-
1
-
-
32144432437
-
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J., Schwede, T., The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22 (2006), 195–201, 10.1093/bioinformatics/bti770.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
2
-
-
84879781847
-
Detection of site-specific positive Darwinian selection on pandemic influenza A/H1N1 virus genome: integrative approaches
-
Arunachalam, R., Detection of site-specific positive Darwinian selection on pandemic influenza A/H1N1 virus genome: integrative approaches. Genetica 141 (2013), 143–155, 10.1007/s10709-013-9713-x.
-
(2013)
Genetica
, vol.141
, pp. 143-155
-
-
Arunachalam, R.1
-
3
-
-
84918822999
-
Adaptive evolution of a novel avian-origin influenza A/H7N9 virus
-
Arunachalam, R., Adaptive evolution of a novel avian-origin influenza A/H7N9 virus. Genomics 104 (2014), 545–553, 10.1016/j.ygeno.2014.10.012.
-
(2014)
Genomics
, vol.104
, pp. 545-553
-
-
Arunachalam, R.1
-
4
-
-
84999293327
-
Complete coding sequence of zika virus from a French polynesia outbreak in 2013
-
pii:e00500-14
-
Baronti, C., Piorkowski, G., Charrel, R.N., Boubis, L., Leparc-Goffart, I., de Lamballerie, X., Complete coding sequence of zika virus from a French polynesia outbreak in 2013. Genome Announc., 2(3), 2014 pii:e00500-14 10.1128/genomeA.00500-14.
-
(2014)
Genome Announc.
, vol.2
, Issue.3
-
-
Baronti, C.1
Piorkowski, G.2
Charrel, R.N.3
Boubis, L.4
Leparc-Goffart, I.5
de Lamballerie, X.6
-
5
-
-
20744441654
-
Envelope protein glycosylation status influences mouse neuroinvasion phenotype of genetic lineage 1 West Nile virus strains
-
Beasley, D.W., Whiteman, M.C., Zhang, S., Huang, C.Y., Scneider, B.S., Smith, D.R., Gromowski, G.D., Higgs, S., Kinney, R.M., Barrett, A.D., Envelope protein glycosylation status influences mouse neuroinvasion phenotype of genetic lineage 1 West Nile virus strains. J. Virol. 79 (2005), 8339–8347, 10.1128/JVI.79.13.8339-8347.2005.
-
(2005)
J. Virol.
, vol.79
, pp. 8339-8347
-
-
Beasley, D.W.1
Whiteman, M.C.2
Zhang, S.3
Huang, C.Y.4
Scneider, B.S.5
Smith, D.R.6
Gromowski, G.D.7
Higgs, S.8
Kinney, R.M.9
Barrett, A.D.10
-
6
-
-
79551613290
-
Toward the estimation of the absolute quality of individual protein structure models
-
Benkert, P., Biasini, M., Schwede, T., Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 27 (2011), 343–350, 10.1093/bioinformatics/btq662.
-
(2011)
Bioinformatics
, vol.27
, pp. 343-350
-
-
Benkert, P.1
Biasini, M.2
Schwede, T.3
-
7
-
-
84904815625
-
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
-
Biasini, M., Bienert, S., Waterhouse, A., Arnold, K., Studer, G., Schmidt, T., Kiefer, F., Cassarino, T.G., Bertoni, M., Bordoli, L., Schwede, T., SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42:W1 (2014), W252–W258, 10.1093/nar/gku340.
-
(2014)
Nucleic Acids Res.
, vol.42
, Issue.W1
, pp. W252-W258
-
-
Biasini, M.1
Bienert, S.2
Waterhouse, A.3
Arnold, K.4
Studer, G.5
Schmidt, T.6
Kiefer, F.7
Cassarino, T.G.8
Bertoni, M.9
Bordoli, L.10
Schwede, T.11
-
8
-
-
85005989501
-
Zika virus infection in pregnant women in Rio de Janeiro - preliminary report
-
Brasil, P., Pereira, J.P., Raja Gabaglia, C., Damasceno, L., Wakimoto, M., Ribeiro Nogueira, R.M., Carvalho de Sequeira, P., Machado Siqueira, A., Abreu de Carvalho, L.M., Cotrim da Cunha, D., Calvet, G.A., Neves, E.S., Moreira, M.E., Rodrigues Baião, A.E., Nassar de Carvalho, P.R., Janzen, C., Valderramos, S.G., Cherry, J.D., Bispo de Filippis, A.M., Nielsen-Saines, K., Zika virus infection in pregnant women in Rio de Janeiro - preliminary report. N. Engl. J. Med. 375 (2016), 2321–2334, 10.1056/NEJMoa1602412.
-
(2016)
N. Engl. J. Med.
, vol.375
, pp. 2321-2334
-
-
Brasil, P.1
Pereira, J.P.2
Raja Gabaglia, C.3
Damasceno, L.4
Wakimoto, M.5
Ribeiro Nogueira, R.M.6
Carvalho de Sequeira, P.7
Machado Siqueira, A.8
Abreu de Carvalho, L.M.9
Cotrim da Cunha, D.10
Calvet, G.A.11
Neves, E.S.12
Moreira, M.E.13
Rodrigues Baião, A.E.14
Nassar de Carvalho, P.R.15
Janzen, C.16
Valderramos, S.G.17
Cherry, J.D.18
Bispo de Filippis, A.M.19
Nielsen-Saines, K.20
more..
