, Knox KS, Crothers K, Sodergren E, Weinstock G. Comparison of whole and acellular bronchoalveolar lavage to oral wash microbiomes. Should acellular bronchoalveolar lavage be the standard? Ann Am Thorac Soc 2014; 11:S72-S73.
    • (2014) Ann Am Thorac Soc , vol.11 , pp. S72-S73
    • Twigg, H.L.1    Day, R.B.2    Gregory, R.L.3    Dong, Q.4    Rong, R.5    Knox, K.S.6    Crothers, K.7    Sodergren, E.8    Weinstock, G.9
  • 11
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007;73:5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 15
    • 84876427116 scopus 로고    scopus 로고
    • Investigation of the effect of type 2 diabetes mellitus on subgingival plaque microbiota by high-throughput 16S rDNA pyrosequencing
    • Zhou M, Rong R, Munro D, Zhu C, Gao X, Zhang Q, Dong Q. Investigation of the effect of type 2 diabetes mellitus on subgingival plaque microbiota by high-throughput 16S rDNA pyrosequencing. PLoS One 2013;8:e61516.
    • (2013) PLoS One , vol.8 , pp. e61516
    • Zhou, M.1    Rong, R.2    Munro, D.3    Zhu, C.4    Gao, X.5    Zhang, Q.6    Dong, Q.7
  • 16
    • 0028782143 scopus 로고
    • Phylogenetic pattern and the quantification of organismal biodiversity
    • Faith DP. Phylogenetic pattern and the quantification of organismal biodiversity. Philos Trans R Soc Lond B Biol Sci 1994;345:45-58.
    • (1994) Philos Trans R Soc Lond B Biol Sci , vol.345 , pp. 45-58
    • Faith, D.P.1
  • 18
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005;71:8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 19
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee SC, Urban DL. The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 2007;22:1-19.
    • (2007) J Stat Softw , vol.22 , pp. 1-19
    • Goslee, S.C.1    Urban, D.L.2
  • 20
    • 78751575501 scopus 로고    scopus 로고
    • UniFrac: An effective distance metric for microbial community comparison
    • Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. UniFrac: an effective distance metric for microbial community comparison. ISME J 2011;5:169-172.
    • (2011) ISME J , vol.5 , pp. 169-172
    • Lozupone, C.1    Lladser, M.E.2    Knights, D.3    Stombaugh, J.4    Knight, R.5
  • 21
    • 84876427223 scopus 로고    scopus 로고
    • Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
    • McMurdie PJ, Holmes S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One 2013;8:e61217.
    • (2013) PLoS One , vol.8 , pp. e61217
    • McMurdie, P.J.1    Holmes, S.2
  • 22
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson MJ. A new method for non-parametric multivariate analysis of variance. Austral Ecol 2001;26:32-46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 23
    • 0035133496 scopus 로고    scopus 로고
    • Fitting multivariate models to community data: A comment on distance based redundancy analysis
    • McArdle BH, Anderson MJ. Fitting multivariate models to community data: a comment on distance based redundancy analysis. Ecology 2001;82:290-297.
    • (2001) Ecology , vol.82 , pp. 290-297
    • McArdle, B.H.1    Anderson, M.J.2
  • 24
    • 84891355477 scopus 로고    scopus 로고
    • Permanova, anosim, and the mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
    • Anderson MJ, Walsh DCI. Permanova, anosim, and the mantel test in the face of heterogeneous dispersions: what null hypothesis are you testing? Ecol Monogr 2013;83:557-574.
    • (2013) Ecol Monogr , vol.83 , pp. 557-574
    • Anderson, M.J.1    Walsh, D.C.I.2
  • 25
    • 33645053483 scopus 로고    scopus 로고
    • Distance-based tests for homogeneity of multivariate dispersions
    • Anderson MJ. Distance-based tests for homogeneity of multivariate dispersions. Biometrics 2006;62:245-253.
    • (2006) Biometrics , vol.62 , pp. 245-253
    • Anderson, M.J.1
  • 26
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
    • Hamady M, Knight R. Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 2009;19:1141-1152.
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 27
    • 84959885027 scopus 로고    scopus 로고
    • Application of zero-inflated negative binomial mixed model to human microbiota sequence data
    • [accessed 2015 Sept 1]
    • Fang R, Wagner BD, Harris JK, Fillon SA. Application of zero-inflated negative binomial mixed model to human microbiota sequence data. PeerJ PrePrints 2014 [accessed 2015 Sept 1]. Available from: http://dx.doi.org/10.7287/peerj.preprints.215v1
    • (2014) PeerJ PrePrints
    • Fang, R.1    Wagner, B.D.2    Harris, J.K.3    Fillon, S.A.4
  • 31
    • 84899678439 scopus 로고    scopus 로고
    • The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients
    • Iwai S, Huang D, Fong S, Jarlsberg LG, Worodria W, Yoo S, Cattamanchi A, Davis JL, Kaswabuli S, Segal M, et al. The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients. PLoS One 2014;9:e95726.
    • (2014) PLoS One , vol.9 , pp. e95726
    • Iwai, S.1    Huang, D.2    Fong, S.3    Jarlsberg, L.G.4    Worodria, W.5    Yoo, S.6    Cattamanchi, A.7    Davis, J.L.8    Kaswabuli, S.9    Segal, M.10
  • 33
    • 79960645254 scopus 로고    scopus 로고
    • An official ATS workshop report: Emerging issues and current controversies in HIV-associated pulmonary diseases
    • Morris A, Crothers K, Beck JM, Huang L; American Thoracic Society Committee on HIV Pulmonary Disease. An official ATS workshop report: Emerging issues and current controversies in HIV-associated pulmonary diseases. Proc Am Thorac Soc 2011;8:17-26.
    • (2011) Proc Am Thorac Soc , vol.8 , pp. 17-26
    • Morris, A.1    Crothers, K.2    Beck, J.M.3    Huang, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.