-
1
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff, L.A., Sethupathy, P., Junkins, H.A., Ramos, E.M., Mehta, J.P., Collins, F.S. and Manolio, T.A. (2009) Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl. Acad. Sci. U.S.A., 106, 9362-9367.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
2
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
Maurano, M.T., Humbert, R., Rynes, E., Thurman, R.E., Haugen, E., Wang, H., Reynolds, A.P., Sandstrom, R., Qu, H., Brody, J. et al. (2012) Systematic localization of common disease-associated variation in regulatory DNA. Science, 337, 1190-1195.
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
Humbert, R.2
Rynes, E.3
Thurman, R.E.4
Haugen, E.5
Wang, H.6
Reynolds, A.P.7
Sandstrom, R.8
Qu, H.9
Brody, J.10
-
3
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA elements) project
-
Consortium, E.P. (2004) The ENCODE (ENCyclopedia Of DNA Elements) project. Science, 306, 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
Consortium, E.P.1
-
4
-
-
77957940722
-
The NIH roadmap epigenomics mapping consortium
-
Bernstein, B.E., Stamatoyannopoulos, J.A., Costello, J.F., Ren, B., Milosavljevic, A., Meissner, A., Kellis, M., Marra, M.A., Beaudet, A.L., Ecker, J.R. et al. (2010) The NIH roadmap epigenomics mapping consortium. Nat. Biotechnol., 28, 1045-1048.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1045-1048
-
-
Bernstein, B.E.1
Stamatoyannopoulos, J.A.2
Costello, J.F.3
Ren, B.4
Milosavljevic, A.5
Meissner, A.6
Kellis, M.7
Marra, M.A.8
Beaudet, A.L.9
Ecker, J.R.10
-
5
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N.D., Stuart, R.K., Hon, G., Fu, Y., Ching, C.W., Hawkins, R.D., Barrera, L.O., Van Calcar, S., Qu, C., Ching, K.A. et al. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet., 39, 311-318.
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
6
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel, A., Blow, M.J., Li, Z., Zhang, T., Akiyama, J.A., Holt, A., Plajzer-Frick, I., Shoukry, M., Wright, C., Chen, F. et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature, 457, 854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
7
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N.D., Hon, G.C., Hawkins, R.D., Kheradpour, P., Stark, A., Harp, L.F., Ye, Z., Lee, L.K., Stuart, R.K., Ching, C.W. et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature, 459, 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
8
-
-
84939175707
-
DELTA: A distal enhancer locating tool based on AdaBoost algorithm and shape features of chromatin modifications
-
Lu, Y., Qu, W., Shan, G. and Zhang, C. (2015) DELTA: a distal enhancer locating tool based on AdaBoost algorithm and shape features of chromatin modifications. PLoS One, 10, e0130622.
-
(2015)
PLoS One
, vol.10
, pp. e0130622
-
-
Lu, Y.1
Qu, W.2
Shan, G.3
Zhang, C.4
-
9
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst, J., Kheradpour, P., Mikkelsen, T.S., Shoresh, N., Ward, L.D., Epstein, C.B., Zhang, X., Wang, L., Issner, R., Coyne, M. et al. (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature, 473, 43-49.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
10
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal, A., Lajoie, B.R., Jain, G. and Dekker, J. (2012) The long-range interaction landscape of gene promoters. Nature, 489, 109-113.
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
11
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E., van Berkum, N.L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., Amit, I., Lajoie, B.R., Sabo, P.J., Dorschner, M.O. et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science, 326, 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
12
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
Rao, S.S., Huntley, M.H., Durand, N.C., Stamenova, E.K., Bochkov, I.D., Robinson, J.T., Sanborn, A.L., Machol, I., Omer, A.D., Lander, E.S. et al. (2014) A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell, 159, 1665-1680.
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
-
13
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S. and Ren, B. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature, 485, 376-380.
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
14
-
-
66149167455
-
ChIP-based methods for the identification of long-range chromatin interactions
-
Fullwood, M.J. and Ruan, Y. (2009) ChIP-based methods for the identification of long-range chromatin interactions. J. Cell. Biochem., 107, 30-39.
