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Volumn 46, Issue 3, 2017, Pages 488-503

Integrative Proteomics and Phosphoproteomics Profiling Reveals Dynamic Signaling Networks and Bioenergetics Pathways Underlying T Cell Activation

Author keywords

glycolysis; kinase; mitochondria; mTORC1; phosphoproteomics; proteomics; quiescence exit; systems biology; systems immunology; T cell

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL ENZYME; PHOSPHOPROTEOME; PHOSPHOTRANSFERASE; PROTEOME; T LYMPHOCYTE RECEPTOR; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; COX10 PROTEIN, MOUSE; LYMPHOCYTE ANTIGEN RECEPTOR; MEMBRANE PROTEIN; TRANSFERASE;

EID: 85014720851     PISSN: 10747613     EISSN: 10974180     Source Type: Journal    
DOI: 10.1016/j.immuni.2017.02.010     Document Type: Article
Times cited : (268)

References (39)
  • 1
    • 84907069550 scopus 로고    scopus 로고
    • Mechanistic target of rapamycin inhibition extends cellular lifespan in dendritic cells by preserving mitochondrial function
    • Amiel, E., Everts, B., Fritz, D., Beauchamp, S., Ge, B., Pearce, E.L., Pearce, E.J., Mechanistic target of rapamycin inhibition extends cellular lifespan in dendritic cells by preserving mitochondrial function. J. Immunol. 193 (2014), 2821–2830.
    • (2014) J. Immunol. , vol.193 , pp. 2821-2830
    • Amiel, E.1    Everts, B.2    Fritz, D.3    Beauchamp, S.4    Ge, B.5    Pearce, E.L.6    Pearce, E.J.7
  • 2
    • 82255175259 scopus 로고    scopus 로고
    • Strategies to discover regulatory circuits of the mammalian immune system
    • Amit, I., Regev, A., Hacohen, N., Strategies to discover regulatory circuits of the mammalian immune system. Nat. Rev. Immunol. 11 (2011), 873–880.
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 873-880
    • Amit, I.1    Regev, A.2    Hacohen, N.3
  • 3
  • 4
    • 84979518589 scopus 로고    scopus 로고
    • MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
    • Calvo, S.E., Clauser, K.R., Mootha, V.K., MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins. Nucleic Acids Res. 44:D1 (2016), D1251–D1257.
    • (2016) Nucleic Acids Res. , vol.44 , Issue.D1 , pp. D1251-D1257
    • Calvo, S.E.1    Clauser, K.R.2    Mootha, V.K.3
  • 6
    • 84860237060 scopus 로고    scopus 로고
    • Regulation and function of mTOR signalling in T cell fate decisions
    • Chi, H., Regulation and function of mTOR signalling in T cell fate decisions. Nat. Rev. Immunol. 12 (2012), 325–338.
    • (2012) Nat. Rev. Immunol. , vol.12 , pp. 325-338
    • Chi, H.1
  • 7
    • 36749081539 scopus 로고    scopus 로고
    • mTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex
    • Cunningham, J.T., Rodgers, J.T., Arlow, D.H., Vazquez, F., Mootha, V.K., Puigserver, P., mTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex. Nature 450 (2007), 736–740.
    • (2007) Nature , vol.450 , pp. 736-740
    • Cunningham, J.T.1    Rodgers, J.T.2    Arlow, D.H.3    Vazquez, F.4    Mootha, V.K.5    Puigserver, P.6
  • 9
    • 84897425951 scopus 로고    scopus 로고
    • Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals
    • Gilardi, F., Migliavacca, E., Naldi, A., Baruchet, M., Canella, D., Le Martelot, G., Guex, N., Desvergne, B., CycliX Consortium. Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals. PLoS Genet., 10, 2014, e1004155.
    • (2014) PLoS Genet. , vol.10 , pp. e1004155
    • Gilardi, F.1    Migliavacca, E.2    Naldi, A.3    Baruchet, M.4    Canella, D.5    Le Martelot, G.6    Guex, N.7    Desvergne, B.8
  • 10
    • 84860380755 scopus 로고    scopus 로고
