-
3
-
-
70350344987
-
Molecular evolution of novel swine-origin A/H1N1 influenza viruses among and before human
-
doi:10.1007/s11262-009-0393-7
-
Ding N, Wu N, Xu Q, Chen K, Zhang C (2009) Molecular evolution of novel swine-origin A/H1N1 influenza viruses among and before human. Virus Genes 39: 293-300. doi: 10. 1007/s11262-009-0393-7.
-
(2009)
Virus Genes
, vol.39
, pp. 293-300
-
-
Ding, N.1
Wu, N.2
Xu, Q.3
Chen, K.4
Zhang, C.5
-
4
-
-
67649538978
-
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
-
doi:10.1038/nature08182
-
Smith GJD, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M et al (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459: 1122-1125. doi: 10. 1038/nature08182.
-
(2009)
Nature
, vol.459
, pp. 1122-1125
-
-
Smith, G.J.D.1
Vijaykrishna, D.2
Bahl, J.3
Lycett, S.J.4
Worobey, M.5
-
5
-
-
79960384534
-
Influenza A viruses: new research developments
-
doi:10.1038/nrmicro2613
-
Medina RA, García-Sastre A (2011) Influenza A viruses: new research developments. Nat Rev Microbiol 9: 590-603. doi: 10. 1038/nrmicro2613.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 590-603
-
-
Medina, R.A.1
García-Sastre, A.2
-
6
-
-
79952140131
-
The early diversification of influenza A/H1N1pdm
-
doi: 10. 1371/currents. RRN1126
-
Nelson M, Spiro D, Wentworth D, Beck E, Fan J et al. (2009) The early diversification of influenza A/H1N1pdm. PLoS Curr 1. doi: 10. 1371/currents. RRN1126.
-
(2009)
PLoS Curr
, vol.1
-
-
Nelson, M.1
Spiro, D.2
Wentworth, D.3
Beck, E.4
Fan, J.5
-
7
-
-
77149147085
-
Detection of molecular markers of drug resistance in 2009 pandemic influenza A (H1N1) viruses by pyrosequencing
-
doi:10.1128/AAC.01417-09
-
Deyde VM, Sheu TG, Trujillo AA, Okomo-Adhiambo M, Garten R et al (2010) Detection of molecular markers of drug resistance in 2009 pandemic influenza A (H1N1) viruses by pyrosequencing. Antimicrob Agents Chemother 54: 1102-1110. doi: 10. 1128/AAC. 01417-09.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 1102-1110
-
-
Deyde, V.M.1
Sheu, T.G.2
Trujillo, A.A.3
Okomo-Adhiambo, M.4
Garten, R.5
-
8
-
-
77953499074
-
Genomic analysis of pandemic (H1N1) 2009 reveals association of increasing disease severity with emergence of novel hemagglutinin mutations
-
Glinsky GV (2010) Genomic analysis of pandemic (H1N1) 2009 reveals association of increasing disease severity with emergence of novel hemagglutinin mutations. Cell cycle 9: 958-970.
-
(2010)
Cell Cycle
, vol.9
, pp. 958-970
-
-
Glinsky, G.V.1
-
9
-
-
77958537904
-
All that glitters is not gold - founder effects complicate associations of flu mutations to disease severity
-
doi:10.1186/1743-422X-7-297
-
Lee R, Santos C, de Paiva TM, Cui L, Sirota F et al (2010) All that glitters is not gold - founder effects complicate associations of flu mutations to disease severity. Virol J 7: 297. doi: 10. 1186/1743-422X-7-297.
-
(2010)
Virol J
, vol.7
, pp. 297
-
-
Lee, R.1
Santos, C.2
de Paiva, T.M.3
Cui, L.4
Sirota, F.5
-
10
-
-
84897047580
-
-
Cevs
-
Cevs (2011) Boletim Epidemiológico. http://www. saude. rs. gov. br/upload/1343328296_Boletim%20Epidemio%20Influenza. 13,%20n. 3, set.,%202011. pdf.
