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Volumn 5, Issue , 2017, Pages 329-351

Taming the Past: Ancient DNA and the Study of Animal Domestication

Author keywords

Agriculture; Ancient DNA; Domestication; Genetics; Livestock; Selection

Indexed keywords

ANCIENT DNA;

EID: 85013414544     PISSN: 21658102     EISSN: 21658110     Source Type: Journal    
DOI: 10.1146/annurev-animal-022516-022747     Document Type: Review
Times cited : (97)

References (160)
  • 2
    • 84855716932 scopus 로고    scopus 로고
    • Cultivation and domestication had multiple origins: Arguments against the core area hypothesis for the origins of agriculture in the Near East
    • FullerDQ, WillcoxG, Allaby RG. 2011. Cultivation and domestication had multiple origins: arguments against the core area hypothesis for the origins of agriculture in the Near East. World Archaeol. 43:628-52
    • (2011) World Archaeol , vol.43 , pp. 628-652
    • Fuller, D.Q.1    Willcox, G.2    Allaby, R.G.3
  • 4
    • 79960936852 scopus 로고    scopus 로고
    • When the world's population took off: The springboard of the Neolithic Demographic Transition
    • Bocquet-Appel JP. 2011. When the world's population took off: the springboard of the Neolithic Demographic Transition. Science 333:560-61
    • (2011) Science , vol.333 , pp. 560-561
    • Bocquet-Appel, J.P.1
  • 6
    • 84925430802 scopus 로고    scopus 로고
    • Core questions in domestication research
    • Zeder MA. 2015. Core questions in domestication research. PNAS 112:3191-98
    • (2015) PNAS , vol.112 , pp. 3191-3198
    • Zeder, M.A.1
  • 7
    • 84877867718 scopus 로고    scopus 로고
    • A contextual approach to the emergence of agriculture in Southwest Asia reconstructing early Neolithic plant-food production
    • Asouti E, Fuller DQ. 2013. A contextual approach to the emergence of agriculture in Southwest Asia reconstructing early Neolithic plant-food production. Curr. Anthropol. 54:299-345
    • (2013) Curr. Anthropol , vol.54 , pp. 299-345
    • Asouti, E.1    Fuller, D.Q.2
  • 8
    • 78650309029 scopus 로고    scopus 로고
    • Meta-analysis of zooarchaeological data from SW Asia and SE Europe provides insight into the origins and spread of animal husbandry
    • Conolly J, Colledge S, Dobney K, Vigne J-D, Peters J, et al. 2011. Meta-analysis of zooarchaeological data from SW Asia and SE Europe provides insight into the origins and spread of animal husbandry. J. Archaeol. Sci. 38:538-45
    • (2011) J. Archaeol. Sci , vol.38 , pp. 538-545
    • Conolly, J.1    Colledge, S.2    Dobney, K.3    Vigne, J.-D.4    Peters, J.5
  • 9
    • 33845486361 scopus 로고    scopus 로고
    • Agricultural origins and frontiers in South Asia: A working synthesis
    • Fuller DQ. 2006. Agricultural origins and frontiers in South Asia: a working synthesis. J. World Prehist. 20:1-86
    • (2006) J. World Prehist , vol.20 , pp. 1-86
    • Fuller, D.Q.1
  • 10
    • 84880514467 scopus 로고    scopus 로고
    • A population genetics view of animal domestication
    • Larson G, Burger J. 2013. A population genetics view of animal domestication. Trends Genet. 29:197-205
    • (2013) Trends Genet , vol.29 , pp. 197-205
    • Larson, G.1    Burger, J.2
  • 11
    • 84965142891 scopus 로고    scopus 로고
    • Holocene cultural history of Red jungle fowl (Gallus gallus) and its domestic descendant in East Asia
    • Peters J, Lebrasseur O, Deng H, Larson G. 2016. Holocene cultural history of Red jungle fowl (Gallus gallus) and its domestic descendant in East Asia. Quat. Sci. Rev. 142:102-19
    • (2016) Quat. Sci. Rev , vol.142 , pp. 102-119
    • Peters, J.1    Lebrasseur, O.2    Deng, H.3    Larson, G.4
  • 16
    • 33646894651 scopus 로고    scopus 로고
    • Genetics and animal domestication: New windows on an elusive process
    • Dobney K, Larson G. 2006. Genetics and animal domestication: new windows on an elusive process. J. Zool. 269:261-71
    • (2006) J. Zool , vol.269 , pp. 261-271
    • Dobney, K.1    Larson, G.2
  • 17
    • 84988625120 scopus 로고    scopus 로고
    • From wild animals to domestic pets, an evolutionary view of domestication
    • ed. JC Avise, FJ Ayala, . Washington, DC: Natl. Acad. Press
    • Driscoll CA, MacDonald DW, O'Brien SJ. 2009. From wild animals to domestic pets, an evolutionary view of domestication. In In the Light of Evolution III: Two Centuries of Darwin, ed. JC Avise, FJ Ayala, pp. 89-109. Washington, DC: Natl. Acad. Press
    • (2009) Light of Evolution III: Two Centuries of Darwin , pp. 89-109
    • Driscoll, C.A.1    MacDonald, D.W.2    O'Brien, S.J.3
  • 18
    • 84906241369 scopus 로고    scopus 로고
    • Behavior genetics and the domestication of animals
    • Jensen P. 2014. Behavior genetics and the domestication of animals. Annu. Rev. Anim. Biosci. 2:85-104
    • (2014) Annu. Rev. Anim. Biosci , vol.2 , pp. 85-104
    • Jensen, P.1
  • 19
    • 84904266596 scopus 로고    scopus 로고
    • The domestication syndrome in mammals: A unified explanation based on neural crest cell behavior and genetics
    • Wilkins AS, Wrangham RW, Fitch WT. 2014. The domestication syndrome in mammals: a unified explanation based on neural crest cell behavior and genetics. Genetics 197:795-808
    • (2014) Genetics , vol.197 , pp. 795-808
    • Wilkins, A.S.1    Wrangham, R.W.2    Fitch, W.T.3
  • 20
    • 68949198769 scopus 로고    scopus 로고
    • Genetic architecture of tameness in a rat model of animal domestication
    • Albert FW, Carlborg O, Plyusnina I, Besnier F, Hedwig D, et al. 2009. Genetic architecture of tameness in a rat model of animal domestication. Genetics 182:541-54
    • (2009) Genetics , vol.182 , pp. 541-554
    • Albert, F.W.1    Carlborg, O.2    Plyusnina, I.3    Besnier, F.4    Hedwig, D.5
  • 21
    • 65249176311 scopus 로고    scopus 로고
    • Animal evolution during domestication: The domesticated fox as a model
    • Trut L, Oskina I, Kharlamova A. 2009. Animal evolution during domestication: the domesticated fox as a model. Bioessays 31:349-60
    • (2009) Bioessays , vol.31 , pp. 349-360
    • Trut, L.1    Oskina, I.2    Kharlamova, A.3
  • 22
    • 84863915324 scopus 로고    scopus 로고
    • Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection
    • Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, et al. 2011. Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity 107:205-14
    • (2011) Heredity , vol.107 , pp. 205-214
    • Albert, F.W.1    Hodges, E.2    Jensen, J.D.3    Besnier, F.4    Xuan, Z.5
  • 24
    • 84908627915 scopus 로고    scopus 로고
    • Genetic influences on brain gene expression in rats selected for tameness and aggression
    • Heyne HO, Lautenschlager S, Nelson R, Besnier F, Rotival M, et al. 2014. Genetic influences on brain gene expression in rats selected for tameness and aggression. Genetics 198:1277-90
    • (2014) Genetics , vol.198 , pp. 1277-1290
