The European Union Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2012

EFSA Journal

Volumn 12, Issue 3, 2014, Pages

[No Author Info available]

Author keywords

antimicrobial resistance; indicator bacteria; zoonotic bacteria

Indexed keywords

EID: 85014771337     PISSN: None     EISSN: 18314732     Source Type: Journal    
DOI: 10.2903/j.efsa.2014.3590     Document Type: Article

References (61)

1. Bertrand S, Weill FX, Cloeckaert A, Vrints M, Mairiaux E, Praud K, Dierick K, Wildemauve C, Godard C, Butaye P, Imberechts H, Grimont PA and Collard JM, 2006. Clonal emergence of extended-spectrum beta-lactamase (CTX-M-2)-producing Salmonella enterica serovar Virchow isolates with reduced susceptibilities to ciprofloxacin among poultry and humans in Belgium and France (2000 to 2003). Journal of Clinical Microbiology, 44, 2897–2903.
2. Beutlich J, Jahn S, Malorny B, Hauser E, Hühn S, Schroeter A, Rodicio MR, Appel B, Threlfall J, Mevius D, Helmuth R and Guerra B, 2011. Antimicrobial Resistance and Virulence Determinants in European Salmonella Genomic Island 1-Positive Salmonella enterica Isolates from Different Origins. Applied and Environmental Microbiology, 77, 5655–5664.
3. Bosch T, Verkade E, van Luit M, Pot B, Vauterin P, Burggrave R, Savelkoul P, Kluytmans J and Schoul L, 2013. High resolution typing by whole genome mapping enables discrimination of LA-MRSA (CC398) strains and identification of transmission. PLoS One, 8, e66493.
4. Bugarel M, Vignaud M-L, Moury F, Fach P and Brisabois A, 2013. Molecular identification in monophasic and nonmotile variants of Salmonella enterica serovar Typhimurium. MicrobiologyOpen, 1, 481–489.
5. Butaye P and Nemeghaire S., 2012. MRSA Surveillance 2012: Bovines. Centrum voor Onderzoek in Diergeneeskunde en Agrochemie. Available online: www.amcra.be/sites/default/files/Report%20MRSA%20cattle%20data%202012.pdf
6. Chapman JS, 2003. Disinfectant resistance mechanisms, cross-resistance, and co-resistance. International Biodeterioration & Biodegradation, 51, 271–276.
7. de Neeling AJ, van den Broek MJM, Spalburg EC, van Santen-Verheuvel MG, Dam-Deisz WD, Boshuizen HC, van De Giessen AW, van Duijkeren E and Huijsdens XW, 2007. High prevalence of methicillin resistant Staphylococcus aureus in pigs. Veterinary Microbiology, 122, 366–372.
8. ECDC (European Centre for Disease Prevention and Control), EFSA (European Food Safety Authority), EMEA (European Medicines Agency) and SCENIHR (European Commission's Scientific Committee on Emerging and Newly Identified Health Risks), 2009. Joint Opinion on antimicrobial resistance (AMR) focused on zoonotic infections. EFSA Journal 2009;7(11):1372, 78 pp., doi:10.2903/j.efsa.2009.1372
9. ECDC (European Centre for Disease Prevention and Control), 2012. Third external quality assurance scheme for Salmonella typing. Available online: www.ecdc.europa.eu/en/publications/Publications/1204-TER-EQA-Salmonella-typing.pdf
10. ECDC (European Centre for Disease Prevention and Control), 2013. Antimicrobial resistance surveillance in Europe 2012. Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS-Net). Stockholm: ECDC; 2013. Available online: ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-surveillance-europe-2012.pdf
11. ECDC (European Centre for Disease Prevention and Control), 2014. EU protocol for harmonised monitoring of antimicrobial resistance in human Salmonella and Campylobacter isolates. Stockholm: ECDC; 2014. Available online: www.ecdc.europa.eu/en/publications/Publications/harmonised-monitoring-antimicrobial-resistance-human-salmonella-campylobacter-isolates-EU-protocol.pdf
12. EFSA (European Food Safety Authority), 2007. Report of the Task Force of Zoonoses Data Collection including a proposal for harmonized monitoring scheme of antimicrobial resistance in Salmonella in fowl (Gallus gallus), turkeys, and pigs and Campylobacter jejuni and C. coli in broilers. The EFSA Journal 2007, 96r, 1–46.
