-
2
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green, R. E. et al. A draft sequence of the Neandertal genome. Science 328, 710-722 (2010).
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
-
3
-
-
84892365780
-
The complete genome sequence of a Neanderthal from the Altai Mountains
-
Prufer, K. et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505, 43-49 (2014).
-
(2014)
Nature
, vol.505
, pp. 43-49
-
-
Prufer, K.1
-
4
-
-
77950820147
-
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
-
Krause, J. et al. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature 464, 894-897 (2010).
-
(2010)
Nature
, vol.464
, pp. 894-897
-
-
Krause, J.1
-
5
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer, M. et al. A high-coverage genome sequence from an archaic Denisovan individual. Science 338, 222-226 (2012).
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
-
6
-
-
78650850475
-
Genetic history of an archaic hominin group from Denisova Cave in Siberia
-
Reich, D. et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468, 1053-1060 (2010).
-
(2010)
Nature
, vol.468
, pp. 1053-1060
-
-
Reich, D.1
-
7
-
-
84892367625
-
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
-
Raghavan, Maanasa, et al. "Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans." Nature 505, 87-91 (2014).
-
(2014)
Nature
, vol.505
, pp. 87-91
-
-
Raghavan, M.1
-
8
-
-
84907279761
-
The genetic prehistory of the New World Arctic
-
Raghavan, M. et al. The genetic prehistory of the New World Arctic. Science 345, 1255832 (2014).
-
(2014)
Science
, vol.345
, pp. 1255832
-
-
Raghavan, M.1
-
9
-
-
76749141381
-
Ancient human genome sequence of an extinct Palaeo-Eskimo
-
Rasmussen, M. et al. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463, 757-762 (2010).
-
(2010)
Nature
, vol.463
, pp. 757-762
-
-
Rasmussen, M.1
-
10
-
-
84893961036
-
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
-
Rasmussen, M. et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506, 225-229 (2014).
-
(2014)
Nature
, vol.506
, pp. 225-229
-
-
Rasmussen, M.1
-
11
-
-
84879888373
-
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
-
Orlando, Ludovic et al. "Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse." Nature 499, 74-78 (2013).
-
(2013)
Nature
, vol.499
, pp. 74-78
-
-
Orlando, L.1
-
12
-
-
84914688940
-
Genome sequence of a 45,000-year-old modern human from western Siberia
-
Fu, Q. et al. Genome sequence of a 45,000-year-old modern human from western Siberia. Nature 514, 445-449 (2014).
-
(2014)
Nature
, vol.514
, pp. 445-449
-
-
Fu, Q.1
-
13
-
-
84914675035
-
Genomic structure in Europeans dating back at least 36,200 years
-
Seguin-Orlando, A. et al. Genomic structure in Europeans dating back at least 36,200 years. Science 346, 1113-1118 (2014).
-
(2014)
Science
, vol.346
, pp. 1113-1118
-
-
Seguin-Orlando, A.1
-
14
-
-
84923357868
-
Genome flux and stasis in a five millennium transect of European prehistory
-
Gamba, C. et al. Genome flux and stasis in a five millennium transect of European prehistory. Nat. Commun. 5, 5257 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 5257
-
-
Gamba, C.1
-
15
-
-
84863230079
-
New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
-
Keller, A. et al. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nat. Commun. 3, 698 (2012).
-
(2012)
Nat. Commun.
, vol.3
, pp. 698
-
-
Keller, A.1
-
16
-
-
84907803675
-
Ancient human genomes suggest three ancestral populations for present-day Europeans
-
Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409-413 (2014).
-
(2014)
Nature
, vol.513
, pp. 409-413
-
-
Lazaridis, I.1
-
17
-
-
84896319183
-
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
-
Olalde, I. et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature 507, 225-228 (2014).
-
(2014)
Nature
, vol.507
, pp. 225-228
-
-
Olalde, I.1
-
18
-
-
84900491404
-
Genomic diversity and admixture differs for stone-age scandinavian foragers and farmers
-
Skoglund, P. et al. Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers. Science 344, 747-750 (2014).
-
(2014)
Science
, vol.344
, pp. 747-750
-
-
Skoglund, P.1
-
19
-
-
84890151805
-
Pulling out the 1%: Whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries
-
Carpenter, M. L. et al. Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries. Am. J. Hum. Genet. 93, 852-864 (2013).
-
(2013)
Am. J. Hum. Genet.
, vol.93
, pp. 852-864
-
-
Carpenter, M.L.1
-
20
-
-
84862181304
-
Ancient DNA studies: New perspectives on old samples
-
Rizzi, E., Lari, M., Gigli, E., De Bellis, G. & Caramelli, D. Ancient DNA studies: new perspectives on old samples. Genet Sel Evol 44, 21 (2012).
