Technical specifications on the harmonised monitoring and reporting of antimicrobial resistance in Salmonella, Campylobacter and indicator Escherichia coli and Enterococcus spp. bacteria transmitted through food

EFSA Journal

Volumn 10, Issue 6, 2012, Pages

[No Author Info available]

Author keywords

antimicrobial resistance; Campylobacter; Enterococcus spp; Harmonisation; indicator Escherichia coli; monitoring; reporting; Salmonella

Indexed keywords

EID: 85056825615     PISSN: None     EISSN: 18314732     Source Type: Journal    
DOI: 10.2903/j.efsa.2012.2742     Document Type: Article

References (43)

1. Aarestrup FM and Engberg J, 2001. Antimicrobial resistance of thermophilic Campylobacter. Veterinary Research, 32, 311–321.
2. Belanger AE and Shryock TR, 2007. Macrolide-resistant Campylobacter: the meat of the matter. Journal of Antimicrobial Chemotherapy, 60, 715–723.
3. Boyd D, Peters GA, Cloeckaert A, Boumedine KS, Chaslus-Dancla E, Imberechts H and Mulvey MR, 2001. Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona. Journal of Bacteriology, 183, 5725–5732.
4. Cohen Stuart J, Leverstein-Van Hall MA, Dutch Working Party on the Detection of Highly Resistant Microorganisms, 2010. Guideline for phenotypic screening and confirmation of carbapenemases in Enterobacteriaceae. International Journal of Antimicrobial Agents, 36, 205–210.
5. Courvalin P, 2006. Vancomycin resistance in gram-positive cocci. Clinical Infectious Diseases, 42 Supplement 1, S25–34.
6. DGI (Deutsche Gesellschaft für Infektiologie), 2011. EHEC infection and antibiotic therapy - a position paper of the German Society for Infectious Diseases (DGI) in cooperation with other societies and Robert-Koch-Institute. DGI, Freiburg, 4.6.2011. Available at: www.dgi-net.de/images/stories/DGI-position_paper_EHECantibiotics_English_version_plus_references_20110604.pdf
7. ECDC (European Centre for Disease Prevention and Control, EFSA (European Food Safety Authority), EMEA (European Medicines Agency) and SCENIHR (European Commission's Scientific Committee on Emerging and Newly Identified Health Risks, 2009. Joint Opinion on antimicrobial resistance (AMR) focused on zoonotic infections. EFSA Journal, 7(11):1372. 78 pp.
8. EFSA (European Food Safety Authority), 2007. Report of the Task Force of Zoonoses Data Collection including a proposal for harmonized monitoring scheme of antimicrobial resistance in Salmonella in fowl (Gallus gallus), turkeys, and pigs and Campylobacter jejuni and C. coli in broilers. The EFSA Journal, 96, 1–46.
9. EFSA (European Food Safety Authority), 2008a. Report from the Task Force on Zoonoses Data Collection including guidance for harmonized monitoring and reporting of antimicrobial resistance in commensal Escherichia coli and Enterococcus spp. from food animals. The EFSA Journal, 141, 1–44.
10. EFSA (European Food Safety Authority), 2008b. Scientific Opinion of the Panel on Biological Hazards on a request from the European Commission on Assessment of the Public Health significance of meticillin resistant Staphylococcus aureus (MRSA) in animals and foods. The EFSA Journal, 993, 1–73.
11. EFSA (European Food Safety Authority), 2008c. Scientific Opinion of the Panel on Biological Hazards on a request from the European Food Safety Authority on foodborne antimicrobial resistance as a biological hazard. The EFSA Journal, 765, 1–87.
12. EFSA (European Food Safety Authority), 2010a. The Community Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from animals and food in the European Union in 2004–2007. EFSA Journal, 8(4):1309, 304 pp.