-
9
-
-
84887277467
-
Properties of MHC class I presented peptides that enhance immunogenicity
-
Calis, J.J.A., Maybeno, M., Greenbaum, J.A., Weiskopf, D., De Silva, A.D., Sette, A., Kesmir, C., Peters, B., Properties of MHC class I presented peptides that enhance immunogenicity. PLoS Comput. Biol., 9(10), 2013, e1003266, 10.1371/journal.pcbi.1003266.
-
(2013)
PLoS Comput. Biol.
, vol.9
, Issue.10
-
-
Calis, J.J.A.1
Maybeno, M.2
Greenbaum, J.A.3
Weiskopf, D.4
De Silva, A.D.5
Sette, A.6
Kesmir, C.7
Peters, B.8
-
10
-
-
77952841173
-
Human T cell epitopes of mycobacterium tuberculosis are evolutionarily hyperconserved
-
Comas, I., Chakravarthi, J., Small, P.M., Galagan, J., Niemann, S., Kremer, K., Ernst, J.D., Gagneux, S., Human T cell epitopes of mycobacterium tuberculosis are evolutionarily hyperconserved. Nat. Genet. 42 (2010), 498–503, 10.1038/ng.590.
-
(2010)
Nat. Genet.
, vol.42
, pp. 498-503
-
-
Comas, I.1
Chakravarthi, J.2
Small, P.M.3
Galagan, J.4
Niemann, S.5
Kremer, K.6
Ernst, J.D.7
Gagneux, S.8
-
11
-
-
79960999556
-
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
-
Dahirel, V., Shekhar, K., Pereyra, F., Miura, T., Artyomov, M., Talsania, S., Allen, T.M., Altfeld, M., Carrington, M., Irvine, D.J., Walker, B.D., Chakraborty, A.K., Coordinate linkage of HIV evolution reveals regions of immunological vulnerability. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 11530–11535, 10.1073/pnas.1105315108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11530-11535
-
-
Dahirel, V.1
Shekhar, K.2
Pereyra, F.3
Miura, T.4
Artyomov, M.5
Talsania, S.6
Allen, T.M.7
Altfeld, M.8
Carrington, M.9
Irvine, D.J.10
Walker, B.D.11
Chakraborty, A.K.12
-
12
-
-
77957233168
-
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
-
Delport, W., Poon, A.F., Frost, S.D.W., Pond, S.L.K., Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26 (2010), 2455–2457, 10.1093/bioinformatics/btq429.
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.2
Frost, S.D.W.3
Pond, S.L.K.4
-
13
-
-
49749225192
-
Zika virus. I. Isolations and serological specificity
-
Dick, G.W.A., Kitchen, S.F., Haddow, A.J., Zika virus. I. Isolations and serological specificity. Trans. R. Soc. Trop. Med. Hyg. 46 (1952), 509–520 http://dx.doi.org/10.1016/0035-9203(52)90042-4.
-
(1952)
Trans. R. Soc. Trop. Med. Hyg.
, vol.46
, pp. 509-520
-
-
Dick, G.W.A.1
Kitchen, S.F.2
Haddow, A.J.3
-
14
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar, R.C., MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinf., 5, 2004, 113, 10.1186/1471-2105-5-113.
-
(2004)
BMC Bioinf.
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
15
-
-
84954375368
-
Zika virus genome from the Americas
-
Enfissi, A., Codrington, J., Roosblad, J., Kazanji, M., Rousset, D., Zika virus genome from the Americas. Lancet 387 (2016), 227–228 http://dx.doi.org/10.1016/S0140-6736(16)00003-9.
-
(2016)
Lancet
, vol.387
, pp. 227-228
-
-
Enfissi, A.1
Codrington, J.2
Roosblad, J.3
Kazanji, M.4
Rousset, D.5
-
16
-
-
0034646996
-
The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies
-
Farci, P., Shimoda, A., Coiana, A., Diaz, G., Peddis, G., Melpolder, J.C., Strazzera, A., Chien, D.Y., Munoz, S.J., Balestrieri, A., Purcell, R.H., Alter, H.J., The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies. Science 288 (2000), 339–344, 10.1126/science.288.5464.339.