-
(2012)
Genet Sel Evol
, vol.44
, pp. 21
-
-
Rizzi, E.1
Lari, M.2
Gigli, E.3
De Bellis, G.4
Caramelli, D.5
-
21
-
-
31144442151
-
Metagenomics to paleogenomics: Large-scale sequencing of mammoth DNA
-
Poinar, H. N. et al. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311, 392-394 (2006).
-
(2006)
Science
, vol.311
, pp. 392-394
-
-
Poinar, H.N.1
-
22
-
-
84896919370
-
Shotgun microbial profiling of fossil remains
-
Sarkissian, C. et al. Shotgun microbial profiling of fossil remains. Mol. Ecol. 23, 1780-1798 (2014).
-
(2014)
Mol. Ecol.
, vol.23
, pp. 1780-1798
-
-
Sarkissian, C.1
-
23
-
-
84855512692
-
DNA in ancient bone-Where is it located and how should we extract it?
-
Campos, P. F. et al. DNA in ancient bone-Where is it located and how should we extract it? Ann. Anat.-Anat. Anz. 194, 7-16 (2012).
-
(2012)
Ann. Anat.-Anat. Anz.
, vol.194
, pp. 7-16
-
-
Campos, P.F.1
-
24
-
-
67249110285
-
New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
-
Schwarz, Carsten, et al. "New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains." Nucleic Acids Research 37, 3215-3229 (2009).
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 3215-3229
-
-
Schwarz, C.1
-
25
-
-
84897723205
-
Microbial bioerosion of bone - A review
-
Springer Berlin Heidelberg
-
Jans, Miranda ME. "Microbial bioerosion of bone - a review." In Current developments in bioerosion, pp. 397-413. Springer Berlin Heidelberg, 2008
-
(2008)
Current Developments in Bioerosion
, pp. 397-413
-
-
Jans Miranda, M.E.1
-
26
-
-
0036668901
-
The survival of organic matter in bone: A review
-
Collins, M. J. et al. The survival of organic matter in bone: a review. Archaeometry 44, 383-394 (2002).
-
(2002)
Archaeometry
, vol.44
, pp. 383-394
-
-
Collins, M.J.1
-
27
-
-
84860690205
-
Improving the performance of true single molecule sequencing for ancient DNA
-
Ginolhac, A. et al. Improving the performance of true single molecule sequencing for ancient DNA. BMC Genomics 13, 177 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 177
-
-
Ginolhac, A.1
-
28
-
-
80053495571
-
True single-molecule DNA sequencing of a pleistocene horse bone
-
Orlando, L. et al. True single-molecule DNA sequencing of a pleistocene horse bone. Genome Res. 21, 1705-1719 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1705-1719
-
-
Orlando, L.1
-
29
-
-
79952187261
-
Survival and recovery of DNA from ancient teeth and bones
-
Adler, C. J., Haak, W., Donlon, D. & Cooper, A. Survival and recovery of DNA from ancient teeth and bones. J. Archaeol. Sci. 38, 956-964 (2011).
-
(2011)
J. Archaeol. Sci.
, vol.38
, pp. 956-964
-
-
Adler, C.J.1
Haak, W.2
Donlon, D.3
Cooper, A.4
-
30
-
-
84887092738
-
Teeth as a source of DNA for forensic identification of human remains: A review
-
Higgins, D. & Austin, J. J. Teeth as a source of DNA for forensic identification of human remains: a review. Sci. Justice 53, 433-441 (2013).
-
(2013)
Sci. Justice
, vol.53
, pp. 433-441
-
-
Higgins, D.1
Austin, J.J.2
-
31
-
-
84885545850
-
Targeted sampling of cementum for recovery of nuclear DNA from human teeth and the impact of common decontamination measures
-
Higgins, D., Kaidonis, J., Townsend, G., Hughes, T. & Austin, J. J. Targeted sampling of cementum for recovery of nuclear DNA from human teeth and the impact of common decontamination measures. Investig. Genet. 4, 18 (2013).
-
(2013)
Investig. Genet.
, vol.4
, pp. 18
-
-
Higgins, D.1
Kaidonis, J.2
Townsend, G.3
Hughes, T.4
Austin, J.J.5
-
32
-
-
0036266710
-
A new improved method for extraction of DNA from teeth for the analysis of hypervariable loci
-
Trivedi, R., Chattopadhyay, P. & Kashyap, V. K. A new improved method for extraction of DNA from teeth for the analysis of hypervariable loci. Am. J. Forensic Med. Pathol. 23, 191-196 (2002).
-
(2002)
Am. J. Forensic Med. Pathol.
