메뉴 건너뛰기




Volumn 108, Issue 28, 2011, Pages 11530-11535

Coordinate linkage of HIV evolution reveals regions of immunological vulnerability

Author keywords

Cytotoxic T lymphocyte response; Elite controllers; Random matrix theory

Indexed keywords

GAG PROTEIN; VIRUS ANTIGEN;

EID: 79960999556     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1105315108     Document Type: Article
Times cited : (172)

References (33)
  • 1
    • 44049108744 scopus 로고    scopus 로고
    • Toward an AIDS vaccine
    • DOI 10.1126/science.1152622
    • Walker BD, Burton DR (2008) Toward an AIDS vaccine. Science 320:760-764. (Pubitemid 351929619)
    • (2008) Science , vol.320 , Issue.5877 , pp. 760-764
    • Walker, B.D.1    Burton, D.R.2
  • 3
    • 79952107221 scopus 로고    scopus 로고
    • Contributions of humoral and cellular immunity to vaccine-induced protection in humans
    • Amanna IJ, Slifka MK (2011) Contributions of humoral and cellular immunity to vaccine-induced protection in humans. Virology 411:206-215.
    • (2011) Virology , vol.411 , pp. 206-215
    • Amanna, I.J.1    Slifka, M.K.2
  • 4
    • 76749115071 scopus 로고    scopus 로고
    • HIV-1 vaccine development after STEP
    • Barouch DH, Korber B (2010) HIV-1 vaccine development after STEP. Annu Rev Med 61:153-167.
    • (2010) Annu Rev Med , vol.61 , pp. 153-167
    • Barouch, D.H.1    Korber, B.2
  • 5
    • 61949216736 scopus 로고    scopus 로고
    • Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge
    • Hansen SG, et al. (2009) Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge. Nat Med 15:293-299.
    • (2009) Nat Med , vol.15 , pp. 293-299
    • Hansen, S.G.1
  • 7
    • 33749474469 scopus 로고    scopus 로고
    • Hitting HIV where it hurts: an alternative approach to HIV vaccine design
    • DOI 10.1016/j.it.2006.09.007, PII S1471490606002717
    • Altfeld M, Allen TM (2006) Hitting HIV where it hurts: An alternative approach to HIV vaccine design. Trends Immunol 27:504-510. (Pubitemid 44515162)
    • (2006) Trends in Immunology , vol.27 , Issue.11 , pp. 504-510
    • Altfeld, M.1    Allen, T.M.2
  • 8
    • 3543078012 scopus 로고    scopus 로고
    • HIV and SIV CTL escape: Implications for vaccine design
    • Goulder PJ, Watkins DI (2004) HIV and SIV CTL escape: Implications for vaccine design. Nat Rev Immunol 4:630-640. (Pubitemid 39025048)
    • (2004) Nature Reviews Immunology , vol.4 , Issue.8 , pp. 630-640
    • Goulder, P.J.R.1    Watkins, D.I.2
  • 9
    • 0002478260 scopus 로고
    • Random matrices in physics
    • Wigner EP (1967) Random matrices in physics. SIAM Rev 9:1-23.
    • (1967) SIAM Rev , vol.9 , pp. 1-23
    • Wigner, E.P.1
  • 10
    • 33646976588 scopus 로고    scopus 로고
    • Random matrix approach to cross correlations in financial data
    • Plerou V, et al. (2002) Random matrix approach to cross correlations in financial data. Phys Rev E Stat Nonlin Soft Matter Phys 65:066126.
    • (2002) Phys Rev E Stat Nonlin Soft Matter Phys , vol.65 , pp. 066126
    • Plerou, V.1
  • 12
    • 68749107059 scopus 로고    scopus 로고
    • Protein sectors: Evolutionary units of three-dimensional structure
    • Halabi N, Rivoire O, Leibler S, Ranganathan R (2009) Protein sectors: Evolutionary units of three-dimensional structure. Cell 138:774-786.
    • (2009) Cell , vol.138 , pp. 774-786
    • Halabi, N.1    Rivoire, O.2    Leibler, S.3    Ranganathan, R.4
  • 14
    • 68949209789 scopus 로고    scopus 로고
    • HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
    • Brumme ZL, et al. (2009) HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS ONE 4:e6687.
    • (2009) PLoS ONE , vol.4
    • Brumme, Z.L.1
  • 16
    • 63149157476 scopus 로고    scopus 로고
    • HLA-associated viral mutations are common in human immunodeficiency virus type 1 elite controllers
    • Miura T, et al. (2009) HLA-associated viral mutations are common in human immunodeficiency virus type 1 elite controllers. J Virol 83:3407-3412.
    • (2009) J Virol , vol.83 , pp. 3407-3412
    • Miura, T.1
  • 17
    • 0141571239 scopus 로고    scopus 로고
    • Covariation of amino acid positions in HIV-1 protease
    • DOI 10.1016/S0042-6822(03)00484-7
    • Hoffman NG, Schiffer CA, Swanstrom R (2003) Covariation of amino acid positions in HIV-1 protease. Virology 314:536-548. (Pubitemid 37206360)
    • (2003) Virology , vol.314 , Issue.2 , pp. 536-548
    • Hoffman, N.G.1    Schiffer, C.A.2    Swanstrom, R.3
  • 19
    • 67549109069 scopus 로고    scopus 로고
    • X-ray structures of the hexameric building block of the HIV capsid
    • Pornillos O, et al. (2009) X-ray structures of the hexameric building block of the HIV capsid. Cell 137:1282-1292.
    • (2009) Cell , vol.137 , pp. 1282-1292
    • Pornillos, O.1
  • 20
    • 84857959077 scopus 로고    scopus 로고
    • Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response
    • Troyer RM, et al. (2009) Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. PLoS Pathog 5:e1000365.
    • (2009) PLoS Pathog , vol.5
    • Troyer, R.M.1
  • 21
    • 1542284115 scopus 로고    scopus 로고
    • The molecular basis of HIV capsid assembly - Five years of progress
    • DOI 10.1002/rmv.418
    • Adamson CS, Jones IM (2004) The molecular basis of HIV capsid assembly - Five years of progress. Rev Med Virol 14:107-121. (Pubitemid 38316010)
    • (2004) Reviews in Medical Virology , vol.14 , Issue.2 , pp. 107-121
    • Adamson, C.S.1    Jones, I.M.2
  • 22
    • 78650084232 scopus 로고    scopus 로고
    • The major genetic determinants of HIV-1 control affect HLA class I peptide presentation
    • International HIV Controllers Study
    • Pereyra F, et al.; International HIV Controllers Study (2010) The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science 330:1551-1557.
    • (2010) Science , vol.330 , pp. 1551-1557
    • Pereyra, F.1
  • 23
    • 77952742298 scopus 로고    scopus 로고
    • Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection
    • Kosmrlj A, et al. (2010) Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection. Nature 465:350-354.
    • (2010) Nature , vol.465 , pp. 350-354
    • Kosmrlj, A.1
  • 24
    • 34548472899 scopus 로고    scopus 로고
    • High-resolution HLA alleles and haplotypes in the United States population
    • DOI 10.1016/j.humimm.2007.04.005, PII S0198885907000948
    • Maiers M, Gragert L, Klitz W (2007) High-resolution HLA alleles and haplotypes in the United States population. Hum Immunol 68:779-788. (Pubitemid 47379974)
    • (2007) Human Immunology , vol.68 , Issue.9 , pp. 779-788
    • Maiers, M.1    Gragert, L.2    Klitz, W.3
  • 26
    • 42549138499 scopus 로고    scopus 로고
    • Immunotherapy of established (pre)malignant disease by synthetic long peptide vaccines
    • DOI 10.1038/nrc2373, PII NRC2373
    • Melief CJ, van der Burg SH (2008) Immunotherapy of established (pre)malignant disease by synthetic long peptide vaccines. Nat Rev Cancer 8:351-360. (Pubitemid 351589701)
    • (2008) Nature Reviews Cancer , vol.8 , Issue.5 , pp. 351-360
    • Melief, C.J.M.1    Van Der, B.S.H.2
  • 27
    • 77949263061 scopus 로고    scopus 로고
    • Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys
    • Barouch DH, et al. (2010) Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys. Nat Med 16:319-323.
    • (2010) Nat Med , vol.16 , pp. 319-323
    • Barouch, D.H.1
  • 28
    • 79952346402 scopus 로고    scopus 로고
    • The STEP study provides a hint that vaccine induction of the right CD8+ T cell responses can facilitate immune control of HIV
    • Altfeld M, Goulder PJ (2011) The STEP study provides a hint that vaccine induction of the right CD8+ T cell responses can facilitate immune control of HIV. J Infect Dis 203:753-755.
    • (2011) J Infect Dis , vol.203 , pp. 753-755
    • Altfeld, M.1    Goulder, P.J.2
  • 29
    • 43349093759 scopus 로고    scopus 로고
    • Analysis of correlated mutations in HIV-1 protease using spectral clustering
    • DOI 10.1093/bioinformatics/btn110
    • Liu Y, Eyal E, Bahar I (2008) Analysis of correlated mutations in HIV-1 protease using spectral clustering. Bioinformatics 24:1243-1250. (Pubitemid 351659620)
    • (2008) Bioinformatics , vol.24 , Issue.10 , pp. 1243-1250
    • Liu, Y.1    Eyal, E.2    Bahar, I.3
  • 30
    • 33744457709 scopus 로고    scopus 로고
    • A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses
    • DOI 10.1534/genetics.105.053249
    • Fares MA, Travers SAA (2006) A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. Genetics 173:9-23. (Pubitemid 43800180)
    • (2006) Genetics , vol.173 , Issue.1 , pp. 9-23
    • Fares, M.A.1    Travers, S.A.A.2
  • 32
    • 67650924875 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1-specific CD8+ T-cell responses during primary infection are major determinants of the viral set point and loss of CD4+ T cells
    • Streeck H, et al. (2009) Human immunodeficiency virus type 1-specific CD8+ T-cell responses during primary infection are major determinants of the viral set point and loss of CD4+ T cells. J Virol 83:7641-7648.
    • (2009) J Virol , vol.83 , pp. 7641-7648
    • Streeck, H.1
  • 33
    • 50149101954 scopus 로고    scopus 로고
    • Genetic characterization of human immunodeficiency virus type 1 in elite controllers: Lack of gross genetic defects or common amino acid changes
    • Miura T, et al. (2008) Genetic characterization of human immunodeficiency virus type 1 in elite controllers: Lack of gross genetic defects or common amino acid changes. J Virol 82:8422-8430.
    • (2008) J Virol , vol.82 , pp. 8422-8430
    • Miura, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.