    • CD8 T cell quiescence revisited
    • Hamilton, S.E., Jameson, S.C., CD8 T cell quiescence revisited. Trends Immunol. 33 (2012), 224–230.
    • (2012) Trends Immunol. , vol.33 , pp. 224-230
    • Hamilton, S.E.1    Jameson, S.C.2
  • 13
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen, R., Greenbaum, D., Gerstein, M., Relating whole-genome expression data with protein-protein interactions. Genome Res. 12 (2002), 37–46.
    • (2002) Genome Res. , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 15
    • 40049099114 scopus 로고    scopus 로고
    • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
    • Langfelder, P., Zhang, B., Horvath, S., Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 24 (2008), 719–720.
    • (2008) Bioinformatics , vol.24 , pp. 719-720
    • Langfelder, P.1    Zhang, B.2    Horvath, S.3
  • 16
    • 84924364344 scopus 로고    scopus 로고
    • Gene expression. Statistics requantitates the central dogma
    • Li, J.J., Biggin, M.D., Gene expression. Statistics requantitates the central dogma. Science 347 (2015), 1066–1067.
    • (2015) Science , vol.347 , pp. 1066-1067
    • Li, J.J.1    Biggin, M.D.2
  • 18
    • 84977160688 scopus 로고    scopus 로고
    • JUMPg: an integrative proteogenomics pipeline identifying unannotated proteins in human brain and cancer cells
    • Li, Y., Wang, X., Cho, J.H., Shaw, T.I., Wu, Z., Bai, B., Wang, H., Zhou, S., Beach, T.G., Wu, G., et al. JUMPg: an integrative proteogenomics pipeline identifying unannotated proteins in human brain and cancer cells. J. Proteome Res. 15 (2016), 2309–2320.
    • (2016) J. Proteome Res. , vol.15 , pp. 2309-2320
    • Li, Y.1    Wang, X.2    Cho, J.H.3    Shaw, T.I.4    Wu, Z.5    Bai, B.6    Wang, H.7    Zhou, S.8    Beach, T.G.9    Wu, G.10
  • 19
    • 84964321113 scopus 로고    scopus 로고
    • On the dependency of cellular protein levels on mRNA abundance
    • Liu, Y., Beyer, A., Aebersold, R., On the dependency of cellular protein levels on mRNA abundance. Cell 165 (2016), 535–550.
    • (2016) Cell , vol.165 , pp. 535-550
    • Liu, Y.1    Beyer, A.2    Aebersold, R.3
  • 21
    • 84874232489 scopus 로고    scopus 로고
    • The coming age of complete, accurate, and ubiquitous proteomes
    • Mann, M., Kulak, N.A., Nagaraj, N., Cox, J., The coming age of complete, accurate, and ubiquitous proteomes. Mol. Cell 49 (2013), 583–590.
    • (2013) Mol. Cell , vol.49 , pp. 583-590
    • Mann, M.1    Kulak, N.A.2    Nagaraj, N.3    Cox, J.4
  • 27
    • 84907886513 scopus 로고    scopus 로고
    • Tsc1 promotes the differentiation of memory CD8+ T cells via orchestrating the transcriptional and metabolic programs
    • Shrestha, S., Yang, K., Wei, J., Karmaus, P.W., Neale, G., Chi, H., Tsc1 promotes the differentiation of memory CD8+ T cells via orchestrating the transcriptional and metabolic programs. Proc. Natl. Acad. Sci. USA 111 (2014), 14858–14863.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 14858-14863
    • Shrestha, S.1    Yang, K.2    Wei, J.3    Karmaus, P.W.4    Neale, G.5    Chi, H.6
  • 29
    • 84868148725 scopus 로고    scopus 로고
    • Failure of amino acid homeostasis causes cell death following proteasome inhibition
    • Suraweera, A., Münch, C., Hanssum, A., Bertolotti, A., Failure of amino acid homeostasis causes cell death following proteasome inhibition. Mol. Cell 48 (2012), 242–253.
    • (2012) Mol. Cell , vol.48 , pp. 242-253
    • Suraweera, A.1    Münch, C.2    Hanssum, A.3    Bertolotti, A.4
  • 30
    • 84921277367 scopus 로고    scopus 로고
    • Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome
    • Tan, H., Wu, Z., Wang, H., Bai, B., Li, Y., Wang, X., Zhai, B., Beach, T.G., Peng, J., Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome. Proteomics 15 (2015), 500–507.
    • (2015) Proteomics , vol.15 , pp. 500-507
    • Tan, H.1    Wu, Z.2    Wang, H.3    Bai, B.4    Li, Y.5    Wang, X.6    Zhai, B.7    Beach, T.G.8    Peng, J.9
  • 32
    • 84928255180 scopus 로고    scopus 로고
    • JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy
    • Wang, X., Li, Y., Wu, Z., Wang, H., Tan, H., Peng, J., JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy. Mol. Cell. Proteomics 13 (2014), 3663–3673.
    • (2014) Mol. Cell. Proteomics , vol.13 , pp. 3663-3673
    • Wang, X.1    Li, Y.2    Wu, Z.3    Wang, H.4    Tan, H.5    Peng, J.6
  • 33
    • 84922650471 scopus 로고    scopus 로고
    • Systematic optimization of long gradient chromatography mass spectrometry for deep analysis of brain proteome
    • Wang, H., Yang, Y., Li, Y., Bai, B., Wang, X., Tan, H., Liu, T., Beach, T.G., Peng, J., Wu, Z., Systematic optimization of long gradient chromatography mass spectrometry for deep analysis of brain proteome. J. Proteome Res. 14 (2015), 829–838.
    • (2015) J. Proteome Res. , vol.14 , pp. 829-838
    • Wang, H.1    Yang, Y.2    Li, Y.3    Bai, B.4    Wang, X.5    Tan, H.6    Liu, T.7    Beach, T.G.8    Peng, J.9    Wu, Z.10
  • 34
    • 79961013401 scopus 로고    scopus 로고
    • Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes
    • Wu, R., Dephoure, N., Haas, W., Huttlin, E.L., Zhai, B., Sowa, M.E., Gygi, S.P., Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes. Mol. Cell. Proteomics, 10, 2011, 009654.
    • (2011) Mol. Cell. Proteomics , vol.10 , pp. 009654
    • Wu, R.1    Dephoure, N.2    Haas, W.3    Huttlin, E.L.4    Zhai, B.5    Sowa, M.E.6    Gygi, S.P.7
  • 36
    • 80051997049 scopus 로고    scopus 로고
    • The tumor suppressor Tsc1 enforces quiescence of naive T cells to promote immune homeostasis and function
    • Yang, K., Neale, G., Green, D.R., He, W., Chi, H., The tumor suppressor Tsc1 enforces quiescence of naive T cells to promote immune homeostasis and function. Nat. Immunol. 12 (2011), 888–897.
    • (2011) Nat. Immunol. , vol.12 , pp. 888-897
    • Yang, K.1    Neale, G.2    Green, D.R.3    He, W.4    Chi, H.5
  • 37
    • 84890137621 scopus 로고    scopus 로고
    • T cell exit from quiescence and differentiation into Th2 cells depend on Raptor-mTORC1-mediated metabolic reprogramming
    • Yang, K., Shrestha, S., Zeng, H., Karmaus, P.W., Neale, G., Vogel, P., Guertin, D.A., Lamb, R.F., Chi, H., T cell exit from quiescence and differentiation into Th2 cells depend on Raptor-mTORC1-mediated metabolic reprogramming. Immunity 39 (2013), 1043–1056.
    • (2013) Immunity , vol.39 , pp. 1043-1056
    • Yang, K.1    Shrestha, S.2    Zeng, H.3    Karmaus, P.W.4    Neale, G.5    Vogel, P.6    Guertin, D.A.7    Lamb, R.F.8    Chi, H.9
  • 38
    • 84925581414 scopus 로고    scopus 로고
    • GABP transcription factor (nuclear respiratory factor 2) is required for mitochondrial biogenesis
    • Yang, Z.F., Drumea, K., Mott, S., Wang, J., Rosmarin, A.G., GABP transcription factor (nuclear respiratory factor 2) is required for mitochondrial biogenesis. Mol. Cell. Biol. 34 (2014), 3194–3201.
    • (2014) Mol. Cell. Biol. , vol.34 , pp. 3194-3201
    • Yang, Z.F.1    Drumea, K.2    Mott, S.3    Wang, J.4    Rosmarin, A.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.