    • Heyne, H.O.1    Lautenschlager, S.2    Nelson, R.3    Besnier, F.4    Rotival, M.5
  • 25
    • 84866914794 scopus 로고    scopus 로고
    • A comparison of brain gene expression levels in domesticated and wild animals
    • Albert FW, Somel M, CarneiroM, Aximu-Petri A, HalbwaxM, et al. 2012. A comparison of brain gene expression levels in domesticated and wild animals. PLOS Genet. 8:e1002962
    • (2012) PLOS Genet , vol.8 , pp. e1002962
    • Albert, F.W.1    Somel, M.2    Carneiro, M.3    Aximu-Petri, A.4    Halbwax, M.5
  • 26
    • 84907190357 scopus 로고    scopus 로고
    • Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
    • Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alfoldi J, et al. 2014. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science 345:1074-79
    • (2014) Science , vol.345 , pp. 1074-1079
    • Carneiro, M.1    Rubin, C.J.2    Di Palma, F.3    Albert, F.W.4    Alfoldi, J.5
  • 28
    • 84921726735 scopus 로고    scopus 로고
    • Major transitions in human evolution revisited: A tribute to ancient DNA
    • Ermini L, Der Sarkissian C, Willerslev E, Orlando L. 2015. Major transitions in human evolution revisited: a tribute to ancient DNA. J. Hum. Evol. 79:4-20
    • (2015) J. Hum. Evol , vol.79 , pp. 4-20
    • Ermini, L.1    Der Sarkissian, C.2    Willerslev, E.3    Orlando, L.4
  • 29
    • 84906818554 scopus 로고    scopus 로고
    • Toward a new history and geography of human genes informed by ancient DNA
    • Pickrell JK, Reich D. 2014. Toward a new history and geography of human genes informed by ancient DNA. Trends Genet. 30:377-89
    • (2014) Trends Genet , vol.30 , pp. 377-389
    • Pickrell, J.K.1    Reich, D.2
  • 30
    • 85019664497 scopus 로고    scopus 로고
    • Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
    • Park SD, Magee DA, McGettigan PA, Teasdale MD, Edwards CJ, et al. 2015. Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle. Genome Biol. 16:234
    • (2015) Genome Biol , vol.16 , pp. 234
    • Park, S.D.1    Magee, D.A.2    McGettigan, P.A.3    Teasdale, M.D.4    Edwards, C.J.5
  • 32
    • 84943405119 scopus 로고    scopus 로고
    • Evolutionary genomics and conservation of the endangered Przewalski's horse
    • Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, et al. 2015. Evolutionary genomics and conservation of the endangered Przewalski's horse. Curr. Biol. 25:2577-83
    • (2015) Curr. Biol , vol.25 , pp. 2577-2583
    • Der Sarkissian, C.1    Ermini, L.2    Schubert, M.3    Yang, M.A.4    Librado, P.5
  • 33
    • 84950128094 scopus 로고    scopus 로고
    • Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments
    • Librado P, Der Sarkissian C, Ermini L, Schubert M, Jonsson H, et al. 2015. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. PNAS 112:E6889-97
    • (2015) PNAS , vol.112 , pp. E6889-E6897
    • Librado, P.1    Der Sarkissian, C.2    Ermini, L.3    Schubert, M.4    Jonsson, H.5
  • 34
    • 84930929780 scopus 로고    scopus 로고
    • Ancient Wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds
    • Skoglund P, Ersmark E, Palkopoulou E, Dalen L. 2015. Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds. Curr. Biol. 25:1515-19
    • (2015) Curr. Biol , vol.25 , pp. 1515-1519
    • Skoglund, P.1    Ersmark, E.2    Palkopoulou, E.3    Dalen, L.4
  • 35
    • 84924384865 scopus 로고    scopus 로고
    • Prehistoric genomes reveal the genetic foundation and cost of horse domestication
    • Schubert M, Jonsson H, Chang D, Der Sarkissian C, Ermini L, et al. 2014. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. PNAS 111:E5661-69
    • (2014) PNAS , vol.111 , pp. E5661-E5669
    • Schubert, M.1    Jonsson, H.2    Chang, D.3    Der Sarkissian, C.4    Ermini, L.5
  • 36
    • 84879888373 scopus 로고    scopus 로고
    • Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
    • Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, et al. 2013. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 499:74-78
    • (2013) Nature , vol.499 , pp. 74-78
    • Orlando, L.1    Ginolhac, A.2    Zhang, G.3    Froese, D.4    Albrechtsen, A.5
  • 37
    • 0021688630 scopus 로고
    • DNA sequences from the quagga, an extinct member of the horse family
    • Higuchi R, Bowman B, Freiberger M, Ryder OA, Wilson AC. 1984. DNA sequences from the quagga, an extinct member of the horse family. Nature 312:282-84
    • (1984) Nature , vol.312 , pp. 282-284
    • Higuchi, R.1    Bowman, B.2    Freiberger, M.3    Ryder, O.A.4    Wilson, A.C.5
  • 38
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, et al. 1985. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230:1350-54
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5
  • 39
    • 84968903135 scopus 로고    scopus 로고
    • Coming of age: Ten years of next-generation sequencing technologies
    • Goodwin S, McPherson JD, McCombie WR. 2016. Coming of age: ten years of next-generation sequencing technologies. Nat. Rev. Genet. 17:333-51
    • (2016) Nat. Rev. Genet , vol.17 , pp. 333-351
    • Goodwin, S.1    McPherson, J.D.2    McCombie, W.R.3
  • 40
    • 84856276051 scopus 로고    scopus 로고
    • PCR amplification, cloning, and sequencing of ancient DNA
    • Fulton TL, Stiller M. 2012. PCR amplification, cloning, and sequencing of ancient DNA. Methods Mol. Biol. 840:111-19
    • (2012) Methods Mol. Biol , vol.840 , pp. 111-119
    • Fulton, T.L.1    Stiller, M.2
  • 41
    • 0025230558 scopus 로고
    • DNA damage promotes jumping between templates during enzymatic amplification
    • Paabo S, Irwin DM, Wilson AC. 1990. DNA damage promotes jumping between templates during enzymatic amplification. J. Biol. Chem. 265:4718-21
    • (1990) J. Biol. Chem , vol.265 , pp. 4718-4721
    • Paabo, S.1    Irwin, D.M.2    Wilson, A.C.3
  • 43
    • 33745358864 scopus 로고    scopus 로고
    • Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments
    • Hansen AJ, Mitchell DL, Wiuf C, Paniker L, Brand TB, et al. 2006. Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Genetics 173:1175-79
    • (2006) Genetics , vol.173 , pp. 1175-1179
    • Hansen, A.J.1    Mitchell, D.L.2    Wiuf, C.3    Paniker, L.4    Brand, T.B.5
  • 44
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • HofreiterM, Jaenicke V, Serre D, vonHaeseler A, Paabo S. 2001. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29:4793-99
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    VonHaeseler, A.4    Paabo, S.5
  • 45
    • 84913598153 scopus 로고    scopus 로고
    • Using ancient DNA to understand evolutionary and ecological processes
    • Orlando L, Cooper A. 2014. Using ancient DNA to understand evolutionary and ecological processes. Annu. Rev. Ecol. Evol. Syst. 45:573-98
    • (2014) Annu. Rev. Ecol. Evol. Syst , vol.45 , pp. 573-598
    • Orlando, L.1    Cooper, A.2
  • 47
    • 36749025107 scopus 로고    scopus 로고
    • Amelanocortin 1 receptor allele suggests varying pigmentation among Neanderthals