-
(2000)
Science
, vol.288
, pp. 339-344
-
-
Farci, P.1
Shimoda, A.2
Coiana, A.3
Diaz, G.4
Peddis, G.5
Melpolder, J.C.6
Strazzera, A.7
Chien, D.Y.8
Munoz, S.J.9
Balestrieri, A.10
Purcell, R.H.11
Alter, H.J.12
-
17
-
-
84961653991
-
Zika virus in the Americas: early epidemiological and genetic findings
-
Faria, N.R., Azevedo Rdo, S., Kraemer, M.U., Souza, R., Cunha, M.S., Hill, S.C., Thézé, J., Bonsall, M.B., Bowden, T.A., Rissanen, I., Rocco, I.M., Nogueira, J.S., Maeda, A.Y., Vasami, F.G., Macedo, F.L., Suzuki, A., Rodrigues, S.G., Cruz, A.C., Nunes, B.T., Medeiros, D.B., Rodrigues, D.S., Nunes Queiroz, A.L., da Silva, E.V., Henriques, D.F., Travassos da Rosa, E.S., de Oliveira, C.S., Martins, L.C., Vasconcelos, H.B., Casseb, L.M., Simith Dde, B., Messina, J.P., Abade, L., Lourenço, J., Carlos Junior Alcantara, L., de Lima, M.M., Giovanetti, M., Hay, S.I., de Oliveira, R.S., Lemos Pda, S., de Oliveira, L.F., de Lima, C.P., da Silva, S.P., de Vasconcelos, J.M., Franco, L., Cardoso, J.F., Vianez-Júnior, J.L., Mir, D., Bello, G., Delatorre, E., Khan, K., Creatore, M., Coelho, G.E., de Oliveira, W.K., Tesh, R., Pybus, O.G., Nunes, M.R., Vasconcelos, P.F., Zika virus in the Americas: early epidemiological and genetic findings. Science 352 (2016), 345–349, 10.1126/science.aaf5036.
-
(2016)
Science
, vol.352
, pp. 345-349
-
-
Faria, N.R.1
Azevedo Rdo, S.2
Kraemer, M.U.3
Souza, R.4
Cunha, M.S.5
Hill, S.C.6
Thézé, J.7
Bonsall, M.B.8
Bowden, T.A.9
Rissanen, I.10
Rocco, I.M.11
Nogueira, J.S.12
Maeda, A.Y.13
Vasami, F.G.14
Macedo, F.L.15
Suzuki, A.16
Rodrigues, S.G.17
Cruz, A.C.18
Nunes, B.T.19
Medeiros, D.B.20
Rodrigues, D.S.21
Nunes Queiroz, A.L.22
da Silva, E.V.23
Henriques, D.F.24
Travassos da Rosa, E.S.25
de Oliveira, C.S.26
Martins, L.C.27
Vasconcelos, H.B.28
Casseb, L.M.29
Simith Dde, B.30
Messina, J.P.31
Abade, L.32
Lourenço, J.33
Carlos Junior Alcantara, L.34
de Lima, M.M.35
Giovanetti, M.36
Hay, S.I.37
de Oliveira, R.S.38
Lemos Pda, S.39
de Oliveira, L.F.40
de Lima, C.P.41
da Silva, S.P.42
de Vasconcelos, J.M.43
Franco, L.44
Cardoso, J.F.45
Vianez-Júnior, J.L.46
Mir, D.47
Bello, G.48
Delatorre, E.49
Khan, K.50
Creatore, M.51
Coelho, G.E.52
de Oliveira, W.K.53
Tesh, R.54
Pybus, O.G.55
Nunes, M.R.56
Vasconcelos, P.F.57
more..
-
18
-
-
84893713454
-
Molecular evolution of Zika virus during its emergence in the 20(th) century
-
Faye, O., Freire, C.C.M., Iamarino, A., Faye, O., de Oliveira, J.V.C., Diallo, M., Zanotto, P.M.A., Sall, A.A., Molecular evolution of Zika virus during its emergence in the 20(th) century. PLoS Negl. Trop. Dis., 8, 2014, e2636, 10.1371/journal.pntd.0002636.
-
(2014)
PLoS Negl. Trop. Dis.
, vol.8
-
-
Faye, O.1
Freire, C.C.M.2
Iamarino, A.3
Faye, O.4
de Oliveira, J.V.C.5
Diallo, M.6
Zanotto, P.M.A.7
Sall, A.A.8
-
19
-
-
79955770476
-
Probable non-vector-borne transmission of Zika virus, Colorado, USA
-
Foy, B.D., Kobylinski, K.C., Chilson Foy, J.L., Blitvich, B.J., Travassos da Rosa, A., Haddow, A.D., Lanciotti, R.S., Tesh, R.B., Probable non-vector-borne transmission of Zika virus, Colorado, USA. Emerg. Infect. Dis. 17 (2011), 880–882, 10.3201/eid1705.101939.
-
(2011)
Emerg. Infect. Dis.
, vol.17
, pp. 880-882
-
-
Foy, B.D.1
Kobylinski, K.C.2
Chilson Foy, J.L.3
Blitvich, B.J.4
Travassos da Rosa, A.5
Haddow, A.D.6
Lanciotti, R.S.7
Tesh, R.B.8
-
20
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
-
Guex, N., Peitsch, M.C., SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18 (1997), 2714–2723, 10.1002/elps.1150181505.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
21
-
-
84857819894
-
Genetic characterization of Zika virus strains: geographic expansion of the Asian lineage
-
Haddow, A.D., Schuh, A.J., Yasuda, C.Y., Kasper, M.R., Heang, V., Huy, R., Guzman, H., Tesh, R.B., Weaver, S.C., Genetic characterization of Zika virus strains: geographic expansion of the Asian lineage. PLoS Negl. Trop. Dis., 6, 2012, e1477, 10.1371/journal.pntd.0001477.
-
(2012)
PLoS Negl. Trop. Dis.