13. EFSA (European Food Safety Authority), 2008. Report from the Task Force on Zoonoses Data Collection including guidance for harmonized monitoring and reporting of antimicrobial resistance in commensal Escherichia coli and Enterococcus spp. from food animals. The EFSA Journal 2008, 141r, 1–44.
14. EFSA (European Food Safety Authority), 2009a. Joint scientific report of ECDC, EFSA and EMEA on meticillin resistant Staphylococcus aureus (MRSA) in livestock, companion animals and foods. EFSA-Q-2009-00612 (EFSA Scientific Report (2009) 301, 1–10) and EMEA/CVMP/SAGAM/62464/2009. The EFSA Journal 2009, 301r, 1–10.
15. EFSA (European Food Safety Authority), 2009b. Analysis of the baseline survey on the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) in holdings with breeding pigs, in the EU, 2008, Part A: MRSA prevalence estimates; on request from the European Commission. EFSA Journal 2009;7(11):1376, 82 pp., doi:10.2903/j.efsa.2009.1376
16. EFSA (European Food Safety Authority), 2009c. Scientific opinion of the Panel on Biological Hazards on a request from the European Commission on Assessment of the public health significance of meticillin resistant Staphylococcus aureus (MRSA) in animals and foods. The EFSA Journal 2009, 993, 1–73.
17. EFSA (European Food Safety Authority), 2010a. Analysis of the baseline survey on the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) in holdings with breeding pigs, in the EU, 2008, Part B: factors associated with MRSA contamination of holdings; on request from the European Commission. EFSA Journal 2010;8(6):1597, 67 pp., doi:10.2903/j.efsa.2010.1597
18. EFSA (European Food Safety Authority), 2010b. The Community Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from animals and food in the European Union in 2004–2007. EFSA Journal 2010;8(4):1309, 306 pp., doi:10.2903/j.efsa.2010.1309
19. EFSA (European Food Safety Authority), 2012a. Technical specifications for the analysis and reporting of data on antimicrobial resistance (AMR) in the European Union Summary Report. EFSA Journal 2012;10(2):2587, 53 pp., doi:10.2903/j.efsa.2012.2587
20. EFSA (European Food Safety Authority), 2012b. Technical specifications on the harmonised monitoring and reporting of antimicrobial resistance in Salmonella, Campylobacter and indicator Escherichia coli and Enterococcus spp. bacteria transmitted through food. EFSA Journal 2012;10(6):2742, 64 pp., doi:10.2903/j.efsa.2012.2742
21. EFSA (European Food Safety Authority), 2012c. Technical specifications for the harmonised monitoring and reporting of antimicrobial resistance in methicillin-resistent Staphylococcus aureus in food-producing animals and foods. EFSA Journal 2012;10(10):2897, 56 pp., doi:10.2903/j.efsa.2012.2897
22. EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2010a. Scientific Opinion on Quantification of the risk posed by broiler meat to human campylobacteriosis in the EU. EFSA Journal 2010;8(1):1437, 89 pp., doi:10.2903/j.efsa.2010.1437
23. EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2010b. Scientific Opinion on monitoring and assessment of the public health risk of “Salmonella Typhimurium-like” strains. EFSA Journal 2010;8(10):1826, 48 pp., doi:10.2903/j.efsa.2010.1826
24. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control), 2013. The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic agents and Food-borne Outbreaks in 2011. EFSA Journal 2013;11(4):3129, 250 pp., doi:10.2903/j.efsa.2013.3129
25. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control), 2014. The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic agents and Food-borne Outbreaks in 2012. EFSA Journal 2014;12(2):3547, 312 pp., doi:10.2903/j.efsa.2014.3547
26. Frost J, 1994. Testing for resistance to antibacterial drugs. In: Methods in practical laboratory bacteriology. Ed Chart H. CRC Press, New York, USA, p. 73–82.
27. Gal-Mor O, Valinsky L, Weinberger M, Guy S, Jaffe J, Schorr YI, Raisfeld A, Agmon V and Nissaan I, 2010. Multidrug-resistant Salmonella enterica serovar Infantis in Israel. Emerging Infectious Diseases Journal, 16, 1754–1757.