    • Lalueza-FoxC, Rompler H, Caramelli D, Staubert C, CatalanoG, et al. 2007. Amelanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science 318:1453-55
    • (2007) Science , vol.318 , pp. 1453-1455
    • Lalueza-Fox, C.1    Rompler, H.2    Caramelli, D.3    Staubert, C.4    Catalano, G.5
  • 49
    • 56749119854 scopus 로고    scopus 로고
    • Sequencing the nuclear genome of the extinct woolly mammoth
    • MillerW, Drautz Di, Ratan A, Pusey B, Qi J, et al. 2008. Sequencing the nuclear genome of the extinct woolly mammoth. Nature 456:387-90
    • (2008) Nature , vol.456 , pp. 387-390
    • Miller, W.1    Drautz, D.I.2    Ratan, A.3    Pusey, B.4    Qi, J.5
  • 53
    • 84975744563 scopus 로고    scopus 로고
    • Early divergent strains of Yersinia pestis in Eurasia 5, 000 years ago
    • Rasmussen S, Allentoft ME, Nielsen K, Orlando L, Sikora M, et al. 2015. Early divergent strains of Yersinia pestis in Eurasia 5, 000 years ago. Cell 163:571-82
    • (2015) Cell , vol.163 , pp. 571-582
    • Rasmussen, S.1    Allentoft, M.E.2    Nielsen, K.3    Orlando, L.4    Sikora, M.5
  • 54
    • 84929607248 scopus 로고    scopus 로고
    • Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth
    • Palkopoulou E, Mallick S, Skoglund P, Enk J, Rohland N, et al. 2015. Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth. Curr. Biol. 25:1395-400
    • (2015) Curr. Biol , vol.25 , pp. 1395-1400
    • Palkopoulou, E.1    Mallick, S.2    Skoglund, P.3    Enk, J.4    Rohland, N.5
  • 55
    • 84937519443 scopus 로고    scopus 로고
    • Elephantid genomes reveal the molecular bases of woolly mammoth adaptations to the Arctic
    • Lynch VJ, Bedoya-Reina OC, Ratan A, Sulak M, Drautz-Moses Di, et al. 2015. Elephantid genomes reveal the molecular bases of woolly mammoth adaptations to the Arctic. Cell Rep. 12:217-28
    • (2015) Cell Rep , vol.12 , pp. 217-228
    • Lynch, V.J.1    Bedoya-Reina, O.C.2    Ratan, A.3    Sulak, M.4    Drautz-Moses, D.I.5
  • 56
    • 84927581406 scopus 로고    scopus 로고
    • Genome data from a sixteenth century pig illuminate modern breed relationships
    • Ramírez O, Burgos-Paz W, Casas E, Ballester M, Bianco E, et al. 2015. Genome data from a sixteenth century pig illuminate modern breed relationships. Heredity 114:175-84
    • (2015) Heredity , vol.114 , pp. 175-184
    • Ramírez, O.1    Burgos-Paz, W.2    Casas, E.3    Ballester, M.4    Bianco, E.5
  • 58
    • 84884624229 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
    • Dabney J, Knapp M, Glocke I, Gansauge MT, Weihmann A, et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. PNAS 110:15758-63
    • (2013) PNAS , vol.110 , pp. 15758-15763
    • Dabney, J.1    Knapp, M.2    Glocke, I.3    Gansauge, M.T.4    Weihmann, A.5
  • 60
    • 84875500588 scopus 로고    scopus 로고
    • Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
    • Gansauge MT, Meyer M. 2013. Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat. Protoc. 8:737-48
    • (2013) Nat. Protoc , vol.8 , pp. 737-748
    • Gansauge, M.T.1    Meyer, M.2
  • 61
    • 84907210065 scopus 로고    scopus 로고
    • Selective enrichment of damaged DNA molecules for ancient genome sequencing
    • Gansauge MT, Meyer M. 2014. Selective enrichment of damaged DNA molecules for ancient genome sequencing. Genome Res. 24:1543-49
    • (2014) Genome Res , vol.24 , pp. 1543-1549
    • Gansauge, M.T.1    Meyer, M.2
  • 62
    • 84938877820 scopus 로고    scopus 로고
    • Reducingmicrobial and human contamination in DNA extractions from ancient bones and teeth
    • Korlevic P, Gerber T, GansaugeMT, HajdinjakM, Nagel S, et al. 2015. Reducingmicrobial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques 59:87-93
    • (2015) Biotechniques , vol.59 , pp. 87-93
    • Korlevic, P.1    Gerber, T.2    Gansauge, M.T.3    Hajdinjak, M.4    Nagel, S.5
  • 65
    • 84899508956 scopus 로고    scopus 로고
    • Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
    • Schubert M, Ermini L, Der Sarkissian C, Jonsson H, Ginolhac A, et al. 2014. Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX. Nat. Protoc. 9:1056-82
    • (2014) Nat. Protoc , vol.9 , pp. 1056-1082
    • Schubert, M.1    Ermini, L.2    Der Sarkissian, C.3    Jonsson, H.4    Ginolhac, A.5
  • 66
    • 84879910635 scopus 로고    scopus 로고
    • MapDamage2. 0: Fast approximate Bayesian estimates of ancient DNA damage parameters
    • Jonsson H, Ginolhac A, Schubert M, Johnson PL, Orlando L. 2013. mapDamage2. 0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics 29:1682-84
    • (2013) Bioinformatics , vol.29 , pp. 1682-1684
    • Jonsson, H.1    Ginolhac, A.2    Schubert, M.3    Johnson, P.L.4    Orlando, L.5
  • 67
    • 84893850989 scopus 로고    scopus 로고
    • Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
    • Skoglund P, Northoff BH, Shunkov MV, Derevianko AP, Paabo S, et al. 2014. Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. PNAS 111:2229-34
    • (2014) PNAS , vol.111 , pp. 2229-2234
    • Skoglund, P.1    Northoff, B.H.2    Shunkov, M.V.3    Derevianko, A.P.4    Paabo, S.5
  • 69
    • 84899881782 scopus 로고    scopus 로고
    • Patterns of coding variation in the complete exomes of three Neandertals
    • Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, et al. 2014. Patterns of coding variation in the complete exomes of three Neandertals. PNAS 111:6666-71
    • (2014) PNAS , vol.111 , pp. 6666-6671
    • Castellano, S.1    Parra, G.2    Sánchez-Quinto, F.A.3    Racimo, F.4    Kuhlwilm, M.5
  • 70
    • 84914688940 scopus 로고    scopus 로고
    • Genome sequence of a 45, 000-year-old modern human from western Siberia
    • Fu Q, Li H, Moorjani P, Jay F, Slepchenko SM, et al. 2014. Genome sequence of a 45, 000-year-old modern human from western Siberia. Nature 514:445-49
    • (2014) Nature , vol.514 , pp. 445-449
    • Fu, Q.1    Li, H.2    Moorjani, P.3    Jay, F.4    Slepchenko, S.M.5
  • 71
    • 84890151805 scopus 로고    scopus 로고
    • Pulling out the 1%: Whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries
    • Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, et al. 2013. Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries. Am. J. Hum. Genet. 93:852-64
    • (2013) Am. J. Hum. Genet , vol.93 , pp. 852-864
    • Carpenter, M.L.1    Buenrostro, J.D.2    Valdiosera, C.3    Schroeder, H.4    Allentoft, M.E.5
  • 74
    • 84892572735 scopus 로고    scopus 로고
    • A mitochondrial genome sequence of a hominin from Sima de los Huesos
    • Meyer M, Fu Q, Aximu-Petri A, Glocke I, Nickel B, et al. 2014. A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature 505:403-6
    • (2014) Nature , vol.505 , pp. 403-406
    • Meyer, M.1    Fu, Q.2    Aximu-Petri, A.3    Glocke, I.4    Nickel, B.5
  • 75
    • 84889252671 scopus 로고    scopus 로고
    • Ancient DNA and population turnover in southern levantine pigs-Signature of the Sea Peoples migration?