, vol.6
-
-
Haddow, A.D.1
Schuh, A.J.2
Yasuda, C.Y.3
Kasper, M.R.4
Heang, V.5
Huy, R.6
Guzman, H.7
Tesh, R.B.8
Weaver, S.C.9
-
22
-
-
70249130933
-
Zika virus outside Africa
-
Hayes, E.B., Zika virus outside Africa. Emerg. Infect. Dis. 15 (2009), 1347–1350, 10.3201/eid1509.090442.
-
(2009)
Emerg. Infect. Dis.
, vol.15
, pp. 1347-1350
-
-
Hayes, E.B.1
-
23
-
-
84975860039
-
Nucleotide composition of the Zika virus RNA genome and its codon usage
-
van Hemert, F., Berkhout, B., Nucleotide composition of the Zika virus RNA genome and its codon usage. Virol. J., 13, 2016, 95, 10.1186/s12985-016-0551-1.
-
(2016)
Virol. J.
, vol.13
, pp. 95
-
-
van Hemert, F.1
Berkhout, B.2
-
24
-
-
84978174631
-
Structure of the NS3 helicase from Zika virus
-
Jain, R., Coloma, J., Garcia-Sastre, A., Aggarwal, A.K., Structure of the NS3 helicase from Zika virus. Nat. Struct. Mol. Biol. 23 (2016), 752–754, 10.1038/nsmb.3258.
-
(2016)
Nat. Struct. Mol. Biol.
, vol.23
, pp. 752-754
-
-
Jain, R.1
Coloma, J.2
Garcia-Sastre, A.3
Aggarwal, A.K.4
-
25
-
-
63949087100
-
Adaptation of HIV-1 to human leukocyte antigen class I
-
Kawashima, Y., Pfafferott, K., Frater, J., Matthews, P., Payne, R., Addo, M., Gatanaga, H., Fujiwara, M., Hachiya, A., Koizumi, H., Kuse, N., Oka, S., Duda, A., Prendergast, A., Crawford, H., Leslie, A., Brumme, Z., Brumme, C., Allen, T., Brander, C., Kaslow, R., Tang, J., Hunter, E., Allen, S., Mulenga, J., Branch, S., Roach, T., John, M., Mallal, S., Ogwu, A., Shapiro, R., Prado, J.G., Fidler, S., Weber, J., Pybus, O.G., Klenerman, P., Ndung'u, T., Phillips, R., Heckerman, D., Harrigan, P.R., Walker, B.D., Takiguchi, M., Goulder, P., Adaptation of HIV-1 to human leukocyte antigen class I. Nature 458 (2009), 641–645, 10.1038/nature07746.
-
(2009)
Nature
, vol.458
, pp. 641-645
-
-
Kawashima, Y.1
Pfafferott, K.2
Frater, J.3
Matthews, P.4
Payne, R.5
Addo, M.6
Gatanaga, H.7
Fujiwara, M.8
Hachiya, A.9
Koizumi, H.10
Kuse, N.11
Oka, S.12
Duda, A.13
Prendergast, A.14
Crawford, H.15
Leslie, A.16
Brumme, Z.17
Brumme, C.18
Allen, T.19
Brander, C.20
Kaslow, R.21
Tang, J.22
Hunter, E.23
Allen, S.24
Mulenga, J.25
Branch, S.26
Roach, T.27
John, M.28
Mallal, S.29
Ogwu, A.30
Shapiro, R.31
Prado, J.G.32
Fidler, S.33
Weber, J.34
Pybus, O.G.35
Klenerman, P.36
Ndung'u, T.37
Phillips, R.38
Heckerman, D.39
Harrigan, P.R.40
Walker, B.D.41
Takiguchi, M.42
Goulder, P.43
more..
-
26
-
-
18344387519
-
Structure of dengue virus: implications for flavivirus organization, maturation, and fusion
-
Kuhn, R.J., Zhang, W., Rossmann, M.G., Pletnev, S.V., Corver, J., Lenches, E., Jones, C.T., Mukhopadhyay, S., Chipman, P.R., Strauss, E.G., Baker, T.S., Strauss, J.H., Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell 108 (2002), 717–725, 10.1016/S0092-8674(02)00660-8.
-
(2002)
Cell
, vol.108
, pp. 717-725
-
-
Kuhn, R.J.1
Zhang, W.2
Rossmann, M.G.3
Pletnev, S.V.4
Corver, J.5
Lenches, E.6
Jones, C.T.7
Mukhopadhyay, S.8
Chipman, P.R.9
Strauss, E.G.10
Baker, T.S.11
Strauss, J.H.12
-
27
-
-
33947379655
-
Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses
-
Kuno, G., Chang, G.J., Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses. Arch. Virol. 152 (2007), 687–696, 10.1007/s00705-006-0903-z.
-
(2007)
Arch. Virol.
, vol.152
, pp. 687-696
-
-
Kuno, G.1
Chang, G.J.2
-
28
-
-
48749093929
-
Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007
-
Lanciotti, R.S., Kosoy, O.L., Laven, J.J., Velez, J.O., Lambert, A.J., Johnson, A.J., Stanfield, S.M., Duffy, M.R., Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg. Infect. Dis. 14 (2008), 1232–1239, 10.3201/eid1408.080287.