28. Garcia-Graells C, van Cleef BA, Larsen J, Denis O, Skov R and Voss A, 2013. Dynamic of livestock-associated methicillin-resistant Staphylococcus aureus CC398 in pig farm households: a pilot study. PLoS One, 31, e65512.
29. Ge B, McDermott PF, White DG and Meng J, 2005. Role of efflux pumps and topoisomerase mutations in fluoroquinolone resistance in Campylobacter jejuni and Campylobacter coli. Antimicrobial Agents and Chemotherapy, 49, 3347–3354.
30. Gibreel A and Taylor DE, 2006. Macrolide resistance in Campylobacter jejuni and Campylobacter coli. Journal of Antimicrobial Chemotherapy, 58, 243–255.
31. Graveland H, Wagenaar JA, Heesterbeek H, Mevius D, van Duijkeren E and Heederik D, 2010. Methicillin resistant Staphylococcus aureus ST398 in veal calf farming: human MRSA carriage related with animal antimicrobial usage and farm hygiene. PLoS ONE, 5, e10990.
32. Hauschild T, Fessler AT, Kadlec K, Billerbeck C and Schwarz S, 2012. Detection of the novel vga(E) gene in methicillin-resistant Staphylococcus aureus CC398 isolates from cattle and poultry. Journal of Antimicrobial Chemotherapy, 67, 503–504.
33. Kadlec K, Pomba CF, Couto N and Schwarz S, 2010. Small plasmids carrying vga(A) or vga(C) genes mediate resistance to lincosamides, pleuromutilins and streptogramin A antibiotics in methicillin-resistant Staphylococcus aureus ST398 from swine. Journal of Antimicrobial Chemotherapy, 65, 2692–2698.
34. Kahlmeter G, Brown DF, Goldstein FW, MacGowan AP, Mouton JW, Osterlund A, Rodloff A, Steinbakk M, Urbaskova P and Vatopoulos A, 2003. European harmonization of MIC breakpoints for antimicrobial susceptibility testing of bacteria. Journal of Antimicrobial Chemotherapy, 52, 145–148.
35. Kehrenberg C, Cuny C, Strommenger B, Schwarz S and Witte W, 2009. Methicillin-resistant and -susceptible Staphylococcus aureus strains of clonal lineages ST398 and ST9 from swine carry the multidrug resistance gene cfr. Antimicrobial Agents and Chemotherapy, 53, 779–781.
36. Kerouanton A, Rose V, Weill FX, Granier S and Denis M, 2013. Genetic diversity and antimicrobial resistance profiles of Salmonella enterica serotype Derby isolated from pigs, pork and humans in France. Foodborne Pathogens and Disease, 10, 977–984.
37. Kirkpatrick BD and Tribble DR, 2011. Update on human Campylobacter jejuni infections. Current opinion in Gastroenterology, 27, 1–7.
38. Lan R, Reeves PR and Octavia S, 2009. Population structure, origins and evolution of major Salmonella enterica clones. Infection, Genetics and Evolution, 9, 996–1005.
39. Le Hello S, Hendriksen RS, Doublet B, Fisher I, Nielsen EM, Whichard JM, Bouchrif B, Fashae K, Granier SA, Jourdan-Da Silva N, Cloeckaert A, Threlfall EJ, Angulo FJ, Aarestrup FM, Wain J and Weill FX, 2011. International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin. Journal of Infectious Diseases, 204, 675–684.
40. Luangtongkum T, Jeon B, Han J, Plummer P, Logue CM and Zhang Q, 2009. Antibiotic resistance in Campylobacter: emergence, transmission, and persistence. Future Microbiology, 4, 189–200.
41. Magiorakos AP, Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, Paterson DL, Rice LB, Stelling J, Struelens MJ, Vatopoulos A, Weber JT and Monnet DL, 2012. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. Clinical Microbiology and Infection, 18, 268–281.
42. Marchant M, Vinué L, Torres C and Moreno MA, 2013. Change of integrons over time in Escherichia coli isolates recovered from healthy pigs and chickens. Veterinary Microbiology, 163, 124–132.
43. CMY-2 genes in Escherichia coli isolates from diseased cattle in France. Journal of Medical Microbiology, 59, 467–471.
44. Mulders MN, Haenen AP, Geenen PL, Vesseur PC, Poldervaart ES, Bosch T, Huijsdens XW, Hengeveld PD, Dam-Deisz WD, Graat EA, Mevius D, Voss A and Van De Giessen AW, 2010. Prevalence of livestock-associated MRSA in broiler flocks and risk factors for 270 slaughterhouse personnel in the Netherlands. Epidemiology and Infection, 138, 743–755.