    • Meiri M, Huchon D, Bar-Oz G, Boaretto E, Horwitz LK, et al. 2013. Ancient DNA and population turnover in southern levantine pigs-Signature of the Sea Peoples migration? Sci. Rep. 3:3035
    • (2013) Sci. Rep , vol.3 , pp. 3035
    • Meiri, M.1    Huchon, D.2    Bar-Oz, G.3    Boaretto, E.4    Horwitz, L.K.5
  • 76
    • 84974782833 scopus 로고    scopus 로고
    • Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary
    • Almathen F, Charruau P, Mohandesan E, Mwacharo JM, Orozco-terWengel P, et al. 2016. Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary. PNAS 113:6707-12
    • (2016) PNAS , vol.113 , pp. 6707-6712
    • Almathen, F.1    Charruau, P.2    Mohandesan, E.3    Mwacharo, J.M.4    Orozco-TerWengel, P.5
  • 77
    • 33745040266 scopus 로고    scopus 로고
    • Geographic distribution of an extinct equid (Equus hydruntinus: Mammalia, Equidae) revealed by morphological and genetical analyses of fossils
    • Orlando L, Mashkour M, Burke A, Douady CJ, Eisenmann V, Hanni C. 2006. Geographic distribution of an extinct equid (Equus hydruntinus: Mammalia, Equidae) revealed by morphological and genetical analyses of fossils. Mol. Ecol. 15:2083-93
    • (2006) Mol. Ecol , vol.15 , pp. 2083-2093
    • Orlando, L.1    Mashkour, M.2    Burke, A.3    Douady, C.J.4    Eisenmann, V.5    Hanni, C.6
  • 78
    • 84928911755 scopus 로고    scopus 로고
    • Unexpected evolutionary diversity in a recently extinct Caribbean mammal radiation
    • Brace S, Turvey ST, Weksler M, Hoogland ML, Barnes I. 2015. Unexpected evolutionary diversity in a recently extinct Caribbean mammal radiation. Proc. Biol. Sci. 282:20142371
    • (2015) Proc. Biol. Sci , vol.282 , pp. 20142371
    • Brace, S.1    Turvey, S.T.2    Weksler, M.3    Hoogland, M.L.4    Barnes, I.5
  • 80
    • 84978900741 scopus 로고    scopus 로고
    • Early Neolithic genomes from the eastern Fertile Crescent
    • Broushaki F, Thomas MG, Link V, López S, van Dorp L, et al. 2016. Early Neolithic genomes from the eastern Fertile Crescent. Science 353:499-503
    • (2016) Science , vol.353 , pp. 499-503
    • Broushaki, F.1    Thomas, M.G.2    Link, V.3    López, S.4    Van Dorp, L.5
  • 82
    • 84984999386 scopus 로고    scopus 로고
    • Genomic insights into the origin of farming in the ancient Near East
    • Lazaridis I, NadelD, Rollefson G, Merrett DC, RohlandN, et al. 2016. Genomic insights into the origin of farming in the ancient Near East. Nature 536:419-24
    • (2016) Nature , vol.536 , pp. 419-424
    • Lazaridis, I.1    Nadel, D.2    Rollefson, G.3    Merrett, D.C.4    Rohland, N.5
  • 83
    • 84959520586 scopus 로고    scopus 로고
    • Genomic evidence establishes Anatolia as the source of the European Neolithic gene pool
    • Omrak A, Günther T, Valdiosera C, Svensson EM, Malmström H, et al. 2016. Genomic evidence establishes Anatolia as the source of the European Neolithic gene pool. Curr. Biol. 26:270-75
    • (2016) Curr. Biol , vol.26 , pp. 270-275
    • Omrak, A.1    Günther, T.2    Valdiosera, C.3    Svensson, E.M.4    Malmström, H.5
  • 84
    • 84939165177 scopus 로고    scopus 로고
    • Optimal ancient DNA yields from the inner ear part of the human petrous bone
    • Pinhasi R, Fernandes D, Sirak K, Novak M, Connell S, et al. 2015. Optimal ancient DNA yields from the inner ear part of the human petrous bone. PLOS ONE 10:e0129102
    • (2015) PLOS ONE , vol.10 , pp. e0129102
    • Pinhasi, R.1    Fernandes, D.2    Sirak, K.3    Novak, M.4    Connell, S.5
  • 85
    • 0001060174 scopus 로고
    • Studies on the origin of cultivated plants
    • VavilovN. 1926. Studies on the origin of cultivated plants. Bull. Appl. Bot. Genet. Plant Breed. 16:139-248
    • (1926) Bull. Appl. Bot. Genet. Plant Breed , vol.16 , pp. 139-248
    • Vavilov, N.1
  • 86
    • 20144362963 scopus 로고    scopus 로고
    • Worldwide phylogeography of wild boar reveals multiple centers of pig domestication
    • Larson G, Dobney K, Albarella U, Fang M, Matisoo-Smith E, et al. 2005. Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science 307:1618-21
    • (2005) Science , vol.307 , pp. 1618-1621
    • Larson, G.1    Dobney, K.2    Albarella, U.3    Fang, M.4    Matisoo-Smith, E.5
  • 87
    • 0030822807 scopus 로고    scopus 로고
    • Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus)
    • MacHugh DE, Shriver MD, Loftus RT, Cunningham P, Bradley DG. 1997. Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146:1071-86
    • (1997) Genetics , vol.146 , pp. 1071-1086
    • MacHugh, D.E.1    Shriver, M.D.2    Loftus, R.T.3    Cunningham, P.4    Bradley, D.G.5
  • 88
  • 89
    • 34848916115 scopus 로고    scopus 로고
    • Ancient DNA, pig domestication, and the spread of the Neolithic into Europe
    • Larson G, Albarella U, Dobney K, Rowley-Conwy P, Schibler J, et al. 2007. Ancient DNA, pig domestication, and the spread of the Neolithic into Europe. PNAS 104:15276-81
    • (2007) PNAS , vol.104 , pp. 15276-15281
    • Larson, G.1    Albarella, U.2    Dobney, K.3    Rowley-Conwy, P.4    Schibler, J.5
  • 90
    • 77952366354 scopus 로고    scopus 로고
    • Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA
    • Larson G, Liu R, Zhao X, Yuan J, Fuller D, et al. 2010. Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA. PNAS 107:7686-91
    • (2010) PNAS , vol.107 , pp. 7686-7691
    • Larson, G.1    Liu, R.2    Zhao, X.3    Yuan, J.4    Fuller, D.5
  • 92
    • 84929924076 scopus 로고    scopus 로고
    • The genetic prehistory of domesticated cattle from their origin to the spread across Europe
    • ScheuA, PowellA, BollonginoR, Vigne JD, TressetA, et al. 2015. The genetic prehistory of domesticated cattle from their origin to the spread across Europe. BMC Genet. 16:54
    • (2015) BMC Genet , vol.16 , pp. 54
    • Scheu, A.1    Powell, A.2    Bollongino, R.3    Vigne, J.D.4    Tresset, A.5
  • 93