-
(2008)
Emerg. Infect. Dis.
, vol.14
, pp. 1232-1239
-
-
Lanciotti, R.S.1
Kosoy, O.L.2
Laven, J.J.3
Velez, J.O.4
Lambert, A.J.5
Johnson, A.J.6
Stanfield, S.M.7
Duffy, M.R.8
-
29
-
-
84963812843
-
Phylogeny of Zika virus in Western Hemisphere, 2015
-
Lanciotti, R.S., Lambert, A.J., Holodniy, M., Saavedra, S., Signor Ldel, C., Phylogeny of Zika virus in Western Hemisphere, 2015. Emerg. Infect. Dis. 22 (2016), 933–935, 10.3201/eid2205.160065.
-
(2016)
Emerg. Infect. Dis.
, vol.22
, pp. 933-935
-
-
Lanciotti, R.S.1
Lambert, A.J.2
Holodniy, M.3
Saavedra, S.4
Signor Ldel, C.5
-
30
-
-
84962438993
-
A mouse model of Zika virus pathogenesis
-
Lazear, H.M., Govero, J., Smith, A.M., Platt, D.J., Femandez, E., Miner, J.J., Diamond, M.S., A mouse model of Zika virus pathogenesis. Cell Host Microbe 19 (2016), 1–11 http://dx.doi.org/10.1016/j.chom.2016.03.010.
-
(2016)
Cell Host Microbe
, vol.19
, pp. 1-11
-
-
Lazear, H.M.1
Govero, J.2
Smith, A.M.3
Platt, D.J.4
Femandez, E.5
Miner, J.J.6
Diamond, M.S.7
-
31
-
-
85015827398
-
The evolution and emergence of RNA viruses
-
Mahy, B.W.J., The evolution and emergence of RNA viruses. Emerg. Infect. Dis., 16(5), 2010, 899, 10.3201/eid1605.100164.
-
(2010)
Emerg. Infect. Dis.
, vol.16
, Issue.5
, pp. 899
-
-
Mahy, B.W.J.1
-
32
-
-
0014508499
-
Isolation of Zika virus from Aedes aegypti mosquitoes in Malaysia
-
Marchette, N.J., Garcia, R., Rudnick, A., Isolation of Zika virus from Aedes aegypti mosquitoes in Malaysia. Am.J.Trop. Med. Hyg. 18:3 (1969), 411–415 https://doi.org/10.4269/ajtmh.1969.18.411.
-
(1969)
Am.J.Trop. Med. Hyg.
, vol.18
, Issue.3
, pp. 411-415
-
-
Marchette, N.J.1
Garcia, R.2
Rudnick, A.3
-
33
-
-
84959283609
-
Zika virus associated with microcephaly
-
Mlakar, J., Korva, M., Tul, N., Popović, M., Poljšak-Prijatelj, M., Mraz, J., Kolenc, M., Rus, K.R., Vipotnik, T.S., Vodušek, V.F., Vizjak, A., Pižem, J., Petrovec, M., Županc, T.A., Zika virus associated with microcephaly. N. Engl. J. Med. 374 (2016), 951–958, 10.1056/NEJMoa1600651.
-
(2016)
N. Engl. J. Med.
, vol.374
, pp. 951-958
-
-
Mlakar, J.1
Korva, M.2
Tul, N.3
Popović, M.4
Poljšak-Prijatelj, M.5
Mraz, J.6
Kolenc, M.7
Rus, K.R.8
Vipotnik, T.S.9
Vodušek, V.F.10
Vizjak, A.11
Pižem, J.12
Petrovec, M.13
Županc, T.A.14
-
34
-
-
0141993711
-
Structure of West Nile virus
-
Mukhopadhyay, S., Kim, B.S., Chipman, P.R., Rossmann, M.G., Kuhn, R.J., Structure of West Nile virus. Science, 302, 2003, 248, 10.1126/science.1089316.
-
(2003)
Science
, vol.302
, pp. 248
-
-
Mukhopadhyay, S.1
Kim, B.S.2
Chipman, P.R.3
Rossmann, M.G.4
Kuhn, R.J.5
-
35
-
-
84876522258
-
FUBAR: a fast, unconstrained Bayesian AppRoximation for inferring selection
-
Murrell, B., Moola, S., Mabona, A., Weighill, T., Sheward, D., Pond, S.L.K., Scheffler, K., FUBAR: a fast, unconstrained Bayesian AppRoximation for inferring selection. Mol. Biol. Evol. 30 (2013), 1196–1205, 10.1093/molbev/mst030.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1196-1205
-
-
Murrell, B.1
Moola, S.2
Mabona, A.3
Weighill, T.4
Sheward, D.5
Pond, S.L.K.6
Scheffler, K.7
-
36
-
-
84913607046
-
Rapid spread of emerging Zika virus in the Pacific area
-
Musso, D., Nilles, E.J., Cao-Lormeau, V.M., Rapid spread of emerging Zika virus in the Pacific area. Clin. Microbiol. Infect. 20 (2014), O595–O596, 10.1111/1469-0691.12707.
-
(2014)
Clin. Microbiol. Infect.