-
(2011)
Boletim Epidemiológico
-
-
-
12
-
-
84855906025
-
Viral load and epidemiological profile of patients infected by pandemic influenza a (H1N1) 2009 and seasonal influenza a virus in Southern Brazil
-
doi:10.1002/jmv.23198
-
Veiga ABG, Kretzmann NA, Correa LT, Goshiyama AM, Baccin T et al (2012) Viral load and epidemiological profile of patients infected by pandemic influenza a (H1N1) 2009 and seasonal influenza a virus in Southern Brazil. J Med Virol 84: 371-379. doi: 10. 1002/jmv. 23198.
-
(2012)
J Med Virol
, vol.84
, pp. 371-379
-
-
Veiga, A.B.G.1
Kretzmann, N.A.2
Correa, L.T.3
Goshiyama, A.M.4
Baccin, T.5
-
13
-
-
70349272201
-
Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses
-
doi:10.1128/JVI.01109-09
-
Zhou B, Donnelly ME, Scholes DT, St George K, Hatta M et al (2009) Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses. J Virol 83: 10309-10313. doi: 10. 1128/JVI. 01109-09.
-
(2009)
J Virol
, vol.83
, pp. 10309-10313
-
-
Zhou, B.1
Donnelly, M.E.2
Scholes, D.T.3
St George, K.4
Hatta, M.5
-
14
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
doi:10.1093/nar/gkh340
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. doi: 10. 1093/nar/gkh340.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
doi:10.1093/molbev/msr121
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi: 10. 1093/molbev/msr121.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
16
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
doi:10.1093/nar/gkn180
-
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S et al (2008) Phylogeny. fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36: W465-W469. doi: 10. 1093/nar/gkn180.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
-
17
-
-
74049123219
-
The epitope regions of H1-subtype influenza A, with application to vaccine efficacy
-
doi:10.1093/protein/gzp027
-
Deem MW, Pan K (2009) The epitope regions of H1-subtype influenza A, with application to vaccine efficacy. Protein Eng Des Sel 22: 543-546. doi: 10. 1093/protein/gzp027.
-
(2009)
Protein Eng Des Sel
, vol.22
, pp. 543-546
-
-
Deem, M.W.1
Pan, K.2
-
18
-
-
34748886657
-
PAST: paleontological statistics software package for education and data analysis
-
Hammer Ø, Harper DAT, Ryan P (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4.
-
(2001)
Palaeontol Electron
, pp. 4
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.3
-
19
-
-
77951048371
-
Observed association between the HA1 mutation D222G in the 2009 pandemic influenza A(H1N1) virus and severe clinical outcome, Norway 2009-2010
-
Kilander A, Rykkvin R, Dudman SG, Hungnes O (2010) Observed association between the HA1 mutation D222G in the 2009 pandemic influenza A(H1N1) virus and severe clinical outcome, Norway 2009-2010. Euro Surveill 15.
-
(2010)
Euro Surveill
, pp. 15
-
-
Kilander, A.1
Rykkvin, R.2
Dudman, S.G.3
Hungnes, O.4
-
20
-
-
79960281676
-
A new common mutation in the hemagglutinin of the 2009 (H1N1) influenza A virus
-
doi: 10. 1371/currents. RRN1162
-
Maurer-Stroh S, Lee RTC, Eisenhaber F, Cui L, Phuah SP et al. (2010) A new common mutation in the hemagglutinin of the 2009 (H1N1) influenza A virus. PLoS Curr 2. doi: 10. 1371/currents. RRN1162.
-
(2010)
PLoS Curr
, pp. 2
-
-
Maurer-Stroh, S.1
Lee, R.T.C.2
Eisenhaber, F.3
Cui, L.4
Phuah, S.P.5
-
21
-
-
79960267817
-
Increased detection in Australia and Singapore of a novel influenza A(H1N1)2009 variant with reduced oseltamivir and zanamivir sensitivity due to a S247N neuraminidase mutation
-
Hurt AC, Lee RT, Leang SK, Cui L, Deng YM et al. (2011) Increased detection in Australia and Singapore of a novel influenza A(H1N1)2009 variant with reduced oseltamivir and zanamivir sensitivity due to a S247N neuraminidase mutation. Euro Surveill 16.
-
(2011)
Euro Surveill
, pp. 16
-
-
Hurt, A.C.1
Lee, R.T.2
Leang, S.K.3
Cui, L.4
Deng, Y.M.5
-
22
-
-
78650765472
-
Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match
-
doi:10.1007/s00705-010-0825-7
-
Goñi N, Moratorio G, Ramas V, Coppola L, Chiparelli H et al (2011) Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match. Arch virol 156: 87-94. doi: 10. 1007/s00705-010-0825-7.