    • 84857124895 scopus 로고    scopus 로고
    • Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication
    • Achilli A, Olivieri A, Soares P, Lancioni H, Hooshiar Kashani B, et al. 2012. Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication. PNAS 109:2449-54
    • (2012) PNAS , vol.109 , pp. 2449-2454
    • Achilli, A.1    Olivieri, A.2    Soares, P.3    Lancioni, H.4    Hooshiar Kashani, B.5
  • 95
    • 84875580696 scopus 로고    scopus 로고
    • Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics
    • Ottoni C, Flink LG, Evin A, Georg C, De Cupere B, et al. 2013. Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol. Biol. Evol. 30:824-32
    • (2013) Mol. Biol. Evol , vol.30 , pp. 824-832
    • Ottoni, C.1    Flink, L.G.2    Evin, A.3    Georg, C.4    De Cupere, B.5
  • 96
    • 84916216992 scopus 로고    scopus 로고
    • Unravelling the complexity of domestication: A case study using morphometrics and ancient DNA analyses of archaeological pigs from Romania
    • Evin A, Flink LG, Balasescu A, Popovici D, Andreescu R, et al. 2015. Unravelling the complexity of domestication: a case study using morphometrics and ancient DNA analyses of archaeological pigs from Romania. Philos. Trans. R. Soc. Lond. B Biol. Sci. 370:20130616
    • (2015) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.370 , pp. 20130616
    • Evin, A.1    Flink, L.G.2    Balasescu, A.3    Popovici, D.4    Andreescu, R.5
  • 97
    • 84887783184 scopus 로고    scopus 로고
    • Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs
    • Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, et al. 2013. Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science 342:871-74
    • (2013) Science , vol.342 , pp. 871-874
    • Thalmann, O.1    Shapiro, B.2    Cui, P.3    Schuenemann, V.J.4    Sawyer, S.K.5
  • 98
    • 84946595516 scopus 로고    scopus 로고
    • Genetic structure in village dogs reveals a Central Asian domestication origin
    • Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, et al. 2015. Genetic structure in village dogs reveals a Central Asian domestication origin. PNAS 112:13639-44
    • (2015) PNAS , vol.112 , pp. 13639-13644
    • Shannon, L.M.1    Boyko, R.H.2    Castelhano, M.3    Corey, E.4    Hayward, J.J.5
  • 99
    • 84953360034 scopus 로고    scopus 로고
    • Out of southern East Asia: The natural history of domestic dogs across the world
    • Wang GD, Zhai W, Yang HC, Wang L, Zhong L, et al. 2016. Out of southern East Asia: the natural history of domestic dogs across the world. Cell Res. 26:21-33
    • (2016) Cell Res , vol.26 , pp. 21-33
    • Wang, G.D.1    Zhai, W.2    Yang, H.C.3    Wang, L.4    Zhong, L.5
  • 100
    • 41849099699 scopus 로고    scopus 로고
    • Barking up the wrong tree: Modern northern European dogs fail to explain their origin
    • MalmstromH, Vila C, GilbertMT, Stora J, Willerslev E, et al. 2008. Barking up the wrong tree: modern northern European dogs fail to explain their origin. BMC Evol. Biol. 8:71
    • (2008) BMC Evol. Biol , vol.8 , pp. 71
    • Malmstrom, H.1    Vila, C.2    Gilbert, M.T.3    Stora, J.4    Willerslev, E.5
  • 101
    • 57849152382 scopus 로고    scopus 로고
    • Fossil dogs and wolves from Palaeolithic sites in Belgium, theUkraine and Russia: Osteometry, ancientDNAand stable isotopes
    • GermonpreM, Sablin MV, Stevens RE, Hedges REM, HofreiterM, et al. 2009. Fossil dogs and wolves from Palaeolithic sites in Belgium, theUkraine and Russia: osteometry, ancientDNAand stable isotopes. J. Archaeol. Sci. 36:473-90
    • (2009) J. Archaeol. Sci , vol.36 , pp. 473-490
    • Germonpre, M.1    Sablin, M.V.2    Stevens, R.E.3    Hedges, R.E.M.4    Hofreiter, M.5
  • 102
    • 2442713362 scopus 로고    scopus 로고
    • The earliest Ice Age dogs: Evidence fromEliseevichi i
    • SablinMV, Khlopachev GA. 2002. The earliest Ice Age dogs: evidence fromEliseevichi I. Curr. Anthropol. 43:795-99
    • (2002) Curr. Anthropol , vol.43 , pp. 795-799
    • Sablin, M.V.1    Khlopachev, G.A.2
  • 103
    • 84923206653 scopus 로고    scopus 로고
    • 3D morphometric analysis of fossil canid skulls contradicts the suggested domestication of dogs during the late Paleolithic
    • Drake AG, Coquerelle M, Colombeau G. 2015. 3D morphometric analysis of fossil canid skulls contradicts the suggested domestication of dogs during the late Paleolithic. Sci. Rep. 5:8299
    • (2015) Sci. Rep , vol.5 , pp. 8299
    • Drake, A.G.1    Coquerelle, M.2    Colombeau, G.3
  • 104
    • 84961203465 scopus 로고    scopus 로고
    • A Wolf in dog's clothing: Initial dog domestication and Pleistocene Wolf variation
    • Perri A. 2016. A wolf in dog's clothing: initial dog domestication and Pleistocene wolf variation. J. Archaeol. Sci. 68:1-4
    • (2016) J. Archaeol. Sci , vol.68 , pp. 1-4
    • Perri, A.1
  • 105
    • 84942985288 scopus 로고    scopus 로고
    • Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
    • Frantz LA, Schraiber JG, Madsen O, Megens HJ, Cagan A, et al. 2015. Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes. Nat. Genet. 47:1141-48
    • (2015) Nat. Genet , vol.47 , pp. 1141-1148
    • Frantz, L.A.1    Schraiber, J.G.2    Madsen, O.3    Megens, H.J.4    Cagan, A.5
  • 106
    • 84897025665 scopus 로고    scopus 로고
    • The genomic landscape of Neanderthal ancestry in present-day humans
    • Sankararaman S, Mallick S, Dannemann M, Prufer K, Kelso J, et al. 2014. The genomic landscape of Neanderthal ancestry in present-day humans. Nature 507:354-57
    • (2014) Nature , vol.507 , pp. 354-357
    • Sankararaman, S.1    Mallick, S.2    Dannemann, M.3    Prufer, K.4    Kelso, J.5
  • 107
    • 84975474808 scopus 로고    scopus 로고
    • The combined landscape of Denisovan and Neanderthal ancestry in present-day humans
    • Sankararaman S, Mallick S, Patterson N, Reich D. 2016. The combined landscape of Denisovan and Neanderthal ancestry in present-day humans. Curr. Biol. 26:1241-47