, vol.20
, pp. O595-O596
-
-
Musso, D.1
Nilles, E.J.2
Cao-Lormeau, V.M.3
-
37
-
-
84981532068
-
Characterizing the Zika virus genome – a bioinformatics study
-
Nandy, A., Dey, S., Basak, S.C., Bielinska-Waz, D., Waz, P., Characterizing the Zika virus genome – a bioinformatics study. Curr. Comput. Aided Drug Des. 12 (2016), 87–97, 10.2174/1573409912666160401115812.
-
(2016)
Curr. Comput. Aided Drug Des.
, vol.12
, pp. 87-97
-
-
Nandy, A.1
Dey, S.2
Basak, S.C.3
Bielinska-Waz, D.4
Waz, P.5
-
38
-
-
84896890557
-
Zika virus infection complicated by Guillain-Barre syndrome - case report, French Polynesia, December 2013
-
pii20720
-
Oehler, E., Watrin, L., Larre, P., Leparc-Goffart, I., Lastere, S., Valour, F., Baudouin, L., Mallet, H., Musso, D., Ghawche, F., Zika virus infection complicated by Guillain-Barre syndrome - case report, French Polynesia, December 2013. Eurosurveillance, 19(9), 2014 pii20720 http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20720.
-
(2014)
Eurosurveillance
, vol.19
, Issue.9
-
-
Oehler, E.1
Watrin, L.2
Larre, P.3
Leparc-Goffart, I.4
Lastere, S.5
Valour, F.6
Baudouin, L.7
Mallet, H.8
Musso, D.9
Ghawche, F.10
-
39
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sited under selection
-
Pond, S.L.K., Frost, S.D.W., Not so different after all: a comparison of methods for detecting amino acid sited under selection. Mol. Biol. Evol. 22 (2005), 1208–1222 https://doi.org/10.1093/molbev/msi105.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Pond, S.L.K.1
Frost, S.D.W.2
-
40
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond, S.L.K., Frost, S.D.W., Muse, S.V., HyPhy: hypothesis testing using phylogenies. Bioinformatics 21 (2005), 676–679 https://doi.org/10.1093/bioinformatics/bti079.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.K.1
Frost, S.D.W.2
Muse, S.V.3
-
41
-
-
33745611774
-
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
-
Pond, S.L.K., Frost, S.D., Grossman, Z., Gravenor, M.B., Richman, D.D., Brown, A.J., Adaptation to different human populations by HIV-1 revealed by codon-based analyses. PLoS Comput. Biol., 2, 2006, e62 http://dx.doi.org/10.1371/journal.pcbi.0020062.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e62
-
-
Pond, S.L.K.1
Frost, S.D.2
Grossman, Z.3
Gravenor, M.B.4
Richman, D.D.5
Brown, A.J.6
-
42
-
-
80155187383
-
A random effects branch-site model for detecting episodic diversifying selection
-
Pond, S.L.K., Murrell, B., Fourment, M., Frost, S.D.W., Delport, W., Scheffler, K., A random effects branch-site model for detecting episodic diversifying selection. Mol. Biol. Evol. 28 (2011), 3033–3043 https://doi.org/10.1093/molbev/msr125.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 3033-3043
-
-
Pond, S.L.K.1
Murrell, B.2
Fourment, M.3
Frost, S.D.W.4
Delport, W.5
Scheffler, K.6
-
43
-
-
84901999754
-
Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design
-
Quadeer, A.A., Louie, R.H., Shekhar, K., Chakraborty, A.K., Hsing, I.M., McKay, M.R., Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design. J. Virol. 88 (2014), 7628–7644, 10.1128/JVI.03812-13.
-
(2014)
J. Virol.
, vol.88
, pp. 7628-7644
-
-
Quadeer, A.A.1
Louie, R.H.2
Shekhar, K.3
Chakraborty, A.K.4
Hsing, I.M.5
McKay, M.R.6
-
44
-
-
84959154288
-
Ebola virus evolves in human to minimize the detection by immune cells by accumulating adaptive mutations
-
Ramaiah, A., Arumugaswami, V., Ebola virus evolves in human to minimize the detection by immune cells by accumulating adaptive mutations. VirusDisease 27 (2016), 136–144, 10.1007/s13337-016-0305-0.
-
(2016)
VirusDisease
, vol.27
, pp. 136-144
-
-
Ramaiah, A.1
Arumugaswami, V.2
-
45
-
-
84860109324
-
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A., Huelsenbeck, J.P., MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61 (2012), 539–542, 10.1093/sysbio/sys029.
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
van der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
46
-
-
0001354740
-
TreeBASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
-
Sanderson, M.J., Donoghue, M.J., Piel, W., Eriksson, T., TreeBASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. Am. J. Bot., 81, 1994, 183, 10.2307/2445447.
-
(1994)
Am. J. Bot.
, vol.81
, pp. 183
-
-
Sanderson, M.J.1
Donoghue, M.J.2
Piel, W.3
Eriksson, T.4
-
47
-
-
23344432889
-
Epistasis and the adaptability of an RNA virus
-
Sanjuan, R., Cuevas, J.M., Moya, A., Elena, S.F., Epistasis and the adaptability of an RNA virus. Genetics 170 (2005), 1001–1008, 10.1534/genetics.105.040741.