45. Nirdnoy W, Mason CJ and Guerry P, 2005. Mosaic structure of a multiple-drug-resistant, conjugative plasmid from Campylobacter jejuni. Antimicrobial Agents and Chemotherapy, 49, 2454–2459.
46. Nógrády N, Király M, Davies R and Nagy B, 2012. Multidrug resistant clones of Salmonella Infantis of broiler origin in Europe. International Journal of Food Microbiology, 157, 108–112.
47. Overesch G, Büttner S, Rossano A and Perreten V, 2011. The increase of methicillin-resistant Staphylococcus aureus (MRSA) and the presence of an unusual sequence type ST49 in slaughter pigs in Switzerland. BMC Veterinary Research, 7, 30–39.
48. Piddock LJ, Ricci V, Pumbwe L, Everett MJ and Griggs DJ, 2003. Fluoroquinolone resistance in Campylobacter species from man and animals: detection of mutations in topoisomerase genes. Journal of Antimicrobial Chemotherapy, 5, 19–26.
49. Popovic-Uroic T, 1989. Campylobacter jejuni and Campylobacter coli diarrhoea in rural and urban populations in Yugoslavia. Epidemiology and Infection, 102, 59–67.
50. Qin S, Wang Y, Zhang Q, Chen X, Shen Z, Deng F, Wu C and Shen J, 2012. Identification of a novel genomic island conferring resistance to multiple aminoglycoside antibiotics in Campylobacter coli. Antimicrobial Agents and Chemotherapy, 5, 5332–5339.
51. Rahmani M, Peighambari SM, Svendsen CA, Cavaco LM, Agersø Y and Hendriksen RS, 2013. Molecular clonality and antimicrobial resistance in Salmonella enterica serovars Enteritidis and Infantis from broilers in three Northern regions of Iran. BMC Veterinary Research, 9, 66.
52. Richter A, Sting R, Poppe C, Rau J, Tenhagen BA, Guerra B, Hafez HM and Fetsch A, 2012. Prevalence of types of methicillin-resistant Staphylococcus aureus in turkey flocks and personnel attending the animals. Epidemiololgy and Infection, 140, 2223–2232.
53. Rodríguez I, Rodicio MR, Guerra B and Hopkins K, 2012. Spread of multi-drug resistant invasive Salmonella enterica serovar Enteritidis. Emerging and Infectious Diseases, 18, 1173–1176.
54. Skirrow MB, 1998. Campylobacteriosis. In Zoonoses. Eds Palmer SR, Soulsby and Simpson DIH. Oxford University Press, Oxford, UK, p. 37–46.
55. Valdezate S, Vidal A, Herrera-León S, Pozo J, Rubio P, Usera MA, Carvajal A and Echeita A, 2005. Salmonella Derby clonal spread from pork. Emerging and Infectious Disease, 11, 694–698.
56. Vandendriessche S, Vanderhaeghen W, Soares FV, Hallin M, Catry B, Hermans K, Butaye P, Haesebrouck F, Struelens MJ and Denis O, 2013. Prevalence, risk factors and genetic diversity of methicillin-resistant Staphylococcus aureus carried by humans and animals across livestock production sectors. Journal of Antimicrobial Chemotherapy, 68, 1510–1516.
57. Velge P, Cloeckaert A and Barrow P, 2005. Emergence of Salmonella epidemics: the problems related to Salmonella enterica serotype Enteritidis and multiple antibiotic resistance in other major serotypes. Veterinary Research, 36, 267–288.
58. Verkade E, van Benthem B, den Bergh MK, van Cleef B, van Rijen M, Bosch T and Kluytmans J, 2013. Dynamics and determinants of Staphylococcus aureus carriage in livestock veterinarians: a prospective cohort study. Clinical Infectious Diseases, 57, e11–17.
59. Wasyl D and Hoszowski A, 2012. First isolation of ESBL-producing Salmonella and emergence of multiresistant Salmonella Kentucky in turkey in Poland. Food Research International, 45, 958–961.
60. Weill F-X, Lailler R, Praud K, Kérouanton A, Fabre L, Brisabois A, Grimont PAD and Cloeckaert A, 2004. Emergence of extended-spectrum-β-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France. Journal of Clinical Microbiology, 42, 5767–5773.
61. Woodford N, Wareham DW, Guerra B and Teale C. 2013. Carbapenemase-producing Enterobacteriaceae and non-Enterobacteriaceae from animals and the environment: an emerging public health risk of our own making? Journal of Antimicrobial Chemotherapy, 69, 287–291.