    • (2016) Curr. Biol , vol.26 , pp. 1241-1247
    • Sankararaman, S.1    Mallick, S.2    Patterson, N.3    Reich, D.4
  • 108
    • 0029848079 scopus 로고    scopus 로고
    • Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species
    • Bailey JF, Richards MB, Macaulay VA, Colson IB, James IT, et al. 1996. Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species. Proc. Biol. Sci. 263:1467-73
    • (1996) Proc. Biol. Sci , vol.263 , pp. 1467-1473
    • Bailey, J.F.1    Richards, M.B.2    Macaulay, V.A.3    Colson, I.B.4    James, I.T.5
  • 109
    • 34447300408 scopus 로고    scopus 로고
    • MitochondrialDNAanalysis shows a Near EasternNeolithic origin for domestic cattle and no indication of domestication ofEuropean aurochs
    • EdwardsCJ, Bollongino R, Scheu A, Chamberlain A, Tresset A, et al. 2007. MitochondrialDNAanalysis shows a Near EasternNeolithic origin for domestic cattle and no indication of domestication ofEuropean aurochs. Proc. R. Soc. Lond. B Biol. Sci. 274:1377-85
    • (2007) Proc. R. Soc. Lond. B Biol. Sci , vol.274 , pp. 1377-1385
    • Edwards, C.J.1    Bollongino, R.2    Scheu, A.3    Chamberlain, A.4    Tresset, A.5
  • 110
    • 66849128307 scopus 로고    scopus 로고
    • Cytochrome b sequences of ancient cattle and wild ox support phylogenetic complexity in the ancient andmodern bovine populations
    • Stock F, Edwards CJ, Bollongino R, Finlay EK, Burger J, Bradley DG. 2009. Cytochrome b sequences of ancient cattle and wild ox support phylogenetic complexity in the ancient andmodern bovine populations. Anim. Genet. 40:694-700
    • (2009) Anim. Genet , vol.40 , pp. 694-700
    • Stock, F.1    Edwards, C.J.2    Bollongino, R.3    Finlay, E.K.4    Burger, J.5    Bradley, D.G.6
  • 111
    • 77949496152 scopus 로고    scopus 로고
    • A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius)
    • Edwards CJ, Magee DA, Park SD, McGettigan PA, Lohan AJ, et al. 2010. A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius). PLOS ONE 5:e9255
    • (2010) PLOS ONE , vol.5 , pp. e9255
    • Edwards, C.J.1    Magee, D.A.2    Park, S.D.3    McGettigan, P.A.4    Lohan, A.J.5
  • 112
    • 33744462059 scopus 로고    scopus 로고
    • The origin of European cattle: Evidence from modern and ancient DNA
    • Beja-Pereira A, Caramelli D, Lalueza-Fox C, Vernesi C, Ferrand N, et al. 2006. The origin of European cattle: evidence from modern and ancient DNA. PNAS 103:8113-18
    • (2006) PNAS , vol.103 , pp. 8113-8118
    • Beja-Pereira, A.1    Caramelli, D.2    Lalueza-Fox, C.3    Vernesi, C.4    Ferrand, N.5
  • 113
    • 79251567071 scopus 로고    scopus 로고
    • The complete mitochondrial genome of an 11, 450-year-old aurochsen (Bos primigenius) from Central Italy
    • Lari M, Rizzi E, Mona S, Corti G, Catalano G, et al. 2011. The complete mitochondrial genome of an 11, 450-year-old aurochsen (Bos primigenius) from Central Italy. BMC Evol. Biol. 11:32
    • (2011) BMC Evol. Biol , vol.11 , pp. 32
    • Lari, M.1    Rizzi, E.2    Mona, S.3    Corti, G.4    Catalano, G.5
  • 114
    • 77951434301 scopus 로고    scopus 로고
    • Population dynamic of the extinct European aurochs: Genetic evidence of a north-south differentiation pattern and no evidence of postglacial expansion
    • Mona S, Catalano G, Lari M, Larson G, Boscato P, et al. 2010. Population dynamic of the extinct European aurochs: genetic evidence of a north-south differentiation pattern and no evidence of postglacial expansion. BMC Evol. Biol. 10:83
    • (2010) BMC Evol. Biol , vol.10 , pp. 83
    • Mona, S.1    Catalano, G.2    Lari, M.3    Larson, G.4    Boscato, P.5
  • 115
    • 84865503238 scopus 로고    scopus 로고
    • Statistical guidelines for detecting past population shifts using ancient DNA
    • Mourier T, Ho SY, GilbertMT, Willerslev E, Orlando L. 2012. Statistical guidelines for detecting past population shifts using ancient DNA. Mol. Biol. Evol. 29:2241-51
    • (2012) Mol. Biol. Evol , vol.29 , pp. 2241-2251
    • Mourier, T.1    Ho, S.Y.2    Gilbert, M.T.3    Willerslev, E.4    Orlando, L.5
  • 116
    • 84916231406 scopus 로고    scopus 로고
    • Almost 20 years of Neanderthal palaeogenetics: Adaptation, admixture, diversity, demography and extinction
    • Sánchez-Quinto F, Lalueza-Fox C. 2015. Almost 20 years of Neanderthal palaeogenetics: adaptation, admixture, diversity, demography and extinction. Philos. Trans. R. Soc. Lond. B Biol. Sci. 370:20130374
    • (2015) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.370 , pp. 20130374
    • Sánchez-Quinto, F.1    Lalueza-Fox, C.2
  • 117
    • 78650885878 scopus 로고    scopus 로고
    • Origin and history of mitochondrial DNA lineages in domestic horses
    • Cieslak M, PruvostM, Benecke N, HofreiterM, Morales A, et al. 2010. Origin and history of mitochondrial DNA lineages in domestic horses. PLOS ONE 5:e15311
    • (2010) PLOS ONE , vol.5 , pp. e15311
    • Cieslak, M.1    Pruvost, M.2    Benecke, N.3    Hofreiter, M.4    Morales, A.5
  • 118
    • 80052418885 scopus 로고    scopus 로고
    • Discovery of lost diversity of paternal horse lineages using ancient DNA
    • Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, et al. 2011. Discovery of lost diversity of paternal horse lineages using ancient DNA. Nat. Commun. 2:450
    • (2011) Nat. Commun , vol.2 , pp. 450
    • Lippold, S.1    Knapp, M.2    Kuznetsova, T.3    Leonard, J.A.4    Benecke, N.5
  • 119
    • 62849103887 scopus 로고    scopus 로고
    • Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
    • Ramakrishnan U, Hadly EA. 2009. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol. Ecol. 18:1310-30
    • (2009) Mol. Ecol , vol.18 , pp. 1310-1330
    • Ramakrishnan, U.1    Hadly, E.A.2
  • 120
    • 84931824945 scopus 로고    scopus 로고
    • Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