-
(2011)
Arch Virol
, vol.156
, pp. 87-94
-
-
Goñi, N.1
Moratorio, G.2
Ramas, V.3
Coppola, L.4
Chiparelli, H.5
-
23
-
-
78650644127
-
Genetic and phylogenetic analyses of influenza A H1N1pdm virus in Buenos Aires, Argentina
-
doi:10.1128/JVI.00936-10
-
Barrero PR, Viegas M, Valinotto LE, Mistchenko AS (2011) Genetic and phylogenetic analyses of influenza A H1N1pdm virus in Buenos Aires, Argentina. J Virol 85: 1058-1066. doi: 10. 1128/JVI. 00936-10.
-
(2011)
J Virol
, vol.85
, pp. 1058-1066
-
-
Barrero, P.R.1
Viegas, M.2
Valinotto, L.E.3
Mistchenko, A.S.4
-
24
-
-
78650639134
-
Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States
-
doi:10.1128/JVI.01762-10
-
Nelson MI, Tan Y, Ghedin E, Wentworth DE, St. George K et al (2011) Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States. J Virol 85: 828-834. doi: 10. 1128/JVI. 01762-10.
-
(2011)
J Virol
, vol.85
, pp. 828-834
-
-
Nelson, M.I.1
Tan, Y.2
Ghedin, E.3
Wentworth, D.E.4
St.George, K.5
-
25
-
-
77955237980
-
Genetic characterization of the influenza A pandemic (H1N1) 2009 virus isolates from India
-
doi:10.1371/journal.pone.0009693
-
Potdar VA, Chadha MS, Jadhav SM, Mullick J, Cherian SS et al (2010) Genetic characterization of the influenza A pandemic (H1N1) 2009 virus isolates from India. PLoS ONE 5: e9693. doi: 10. 1371/journal. pone. 0009693.
-
(2010)
PLoS ONE
, vol.5
-
-
Potdar, V.A.1
Chadha, M.S.2
Jadhav, S.M.3
Mullick, J.4
Cherian, S.S.5
-
26
-
-
79251541766
-
Nationwide molecular surveillance of pandemic H1N1 influenza A virus genomes: Canada, 2009
-
doi:10.1371/journal.pone.0016087
-
Graham M, Liang B, van Domselaar G, Bastien N, Beaudoin C et al (2011) Nationwide molecular surveillance of pandemic H1N1 influenza A virus genomes: Canada, 2009. PLoS ONE 6: e16087. doi: 10. 1371/journal. pone. 0016087.
-
(2011)
PLoS ONE
, vol.6
-
-
Graham, M.1
Liang, B.2
van Domselaar, G.3
Bastien, N.4
Beaudoin, C.5
-
27
-
-
0030747157
-
RNA virus mutations and fitness for survival
-
doi:10.1146/annurev.micro.51.1.151
-
Domingo E, Holland JJ (1997) RNA virus mutations and fitness for survival. Annu Rev Microbiol 51: 151-178. doi: 10. 1146/annurev. micro. 51. 1. 151.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 151-178
-
-
Domingo, E.1
Holland, J.J.2
-
28
-
-
79954598776
-
Positive selection on hemagglutinin and neuraminidase genes of H1N1 influenza viruses
-
doi:10.1186/1743-422X-8-183
-
Li W, Shi W, Qiao H, Ho S, Luo A et al (2011) Positive selection on hemagglutinin and neuraminidase genes of H1N1 influenza viruses. Virol J 8: 183. doi: 10. 1186/1743-422X-8-183.
-
(2011)
Virol J
, vol.8
, pp. 183
-
-
Li, W.1
Shi, W.2
Qiao, H.3
Ho, S.4
Luo, A.5
-
29
-
-
0038133117
-
Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus
-
doi:10.1073/pnas.1132114100
-
Plotkin JB, Dushoff J (2003) Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus. Proc Natl Acad Sci USA 100: 7152-7157. doi: 10. 1073/pnas. 1132114100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7152-7157
-
-
Plotkin, J.B.1
Dushoff, J.2
-
30
-
-
70450284441
-
Evolutionary complexities of swine flu H1N1 gene sequences of 2009
-
doi:10.1016/j.bbrc.2009.09.060
-
Sinha NK, Roy A, Das B, Das S, Basak S (2009) Evolutionary complexities of swine flu H1N1 gene sequences of 2009. Biochem Biophys Res Commun 390: 349-351. doi: 10. 1016/j. bbrc. 2009. 09. 060.