-
(2009)
J. Cell. Biochem.
, vol.107
, pp. 30-39
-
-
Fullwood, M.J.1
Ruan, Y.2
-
15
-
-
63849091245
-
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
-
Fullwood, M.J., Wei, C.L., Liu, E.T. and Ruan, Y. (2009) Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. Genome Res., 19, 521-532.
-
(2009)
Genome Res.
, vol.19
, pp. 521-532
-
-
Fullwood, M.J.1
Wei, C.L.2
Liu, E.T.3
Ruan, Y.4
-
16
-
-
84930092058
-
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
-
Mifsud, B., Tavares-Cadete, F., Young, A.N., Sugar, R., Schoenfelder, S., Ferreira, L., Wingett, S.W., Andrews, S., Grey, W., Ewels, P.A. et al. (2015) Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Nat. Genet., 47, 598-606.
-
(2015)
Nat. Genet.
, vol.47
, pp. 598-606
-
-
Mifsud, B.1
Tavares-Cadete, F.2
Young, A.N.3
Sugar, R.4
Schoenfelder, S.5
Ferreira, L.6
Wingett, S.W.7
Andrews, S.8
Grey, W.9
Ewels, P.A.10
-
17
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
Handoko, L., Xu, H., Li, G., Ngan, C.Y., Chew, E., Schnapp, M., Lee, C.W., Ye, C., Ping, J.L., Mulawadi, F. et al. (2011) CTCF-mediated functional chromatin interactome in pluripotent cells. Nat. Genet., 43, 630-638.
-
(2011)
Nat. Genet.
, vol.43
, pp. 630-638
-
-
Handoko, L.1
Xu, H.2
Li, G.3
Ngan, C.Y.4
Chew, E.5
Schnapp, M.6
Lee, C.W.7
Ye, C.8
Ping, J.L.9
Mulawadi, F.10
-
18
-
-
84939246295
-
CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function
-
Guo, Y., Xu, Q., Canzio, D., Shou, J., Li, J., Gorkin, D.U., Jung, I., Wu, H., Zhai, Y., Tang, Y. et al. (2015) CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function. Cell, 162, 900-910.
-
(2015)
Cell
, vol.162
, pp. 900-910
-
-
Guo, Y.1
Xu, Q.2
Canzio, D.3
Shou, J.4
Li, J.5
Gorkin, D.U.6
Jung, I.7
Wu, H.8
Zhai, Y.9
Tang, Y.10
-
19
-
-
84982859388
-
Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions
-
Lu, Y., Shan, G., Xue, J., Chen, C. and Zhang, C. (2016) Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions. Nucleic Acids Res., 44, 6200-6212.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 6200-6212
-
-
Lu, Y.1
Shan, G.2
Xue, J.3
Chen, C.4
Zhang, C.5
-
20
-
-
84865712382
-
Annotation of functional variation in personal genomes using RegulomeDB
-
Boyle, A.P., Hong, E.L., Hariharan, M., Cheng, Y., Schaub, M.A., Kasowski, M., Karczewski, K.J., Park, J., Hitz, B.C., Weng, S. et al. (2012) Annotation of functional variation in personal genomes using RegulomeDB. Genome Res., 22, 1790-1797.
-
(2012)
Genome Res.
, vol.22
, pp. 1790-1797
-
-
Boyle, A.P.1
Hong, E.L.2
Hariharan, M.3
Cheng, Y.4
Schaub, M.A.5
Kasowski, M.6
Karczewski, K.J.7
Park, J.8
Hitz, B.C.9
Weng, S.10
-
21
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
Ernst, J. and Kellis, M. (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods, 9, 215-216.
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
22
-
-
84976873328
-
HaploReg v4: Systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease
-
Ward, L.D. and Kellis, M. (2016) HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease. Nucleic Acids Res., 44, D877-D881.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D877-D881
-
-
Ward, L.D.1
Kellis, M.2
-
23
-
-
84858779229
-
HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
-
Ward, L.D. and Kellis, M. (2012) HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res., 40, D930-D934.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D930-D934
-
-
Ward, L.D.1
Kellis, M.2
-
24
-
-
84883583576
-
GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications
-
Li, M.J., Wang, L.Y., Xia, Z., Sham, P.C. and Wang, J. (2013) GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications. Nucleic Acids Res., 41, W150-W158.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W150-W158
-
-
Li, M.J.1
Wang, L.Y.2
Xia, Z.3
Sham, P.C.4
Wang, J.5
-
25
-
-
84964696143
-
FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer
-
Fu, Y., Liu, Z., Lou, S., Bedford, J., Mu, X.J., Yip, K.Y., Khurana, E. and Gerstein, M. (2014) FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer. Genome Biol., 15, 480.