-
(2005)
Genetics
, vol.170
, pp. 1001-1008
-
-
Sanjuan, R.1
Cuevas, J.M.2
Moya, A.3
Elena, S.F.4
-
48
-
-
84897046835
-
Genome analysis of pandemic and post-pandemic influenza A pH1N1 viruses isolated in Rio Grande do Sul, Brazil
-
Sant'Anna, F.H., Borges, L.G., Fallavena, P.R., Gregianini, T.S., Matias, F., Halpin, R.A., Wentworth, D., d'Azevedo, P.A., Veiga, A.B., Genome analysis of pandemic and post-pandemic influenza A pH1N1 viruses isolated in Rio Grande do Sul, Brazil. Arch. Virol. 159 (2014), 621–630, 10.1007/s00705-013-1855-8.
-
(2014)
Arch. Virol.
, vol.159
, pp. 621-630
-
-
Sant'Anna, F.H.1
Borges, L.G.2
Fallavena, P.R.3
Gregianini, T.S.4
Matias, F.5
Halpin, R.A.6
Wentworth, D.7
d'Azevedo, P.A.8
Veiga, A.B.9
-
49
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13 (2003), 2498–2504, 10.1101/gr.1239303.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
50
-
-
84962427374
-
The 3.8 Å resolution cryo-EM structure of Zika virus
-
Sirohi, D., Chen, Z., Sun, L., Klose, T., Pierson, T.C., Rossmann, M.G., Kuhn, R.J., The 3.8 Å resolution cryo-EM structure of Zika virus. Science, 2016, 10.1126/science.aaf5316.
-
(2016)
Science
-
-
Sirohi, D.1
Chen, Z.2
Sun, L.3
Klose, T.4
Pierson, T.C.5
Rossmann, M.G.6
Kuhn, R.J.7
-
51
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
Smith, D.J., Lapedes, A.S., de Jong, J.V., Bestebroer, T.M., Rimmelzwaan, G.F., Osterhaus, A.D.M.E., Fouchier, R.A.M., Mapping the antigenic and genetic evolution of influenza virus. Science 305 (2004), 371–376, 10.1126/science.1097211.
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
Lapedes, A.S.2
de Jong, J.V.3
Bestebroer, T.M.4
Rimmelzwaan, G.F.5
Osterhaus, A.D.M.E.6
Fouchier, R.A.M.7
-
52
-
-
1542395680
-
Negative selection on neutralization epitopes of poliovirus surface proteins: implications for prediction of candidate epitopes for immunization
-
Suzuki, Y., Negative selection on neutralization epitopes of poliovirus surface proteins: implications for prediction of candidate epitopes for immunization. Gene 328 (2004), 127–133 http://dx.doi.org/10.1016/j.gene.2003.11.020.
-
(2004)
Gene
, vol.328
, pp. 127-133
-
-
Suzuki, Y.1
-
53
-
-
84887015690
-
Estimation of the number of nucleotide substituions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura, K., Nei, M., Estimation of the number of nucleotide substituions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 11 (1993), 715–724 https://doi.org/10.1093/oxfordjournals.molbev.a040023.
-
(1993)
Mol. Biol. Evol.
, vol.11
, pp. 715-724
-
-
Tamura, K.1
Nei, M.2
-
54
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30 (2013), 2725–2729 https://doi.org/10.1093/molbev/mst197.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
55
-
-
84966702627
-
The crystal structure of Zika virus helicase: basis for antiviral drug design
-
Tian, H., Ji, X., Yang, X., Xie, W., Yang, K., Chen, C., Wu, C., Chi, H., Mu, Z., Wang, Z., Yang, H., The crystal structure of Zika virus helicase: basis for antiviral drug design. Protein Cell, 7, 2016, 450, 10.1007/s13238-016-0275-4.
-
(2016)
Protein Cell
, vol.7
, pp. 450
-
-
Tian, H.1
Ji, X.2
Yang, X.3
Xie, W.4
Yang, K.5
Chen, C.6
Wu, C.7
Chi, H.8
Mu, Z.9
Wang, Z.10
Yang, H.11
-
56
-
-
84957839161
-
Microcephaly in Brazil: how to interpret reported numbers?
-
Victora, C.G., Schuler-Faccini, L., Matijasevich, A., Ribeiro, E., Pessoa, A., Barros, F.C., Microcephaly in Brazil: how to interpret reported numbers?. Lancet 387 (2016), 621–624, 10.1016/S0140-6736(16)00273-7.
-
(2016)
Lancet
, vol.387
, pp. 621-624
-
-
Victora, C.G.1
Schuler-Faccini, L.2
Matijasevich, A.3
Ribeiro, E.4
Pessoa, A.5
Barros, F.C.6
-
57
-
-
84961217657
-
RNA Structure Duplications and Flavivirus Host Adaptation
-
Villordo, S.M., Carballeda, J.M., Filomatori, C.V., Gamarnik, A.V., RNA Structure Duplications and Flavivirus Host Adaptation. Trends Microbiol. 24 (2016), 270–283 http://dx.doi.org/10.1016/j.tim.2016.01.002.