    • Ho SY, Duchene S, Duchene D. 2015. Simulating and detecting autocorrelation of molecular evolutionary rates among lineages. Mol. Ecol. Resour. 15:688-96
    • (2015) Mol. Ecol. Resour , vol.15 , pp. 688-696
    • Ho, S.Y.1    Duchene, S.2    Duchene, D.3
  • 122
    • 67749141990 scopus 로고    scopus 로고
    • Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis
    • Mona S, Grunz KE, Brauer S, Pakendorf B, Castri L, et al. 2009. Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Mol. Biol. Evol. 26:1865-77
    • (2009) Mol. Biol. Evol , vol.26 , pp. 1865-1877
    • Mona, S.1    Grunz, K.E.2    Brauer, S.3    Pakendorf, B.4    Castri, L.5
  • 123
    • 79952846662 scopus 로고    scopus 로고
    • Estimation of population divergence times from nonoverlapping genomic sequences: Examples from dogs and wolves
    • Skoglund P, Götherström A, Jakobsson M. 2011. Estimation of population divergence times from nonoverlapping genomic sequences: examples from dogs and wolves. Mol. Biol. Evol. 28:1505-17
    • (2011) Mol. Biol. Evol , vol.28 , pp. 1505-1517
    • Skoglund, P.1    Götherström, A.2    Jakobsson, M.3
  • 124
    • 22144499620 scopus 로고    scopus 로고
    • An efficient Monte Carlo method for estimatingNe from temporally spaced samples using a coalescent-based likelihood
    • Anderson EC. 2005. An efficient Monte Carlo method for estimatingNe from temporally spaced samples using a coalescent-based likelihood. Genetics 170:955-67
    • (2005) Genetics , vol.170 , pp. 955-967
    • Anderson, E.C.1
  • 125
    • 23744491421 scopus 로고    scopus 로고
    • Recovering the geographic origin of early modern humans by realistic and spatially explicit simulations
    • Ray N, Currat M, Berthier P, Excoffier L. 2005. Recovering the geographic origin of early modern humans by realistic and spatially explicit simulations. Genome Res. 15:1161-67
    • (2005) Genome Res , vol.15 , pp. 1161-1167
    • Ray, N.1    Currat, M.2    Berthier, P.3    Excoffier, L.4
  • 128
    • 84867176367 scopus 로고    scopus 로고
    • Estimating allele age and selection coefficient from time-serial data
    • Malaspinas AS, MalaspinasO, Evans SN, SlatkinM. 2012. Estimating allele age and selection coefficient from time-serial data. Genetics 192:599-607
    • (2012) Genetics , vol.192 , pp. 599-607
    • Malaspinas, A.S.1    Malaspinas, O.2    Evans, S.N.3    Slatkin, M.4
  • 129
    • 84979891829 scopus 로고    scopus 로고
    • Bayesian inference of natural selection from allele frequency time series
    • Schraiber JG, Evans SN, Slatkin M. 2016. Bayesian inference of natural selection from allele frequency time series. Genetics 203:493-511
    • (2016) Genetics , vol.203 , pp. 493-511
    • Schraiber, J.G.1    Evans, S.N.2    Slatkin, M.3
  • 130
    • 84883299920 scopus 로고    scopus 로고
    • The role of humans in facilitating and sustaining coat colour variation in domestic animals
    • Linderholm A, Larson G. 2013. The role of humans in facilitating and sustaining coat colour variation in domestic animals. Semin. Cell Dev. Biol. 24:587-93
    • (2013) Semin. Cell Dev. Biol , vol.24 , pp. 587-593
    • Linderholm, A.1    Larson, G.2
  • 132
    • 84886061966 scopus 로고    scopus 로고
    • Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse
    • Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, et al. 2013. Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse. PLOS ONE 8:e78280
    • (2013) PLOS ONE , vol.8 , pp. e78280
    • Bellone, R.R.1    Holl, H.2    Setaluri, V.3    Devi, S.4    Maddodi, N.5
  • 133
    • 81755172922 scopus 로고    scopus 로고
    • Genotypes of predomestic horses match phenotypes painted in Paleolithic works of cave art
    • Pruvost M, Bellone R, Benecke N, Sandoval-Castellanos E, Cieslak M, et al. 2011. Genotypes of predomestic horses match phenotypes painted in Paleolithic works of cave art. PNAS 108:18626-30
    • (2011) PNAS , vol.108 , pp. 18626-18630
    • Pruvost, M.1    Bellone, R.2    Benecke, N.3    Sandoval-Castellanos, E.4    Cieslak, M.5
  • 135
    • 84899620497 scopus 로고    scopus 로고
    • Establishing the validity of domestication genes using DNA from ancient chickens
    • Girdland Flink L, Allen R, Barnett R, Malmstrom H, Peters J, et al. 2014. Establishing the validity of domestication genes using DNA from ancient chickens. PNAS 111:6184-89
    • (2014) PNAS , vol.111 , pp. 6184-6189
    • Girdland Flink, L.1    Allen, R.2    Barnett, R.3    Malmstrom, H.4    Peters, J.5
  • 137
    • 84879984347 scopus 로고    scopus 로고
    • Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
    • Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, et al. 2013. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. PNAS 110:E2655-62
    • (2013) PNAS , vol.110 , pp. E2655-E2662
    • Koenig, D.1    Jiménez-Gómez, J.M.2    Kimura, S.3    Fulop, D.4    Chitwood, D.H.5
  • 138
    • 84899632712 scopus 로고    scopus 로고
    • Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)
    • Nabholz B, Sarah G, Sabot F, Ruiz M, Adam H, et al. 2014. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Mol. Ecol. 23:2210-27
    • (2014) Mol. Ecol , vol.23 , pp. 2210-2227
    • Nabholz, B.1    Sarah, G.2    Sabot, F.3    Ruiz, M.4    Adam, H.5
  • 139
    • 84953215554 scopus 로고    scopus 로고
    • Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs
    • Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, et al. 2016. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. PNAS 113:152-57
    • (2016) PNAS , vol.113 , pp. 152-157
    • Marsden, C.D.1    Ortega-Del Vecchyo, D.2    O'Brien, D.P.3    Taylor, J.F.4    Ramirez, O.5
  • 140
    • 84892911863 scopus 로고    scopus 로고
    • A paleogenomic perspective on evolution and gene function: New insights from ancient DNA