-
(2014)
Genome Biol.
, vol.15
, pp. 480
-
-
Fu, Y.1
Liu, Z.2
Lou, S.3
Bedford, J.4
Mu, X.J.5
Yip, K.Y.6
Khurana, E.7
Gerstein, M.8
-
26
-
-
84970965504
-
CCSI: A database providing chromatin-chromatin spatial interaction information
-
Xie, X., Ma, W., Songyang, Z., Luo, Z., Huang, J., Dai, Z. and Xiong, Y. (2016) CCSI: a database providing chromatin-chromatin spatial interaction information. Database, 2016, bav124.
-
(2016)
Database
, vol.2016
, pp. bav124
-
-
Xie, X.1
Ma, W.2
Songyang, Z.3
Luo, Z.4
Huang, J.5
Dai, Z.6
Xiong, Y.7
-
27
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A., Handsaker, R.E., Lunter, G., Marth, G.T., Sherry, S.T. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158.
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
DePristo, M.A.6
Handsaker, R.E.7
Lunter, G.8
Marth, G.T.9
Sherry, S.T.10
-
28
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M.A., Bender, D., Maller, J., Sklar, P., de Bakker, P.I., Daly, M.J. et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
Bender, D.6
Maller, J.7
Sklar, P.8
De Bakker, P.I.9
Daly, M.J.10
-
29
-
-
84976878634
-
The UCSC genome browser database: 2016 update
-
Speir, M.L., Zweig, A.S., Rosenbloom, K.R., Raney, B.J., Paten, B., Nejad, P., Lee, B.T., Learned, K., Karolchik, D., Hinrichs, A.S. et al. (2016) The UCSC Genome Browser database: 2016 update. Nucleic Acids Res., 44, D717-D725.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D717-D725
-
-
Speir, M.L.1
Zweig, A.S.2
Rosenbloom, K.R.3
Raney, B.J.4
Paten, B.5
Nejad, P.6
Lee, B.T.7
Learned, K.8
Karolchik, D.9
Hinrichs, A.S.10
-
30
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
31
-
-
84948403758
-
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
-
Sanborn, A.L., Rao, S.S., Huang, S.C., Durand, N.C., Huntley, M.H., Jewett, A.I., Bochkov, I.D., Chinnappan, D., Cutkosky, A., Li, J. et al. (2015) Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proc. Natl. Acad. Sci. U.S.A., 112, E6456-E6465.
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E6456-E6465
-
-
Sanborn, A.L.1
Rao, S.S.2
Huang, S.C.3
Durand, N.C.4
Huntley, M.H.5
Jewett, A.I.6
Bochkov, I.D.7
Chinnappan, D.8
Cutkosky, A.9
Li, J.10
-
32
-
-
84973305064
-
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
-
Taberlay, P.C., Achinger-Kawecka, J., Lun, A.T., Buske, F.A., Sabir, K., Gould, C.M., Zotenko, E., Bert, S.A., Giles, K.A., Bauer, D.C. et al. (2016) Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations. Genome Res., 26, 719-731.
-
(2016)
Genome Res.