13. EFSA (European Food Safety Authority), 2010b. The Community Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from animals and food in the European Union in 2008. EFSA Journal, 8(7):1658, 261 pp.
14. EFSA (European Food Safety Authority), 2011a. Scientific Opinion on the public health risks of bacterial strains producing extended-spectrum β-lactamases and/or AmpC β-lactamases in food and food-producing animals. EFSA Journal, 9(8):2322, 95 pp.
15. EFSA (European Food Safety Authority), 2011b. Shiga toxin-producing E. coli (STEC) O104:H4 2011 outbreaks in Europe: Taking Stock. EFSA Journal, 9(10):2390, 22 pp.
16. EFSA (European Food Safety Authority), 2012a. Technical specifications for the analysis and reporting of data on antimicrobial resistance in the European Union Summary Report. EFSA Journal, 10(2):2587, 53 pp.
17. EFSA (European Food Safety Authority), 2012b. Technical report on the use of Excel/XML files for submission of data to the Zoonoses system. Supporting Publications 2012:EN-233, 33 pp.
18. EFSA (European Food Safety Authority), 2012c. A pilot with volunteering reporting countries on submission of antimicrobial resistance isolate-based data in Excel and XML formats using the Data Collection Framework. Supporting Publications 2012:EN-220, 16 pp.
19. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control), 2011. The European Union Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in the European Union in 2009. EFSA Journal, 9(7):2154, 321 pp.
20. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control), 2012. The European Union Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2010. EFSA Journal, 10(3):2598, 233 pp.
21. EFSA Panel on Biological Hazards (BIOHAZ), 2011. Scientific Opinion on the public health risks of bacterial strains producing extended-spectrum β-lactamases and/or AmpC β-lactamases in food and food-producing animals. EFSA Journal, 9(8):2322, 95 pp.
22. Firth D, 1993. Bias reduction of maximum likelihood estimates. Biometrika, 80, 27–38.
23. Fischer J, Rodríguez I, Schmoger S, Friese A, Roesler U, Helmuth R and Guerra B, published ahead of print 27 March 2012. Escherichia coli producing VIM-1 carbapenemase isolated on a pig farm. Journal of Antimicrobial Chemotherapy.
24. Girlich D, Poirel L, Carattoli A, Kempf I, Lartigue M-F, Bertini A and Nordmann P, 2007 Extended-spectrum beta-lactamase CTX-M-1 in Escherichia coli isolates from healthy poultry in France. Applied and Environmental Microbiology, 73, 4681–468.
25. Horton RA, Randall LP, Snary EL, Cockrem H, Lotz S, Wearing H, Duncan D, Rabie A, Mclaren I, 26 Watson E, La Ragione RM and Coldham NG, 2011. Faecal carriage and shedding density of CTX-27 M extended-spectrum beta-lactamase-producing Escherichia coli in cattle, chickens, and pigs: 28 Implications for environmental contamination and food production. Applied and Environmental 29 Microbiology, 77, 3715–3719.
26. Huang TD, Bogaerts P, Berhin C, Guisset A and Glupczynski Y, 2010. Evaluation of Brilliance ESBL agar, a novel chromogenic medium for detection of extended-spectrum-beta-lactamase-producing Enterobacteriaceae. Journal of Clinical Microbiology, 48, 2091–2096.
27. Hudson DJ, 1971. Interval Estimation from the Likelihood Function. Journal of the Royal Statistical Society, Series B, 33, 256–262.
28. Kahlmeter G, Brown DFJ, Goldstein FW, MacGowan AP, Mouton JW, Österlund A, Rodloff A Steinbakk M, Urbaskova P and Vatopoulos A, 2003. European harmonization of MIC breakpoints for antimicrobial susceptibility testing of bacteria. Journal of Antimicrobial Chemotherapy, 52, 145–148.