    • Shapiro B, HofreiterM. 2014. A paleogenomic perspective on evolution and gene function: new insights from ancient DNA. Science 343:1236573
    • (2014) Science , vol.343 , pp. 1236573
    • Shapiro, B.1    Hofreiter, M.2
  • 142
    • 84938877820 scopus 로고    scopus 로고
    • Reducingmicrobial and human contamination in DNA extractions from ancient bones and teeth
    • Korlević P, Gerber T, GansaugeMT, HajdinjakM, Nagel S, et al. 2015. Reducingmicrobial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques 59:87-93
    • (2015) Biotechniques , vol.59 , pp. 87-93
    • Korlević, P.1    Gerber, T.2    Gansauge, M.T.3    Hajdinjak, M.4    Nagel, S.5
  • 143
    • 84973304690 scopus 로고    scopus 로고
    • Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms
    • Gasc C, Peyretaillade E, Peyret P. 2016. Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms. Nucleic Acids Res. 44:4504-18
    • (2016) Nucleic Acids Res , vol.44 , pp. 4504-4518
    • Gasc, C.1    Peyretaillade, E.2    Peyret, P.3
  • 148
    • 84905483050 scopus 로고    scopus 로고
    • Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
    • Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, et al. 2014. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nat. Genet. 46:858-65
    • (2014) Nat. Genet , vol.46 , pp. 858-865
    • Daetwyler, H.D.1    Capitan, A.2    Pausch, H.3    Stothard, P.4    Van Binsbergen, R.5
  • 149
    • 84963787399 scopus 로고    scopus 로고
    • Whole-genome sequence data uncover loss of genetic diversity due to selection
    • Eynard SE, Windig JJ, Hiemstra SJ, Calus MP. 2016. Whole-genome sequence data uncover loss of genetic diversity due to selection. Genet. Sel. Evol. 48:33
    • (2016) Genet. Sel. Evol. , vol.48 , pp. 33
    • Eynard, S.E.1    Windig, J.J.2    Hiemstra, S.J.3    Calus, M.P.4
  • 150
    • 84900442346 scopus 로고    scopus 로고
    • Reconstructing theDNA methylation maps of the Neandertal and the Denisovan
    • GokhmanD, Lavi E, Prufer K, Fraga MF, Riancho JA, et al. 2014. Reconstructing theDNA methylation maps of the Neandertal and the Denisovan. Science 344:523-27
    • (2014) Science , vol.344 , pp. 523-527
    • Gokhman, D.1    Lavi, E.2    Prufer, K.3    Fraga, M.F.4    Riancho, J.A.5
  • 151
    • 84892911658 scopus 로고    scopus 로고
    • Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, et al. 2014. Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res. 24:454-66
    • (2014) Genome Res , vol.24 , pp. 454-466
    • Pedersen, J.S.1    Valen, E.2    Velazquez, A.M.3    Parker, B.J.4    Rasmussen, M.5
  • 153
    • 84892599022 scopus 로고    scopus 로고
    • Mitochondrial DNA diversity of modern, ancient and wild sheep (Ovis gmelinii anatolica) fromTurkey: New insights on the evolutionary history of sheep
    • Demirci S, Koban Bastanlar E, Dagtas ND, Piskin E, Engin A, et al. 2013. Mitochondrial DNA diversity of modern, ancient and wild sheep (Ovis gmelinii anatolica) fromTurkey: new insights on the evolutionary history of sheep. PLOS ONE 8:e81952
    • (2013) PLOS ONE , vol.8 , pp. e81952
    • Demirci, S.1    Koban Bastanlar, E.2    Dagtas, N.D.3    Piskin, E.4    Engin, A.5
  • 154
    • 33750360460 scopus 로고    scopus 로고
    • Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas
    • Fernandez H, Hughes S, Vigne JD, Helmer D, Hodgins G, et al. 2006. Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas. PNAS 103:15375-79
    • (2006) PNAS , vol.103 , pp. 15375-15379
    • Fernandez, H.1    Hughes, S.2    Vigne, J.D.3    Helmer, D.4    Hodgins, G.5
  • 155
    • 78650320041 scopus 로고    scopus 로고
    • Ancient DNA from Nubian and Somali wild ass provides insights into donkey ancestry and domestication
    • Kimura B, Marshall FB, Chen S, Rosenbom S, Moehlman PD, et al. 2011. Ancient DNA from Nubian and Somali wild ass provides insights into donkey ancestry and domestication. Proc. R. Soc. Lond. B Biol. Sci. 278:50-57
    • (2011) Proc. R. Soc. Lond. B Biol. Sci , vol.278 , pp. 50-57
    • Kimura, B.1    Marshall, F.B.2    Chen, S.3    Rosenbom, S.4    Moehlman, P.D.5
  • 156
    • 84864386443 scopus 로고    scopus 로고
    • Cats of the pharaohs: Genetic comparison of Egyptian cat mummies to their feline contemporaries
    • Kurushima JD, Ikram S, Knudsen J, Bleiberg E, GrahnRA, Lyons LA. 2012. Cats of the pharaohs: genetic comparison of Egyptian cat mummies to their feline contemporaries. J. Archaeol. Sci. 39:3217-23
    • (2012) J. Archaeol. Sci , vol.39 , pp. 3217-3223
    • Kurushima, J.D.1    Ikram, S.2    Knudsen, J.3    Bleiberg, E.4    Grahn, R.A.5    Lyons, L.A.6
  • 157
    • 84864697209 scopus 로고    scopus 로고
    • Investigating the global dispersal of chickens in prehistory using ancient mitochondrial DNA signatures
    • Storey AA, Athens JS, Bryant D, Carson M, Emery K, et al. 2012. Investigating the global dispersal of chickens in prehistory using ancient mitochondrial DNA signatures. PLOS ONE 7:e39171
    • (2012) PLOS ONE , vol.7 , pp. e39171
    • Storey, A.A.1    Athens, J.S.2    Bryant, D.3    Carson, M.4    Emery, K.5
  • 158
    • 84916613045 scopus 로고    scopus 로고
    • Early Holocene chicken domestication in northern China
    • Xiang H, Gao J, Yu B, Zhou H, Cai D, et al. 2014. Early Holocene chicken domestication in northern China. PNAS 111:17564-69
    • (2014) PNAS , vol.111 , pp. 17564-17569
    • Xiang, H.1    Gao, J.2    Yu, B.3    Zhou, H.4    Cai, D.5
  • 159
    • 84889251111 scopus 로고    scopus 로고
    • Morphological and genetic evidence for early Holocene cattle management in northeastern China
    • Zhang H, Paijmans JL, Chang F, Wu X, Chen G, et al. 2013. Morphological and genetic evidence for early Holocene cattle management in northeastern China. Nat. Commun. 4:2755
    • (2013) Nat. Commun , vol.4 , pp. 2755
    • Zhang, H.1    Paijmans, J.L.2    Chang, F.3    Wu, X.4    Chen, G.5


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