-
(2009)
Biochem Biophys Res Commun
, vol.390
, pp. 349-351
-
-
Sinha, N.K.1
Roy, A.2
Das, B.3
Das, S.4
Basak, S.5
-
31
-
-
80052724323
-
Sequence analysis of the 2009 pandemic influenza A H1N1 virus haemagglutinin gene from 2009-2010 Brazilian clinical samples
-
Ferreira JL, Borborema SE, Brígido LF, Oliveira MI, Paiva TM et al (2011) Sequence analysis of the 2009 pandemic influenza A H1N1 virus haemagglutinin gene from 2009-2010 Brazilian clinical samples. Mem Inst Oswaldo Cruz 106: 613-616.
-
(2011)
Mem Inst Oswaldo Cruz
, vol.106
, pp. 613-616
-
-
Ferreira, J.L.1
Borborema, S.E.2
Brígido, L.F.3
Oliveira, M.I.4
Paiva, T.M.5
-
32
-
-
80051668527
-
Antiviral resistance surveillance for influenza A virus in Brazil: investigation on 2009 pandemic influenza A (H1N1) resistance to oseltamivir
-
doi:10.1016/j.diagmicrobio.2011.05.006
-
Souza TM, Mesquita M, Resende P, Machado V, Gregianini TS et al (2011) Antiviral resistance surveillance for influenza A virus in Brazil: investigation on 2009 pandemic influenza A (H1N1) resistance to oseltamivir. Diag Microbiol Infec Dis 71: 98-99. doi: 10. 1016/j. diagmicrobio. 2011. 05. 006.
-
(2011)
Diag Microbiol Infec Dis
, vol.71
, pp. 98-99
-
-
Souza, T.M.1
Mesquita, M.2
Resende, P.3
Machado, V.4
Gregianini, T.S.5
-
33
-
-
79251551096
-
Dual resistance to adamantanes and oseltamivir among seasonal influenza A(H1N1) viruses: 2008-2010
-
doi:10.1093/infdis/jiq005
-
Sheu TG, Fry AM, Garten RJ, Deyde VM, Shwe T et al (2011) Dual resistance to adamantanes and oseltamivir among seasonal influenza A(H1N1) viruses: 2008-2010. J Infect Dis 203: 13-17. doi: 10. 1093/infdis/jiq005.
-
(2011)
J Infect Dis
, vol.203
, pp. 13-17
-
-
Sheu, T.G.1
Fry, A.M.2
Garten, R.J.3
Deyde, V.M.4
Shwe, T.5
-
34
-
-
84863008174
-
Genetic characterization of human influenza viruses in the pandemic (2009-2010) and post-pandemic (2010-2011) periods in Japan
-
doi:10.1371/journal.pone.0036455
-
Dapat IC, Dapat C, Baranovich T, Suzuki Y, Kondo H et al (2012) Genetic characterization of human influenza viruses in the pandemic (2009-2010) and post-pandemic (2010-2011) periods in Japan. PLoS ONE 7: e36455. doi: 10. 1371/journal. pone. 0036455.
-
(2012)
PLoS ONE
, vol.7
-
-
Dapat, I.C.1
Dapat, C.2
Baranovich, T.3
Suzuki, Y.4
Kondo, H.5
-
35
-
-
80053986744
-
Minor changes in the hemagglutinin of influenza A (H1N1) 2009 virus alter its antigenic properties
-
doi:10.1371/journal.pone.0025848
-
Strengell M, Ikonen N, Ziegler T, Julkunen I (2011) Minor changes in the hemagglutinin of influenza A (H1N1) 2009 virus alter its antigenic properties. PLoS ONE 6: e25848. doi: 10. 1371/journal. pone. 0025848.
-
(2011)
PLoS ONE
, vol.6
-
-
Strengell, M.1
Ikonen, N.2
Ziegler, T.3
Julkunen, I.4
|