, vol.26
, pp. 719-731
-
-
Taberlay, P.C.1
Achinger-Kawecka, J.2
Lun, A.T.3
Buske, F.A.4
Sabir, K.5
Gould, C.M.6
Zotenko, E.7
Bert, S.A.8
Giles, K.A.9
Bauer, D.C.10
-
33
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H. and Glass, C.K. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576-589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
34
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
Matys, V., Fricke, E., Geffers, R., Gossling, E., Haubrock, M., Hehl, R., Hornischer, K., Karas, D., Kel, A.E., Kel-Margoulis, O.V. et al. (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gossling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
-
35
-
-
84976884426
-
JASPAR 2016: A major expansion and update of the open-access database of transcription factor binding profiles
-
Mathelier, A., Fornes, O., Arenillas, D.J., Chen, C.Y., Denay, G., Lee, J., Shi, W., Shyr, C., Tan, G., Worsley-Hunt, R. et al. (2016) JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res., 44, D110-D115.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D110-D115
-
-
Mathelier, A.1
Fornes, O.2
Arenillas, D.J.3
Chen, C.Y.4
Denay, G.5
Lee, J.6
Shi, W.7
Shyr, C.8
Tan, G.9
Worsley-Hunt, R.10
-
36
-
-
33746078864
-
Large scale matching for position weight matrices
-
Liefooghe, A., Touzet, H. and Varre, J.S. (2006) Large scale matching for position weight matrices. Lect. Notes Comput. Sci., 4009, 401-412.
-
(2006)
Lect. Notes Comput. Sci.
, vol.4009
, pp. 401-412
-
-
Liefooghe, A.1
Touzet, H.2
Varre, J.S.3
-
37
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A.S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S. et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res., 15, 1034-1050.
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
38
-
-
84878682420
-
The genotype-tissue expression (GTEx) project
-
Consortium, G.T. (2013) The genotype-tissue expression (GTEx) project. Nat. Genet., 45, 580-585.
-
(2013)
Nat. Genet.
, vol.45
, pp. 580-585
-
-
Consortium, G.T.1
-
39
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J. and Marra, M.A. (2009) Circos: an information aesthetic for comparative genomics. Genome Res., 19, 1639-1645.
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
40
-
-
77955499945
-
From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
-
Musunuru, K., Strong, A., Frank-Kamenetsky, M., Lee, N.E., Ahfeldt, T., Sachs, K.V., Li, X., Li, H., Kuperwasser, N., Ruda, V.M. et al. (2010) From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus. Nature, 466, 714-719.
-
(2010)
Nature
, vol.466
, pp. 714-719
-
-
Musunuru, K.1
Strong, A.2
Frank-Kamenetsky, M.3
Lee, N.E.4
Ahfeldt, T.5
Sachs, K.V.6
Li, X.7
Li, H.8
Kuperwasser, N.9
Ruda, V.M.10
-
41
-
-
84940023884
-
Predicting the spatial organization of chromosomes using epigenetic data
-
Mourad, R. and Cuvier, O. (2015) Predicting the spatial organization of chromosomes using epigenetic data. Genome Biol., 16, 182.
-
(2015)
Genome Biol.
, vol.16
, pp. 182
-
-
Mourad, R.1
Cuvier, O.2
-
42
-
-
84960877099
-
Constructing 3D interaction maps from 1D epigenomes
-
Zhu, Y., Chen, Z., Zhang, K., Wang, M., Medovoy, D., Whitaker, J.W., Ding, B., Li, N., Zheng, L. and Wang, W. (2016) Constructing 3D interaction maps from 1D epigenomes. Nat. Commun., 7, 10812.
-
(2016)
Nat. Commun.
, vol.7
, pp. 10812
-
-
Zhu, Y.1
Chen, Z.2
Zhang, K.3
Wang, M.4
Medovoy, D.5
Whitaker, J.W.6
Ding, B.7
Li, N.8
Zheng, L.9
Wang, W.10
-
43
-
-
84976444277
-
De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles
-
Chen, Y., Wang, Y., Xuan, Z., Chen, M. and Zhang, M.Q. (2016) De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles. Nucleic Acids Res., 44, e106.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. e106
-
-
Chen, Y.1
Wang, Y.2
Xuan, Z.3
Chen, M.4
Zhang, M.Q.5
-
44
-
-
84940090292
-
Predicting chromatin organization using histone marks
-
Huang, J., Marco, E., Pinello, L. and Yuan, G.C. (2015) Predicting chromatin organization using histone marks. Genome Biol., 16, 162.
-
(2015)
Genome Biol.
, vol.16
, pp. 162
-
-
Huang, J.1
Marco, E.2
Pinello, L.3
Yuan, G.C.4
|