, vol.23
, pp. 191-196
-
-
Trivedi, R.1
Chattopadhyay, P.2
Kashyap, V.K.3
-
33
-
-
24944589560
-
Assessing ancient DNA studies
-
Gilbert, M. T. P., Bandelt, H.-J., Hofreiter, M. & Barnes, I. Assessing ancient DNA studies. Trends Ecol. Evol. 20, 541-544 (2005).
-
(2005)
Trends Ecol. Evol.
, vol.20
, pp. 541-544
-
-
Gilbert, M.T.P.1
Bandelt, H.-J.2
Hofreiter, M.3
Barnes, I.4
-
35
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs, A. W. et al. Patterns of damage in genomic DNA sequences from a Neandertal. Proc. Natl. Acad. Sci. 104, 14616-14621 (2007).
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 14616-14621
-
-
Briggs, A.W.1
-
36
-
-
77956285690
-
Illumina sequencing library preparation for highly multiplexed target capture and sequencing
-
Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 6, (2010).
-
(2010)
Cold Spring Harb. Protoc.
, vol.6
-
-
Meyer, M.1
Kircher, M.2
-
37
-
-
84863101693
-
AdapterRemoval: Easy cleaning of next-generation sequencing reads
-
Lindgreen, S. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res. Notes 5, 337 (2012).
-
(2012)
BMC Res. Notes
, vol.5
, pp. 337
-
-
Lindgreen, S.1
-
38
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
39
-
-
84860683374
-
Improving ancient DNA read mapping against modern reference genomes
-
Schubert, M. et al. Improving ancient DNA read mapping against modern reference genomes. BMC Genomics 13, 178 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 178
-
-
Schubert, M.1
-
40
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
41
-
-
33748682933
-
Quantification of damage in DNA recovered from highly degraded samples - A case study on DNA in faeces
-
Deagle, B. E., Eveson, J. P. & Jarman, S. N. Quantification of damage in DNA recovered from highly degraded samples - a case study on DNA in faeces. Front. Zool. 3, 11 (2006).
-
(2006)
Front. Zool.
, vol.3
, pp. 11
-
-
Deagle, B.E.1
Eveson, J.P.2
Jarman, S.N.3
-
42
-
-
84868087346
-
The half-life of DNA in bone: Measuring decay kinetics in 158 dated fossils
-
Allentoft, M. E. et al. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc. R. Soc. B Biol. Sci. 279, 4724-4733 (2012).
-
(2012)
Proc. R. Soc. B Biol. Sci.
, vol.279
, pp. 4724-4733
-
-
Allentoft, M.E.1
-
43
-
-
84879910635
-
MapDamage2. 0: Fast approximate Bayesian estimates of ancient DNA damage parameters
-
Jonsson, Hakon, et al. "mapDamage2. 0: fast approximate Bayesian estimates of ancient DNA damage parameters." Bioinformatics 29, 1682-1684 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 1682-1684
-
-
Jonsson, H.1
-
44
-
-
84943758045
-
Recovering samples for ancient DNA research - Guidelines for the field archaeologist
-
Date of access:27/04/15
-
Allentoft, M. E. Recovering samples for ancient DNA research - guidelines for the field archaeologist. Antiquity 87, http://www.antiquity.ac.uk/projgall/allentoft338/(2013). (Date of access:27/04/15)
-
(2013)
Antiquity
, pp. 87
-
-
Allentoft, M.E.1
-
45
-
-
84876151646
-
A revised timescale for human evolution based on ancient mitochondrial genomes
-
Fu, Q. et al. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr. Biol. 23, 553-559 (2013).
-
(2013)
Curr. Biol.
, vol.23
, pp. 553-559
-
-
Fu, Q.1
-
46
-
-
78649512174
-
Multiplexed DNA sequence capture of mitochondrial genomes using PCR products
-
Maricic, T., Whitten, M. & Paabo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PloS One 5, DOI: 10.1371/journal.pone.0014004 (2010).
-
(2010)
PloS One
, vol.5
-
-
Maricic, T.1
Whitten, M.2
Paabo, S.3
-
47
-
-
84875500588
-
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
-
Gansauge, M.-T. & Meyer, M. Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat. Protoc. 8, 737-748 (2013).
-
(2013)
Nat. Protoc.
, vol.8
, pp. 737-748
-
-
Gansauge, M.-T.1
Meyer, M.2
-
48
-
-
84907210065
-
Selective enrichment of damaged DNA molecules for ancient genome sequencing
-
Gansauge, M.-T. & Meyer, M. Selective enrichment of damaged DNA molecules for ancient genome sequencing. Genome Res. 24, 1543-1549 (2014).
-
(2014)
Genome Res.
, vol.24
, pp. 1543-1549
-
-
Gansauge, M.-T.1
Meyer, M.2
|