29. Landman D, Georgescu C, Martin DA and Quale J, 2008. Polymyxins revisited. Clinical Microbiology Reviews, 21, 449–465.
30. Leverstein-van Hall MA, Dierikx CM, Cohen Stuart J, Voets GM, van den Munckhof MP, van Essen-Zandbergen A, Platteel T, Fluit AC, van De Sande-Bruinsma N, Scharinga J, Bonten MJ, Mevius DJ and National ESBL surveillance group, 2011. Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. Clinical Microbiology and Infection, 17, 873–880.
31. MARAN-2009, 2011. Monitoring of Antimicrobial Resistance and Antibiotic Usage in Animals in the Netherlands in 2009. 67 pp. available at: www.maran.wur.nl
32. Nordmann P, Girlich D and Poirel L, published ahead of print 22 February 2012. Detection of carbapenemase producers in Enterobacteriaceae using a novel screening medium. Journal of Clinical Microbiology.
33. Overdevest I, Willemsen I, Rijnsburger M, Eustace A, Xu L, Hawkey P, Heck M, Savelkoul P, Vandenbroucke-Grauls C, van der Zwaluw K, Huijsdens X and Kluytmans J, 2011. Extended-spectrum β-lactamase genes of Escherichia coli in chicken meat and humans, The Netherlands. Emerging Infectious Diseases, 17, 1216–1222.
34. Poirel L, Berçot B, Milleman Y, Bonnin RA, Panneaux G and Nordmann P, 2012. Carbapenemase-producing Acinetobacter spp. in cattle in France. Emerging Infectious Disease, 18, 523–525.
35. Randall LP, Kirchner M, Teale CJ, Coldham NG, Liebana E and Clifton-Hadley F, 2009. Evaluation of CHROMagar CTX, a novel medium for isolating CTX-M-ESBL-positive Enterobacteriaceae while inhibiting AmpC-producing strains. Journal of Antimicrobial Chemotherapy, 63, 302–308.
36. Saladin M, Cao VT, Lambert T, Donay JL, Herrmann JL, Ould-Hocine Z, Verdet C, Delisle F, Philippon A and Arlet G, 2002. Diversity of CTX-M beta-lactamases and their promoter regions from Enterobacteriaceae isolated in three Parisian hospitals. FEMS Microbiology Letters, 209, 161–168.
37. Schonberg-Norio D, Hanninen ML, Katila ML, Kaukoranta SS, Koskela M, Eerola E, Uksila J, Pajarre S and Rautelin H, 2006, Activities of telithromycin, erythromycin, fluoroquinolones, and doxycycline against Campylobacter strains isolated from Finnish subjects. Antimicrobial Agents and Chemotherapy, 50, 1086–1088.
38. Sjolund-Karlsson M, Joyce K, Blickenstaff K, Ball T, Haro J, Medalla FM, Fedorka-Cray P, Zhao S, Crump JA, Whichard JM, 2011. Antimicrobial susceptibility to azithromycin among Salmonella enterica isolates from the United States. Antimicrobial Agents and Chemotherapy, 55, 3985–3989.
39. Smet A, Martel A, Persoons D, Dewulf J, Heyndrickx M, Herman L, Haesebrouck F and Butaye P, 2010. Broad-spectrum beta-lactamases among Enterobacteriaceae of animal origin: molecular aspects, mobility and impact on public health. FEMS Microbiological. Review, 34, 295–316.
40. Walther-Rasmussen J. and Høiby, 2006. N.OXA-type Carbapenemases. Journal of Antimicrobial Chemotherapy, 57, 373–383.
41. Wasyl D and Hoszowski A, 2012. First isolation of ESBL-producing Salmonella and emergence of multiresistant Salmonella Kentucky in turkey in Poland. Food Research International, 45, 958–961.
42. Woodford N, Turton JF and Livemore DM, 2011. Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiological Review, 35, 736–755.
43. Zhao S, Young SR, Tong E, Abbott JW, Womack N, Friedman SL and McDermott PF, 2010. Antimicrobial resistance of Campylobacter isolates from retail meat in the United States between 2002 and 2007. Applied Environmental Microbiology, 76, 7949–7956.