-
(2016)
Trends Microbiol.
, vol.24
, pp. 270-283
-
-
Villordo, S.M.1
Carballeda, J.M.2
Filomatori, C.V.3
Gamarnik, A.V.4
-
58
-
-
84946076702
-
The immune epitope database (IEDB) 3.0
-
Vita, R., Overton, J.A., Greenbaum, J.A., Ponomarenko, J., Clark, J.D., Cantrell, J.R., Wheeler, D.K., Gabbard, J.L., Hix, D., Sette, A., Peters, B., The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43 (2014), D405–D412, 10.1093/nar/gku938.
-
(2014)
Nucleic Acids Res.
, vol.43
, pp. D405-D412
-
-
Vita, R.1
Overton, J.A.2
Greenbaum, J.A.3
Ponomarenko, J.4
Clark, J.D.5
Cantrell, J.R.6
Wheeler, D.K.7
Gabbard, J.L.8
Hix, D.9
Sette, A.10
Peters, B.11
-
59
-
-
42949139524
-
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
-
Wang, P., Sidney, J., Dow, C., Mothé, B., Sette, A., Peters, B., A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach. PLoS Comput. Biol., 4, 2008, e1000048, 10.1371/journal.pcbi.1000048.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Wang, P.1
Sidney, J.2
Dow, C.3
Mothé, B.4
Sette, A.5
Peters, B.6
-
60
-
-
84963668236
-
From mosquitos to humans: genetic evolution of Zika virus
-
Wang, L., Valderramos, S.G., Wu, A., Ouyang, S., Li, C., Brasil, P., Bonaldo, M., Coates, T., Nielsen-Saines, K., Jiang, T., Aliyari, R., Cheng, G., From mosquitos to humans: genetic evolution of Zika virus. Cell Host Microbe 19 (2016), 561–565, 10.1016/j.chom.2016.04.006.
-
(2016)
Cell Host Microbe
, vol.19
, pp. 561-565
-
-
Wang, L.1
Valderramos, S.G.2
Wu, A.3
Ouyang, S.4
Li, C.5
Brasil, P.6
Bonaldo, M.7
Coates, T.8
Nielsen-Saines, K.9
Jiang, T.10
Aliyari, R.11
Cheng, G.12
-
61
-
-
85014832394
-
Emergence of epidemic Zika virus transmission and congenital Zika syndrome: are recently evolved traits to blame?
-
pii:e02063-16
-
Weaver, S.C., Emergence of epidemic Zika virus transmission and congenital Zika syndrome: are recently evolved traits to blame?. MBio, 8(1), 2017 pii:e02063-16 10.1128/mBio.02063-16.
-
(2017)
MBio
, vol.8
, Issue.1
-
-
Weaver, S.C.1
-
62
-
-
84879388598
-
DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution
-
Xia, X., DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Mol. Biol. Evol. 30 (2013), 1720–1728, 10.1093/molbev/mst064.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1720-1728
-
-
Xia, X.1
-
63
-
-
84968832483
-
Genomic characterization and phylogenetic analysis of Zika virus circulating in the Americas
-
Ye, Q., Liu, Z.-Y., Han, J.-F., Jiang, T., Li, X.-F., Qin, C.-F., Genomic characterization and phylogenetic analysis of Zika virus circulating in the Americas. Infect. Genet. Evol. 43 (2016), 43–49, 10.1016/j.meegid.2016.05.004.
-
(2016)
Infect. Genet. Evol.
, vol.43
, pp. 43-49
-
-
Ye, Q.1
Liu, Z.-Y.2
Han, J.-F.3
Jiang, T.4
Li, X.-F.5
Qin, C.-F.6
-
64
-
-
84872048730
-
Cryo-EM structure of the mature dengue virus at 3.5-Å resolution
-
Zhang, X., Ge, P., Yu, X., Brannan, J.M., Bi, G., Zhang, Q., Schein, S., Zhou, Z.H., Cryo-EM structure of the mature dengue virus at 3.5-Å resolution. Nat. Struct. Mol. Biol. 20 (2013), 105–110, 10.1038/nsmb.2463.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 105-110
-
-
Zhang, X.1
Ge, P.2
Yu, X.3
Brannan, J.M.4
Bi, G.5
Zhang, Q.6
Schein, S.7
Zhou, Z.H.8
-
65
-
-
85013999926
-
Comparative genomic analysis of pre-epidemic and epidemic Zika virus strains for virological factors potentially associated with the rapidly expanding epidemic
-
Zhu, Z., Chan, J.F., Tee, K.M., Choi, G.K., Lau, S.K., Woo, P.C., Tse, H., Yuen, K.Y., Comparative genomic analysis of pre-epidemic and epidemic Zika virus strains for virological factors potentially associated with the rapidly expanding epidemic. Emerg. Microbes Infect., 5, 2016, e22, 10.1038/emi.2016.48.
-
(2016)
Emerg. Microbes Infect.
, vol.5
-
-
Zhu, Z.1
Chan, J.F.2
Tee, K.M.3
Choi, G.K.4
Lau, S.K.5
Woo, P.C.6
Tse, H.7
Yuen, K.Y.8
|