Twenty-five thousand years of fluctuating selection on leopard complex spotting and congenital night blindness in horse

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 370, Issue 1660, 2015, Pages

  Ludwig, Arne ^a   Reissmann, Monika ^b   Benecke, Norbert ^c   Bellone, Rebecca ^d   Sandoval Castellanos, Edson ^e   Cieslak, Michael ^a   Fortes, Gloria G ^f,g   Morales Muñiz, Arturo ^h   Hofreiter, Michael ^f,i   Pruvost, Melanie ^a,c,j  

^a LEIBNIZ INSTITUTE FOR ZOO AND WILDLIFE RESEARCH   (Germany)

^b HUMBOLDT UNIVERSITY   (Germany)

^c GERMAN ARCHAEOLOGICAL INSTITUTE   (Germany)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^f UNIVERSITY OF YORK   (United Kingdom)

^g UNIVERSITY OF A CORUÑA   (Spain)

^h UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

ⁱ UNIVERSITY OF POTSDAM   (Germany)

^j INSTITUT JACQUES MONOD   (France)

more..

Author keywords

Ancient DNA; Coat colour; Domestication; Equus; Palaeogenetics; Populatio

Indexed keywords

BAYESIAN ANALYSIS; BLINDNESS; BRONZE AGE; GENE; GENETIC DIFFERENTIATION; IRON AGE; MAMMAL; MEDIEVAL; PHENOTYPE; PLEISTOCENE; POLYMORPHISM; REINTRODUCTION; SELECTION; SKELETAL REMAINS; TEMPORAL ANALYSIS; WILD POPULATION;

EUROPE; KIRKLARELI; TURKEY;

EQUIDAE; EQUUS; PANTHERA PARDUS;

DNA; PRIMER DNA; TRANSIENT RECEPTOR POTENTIAL CHANNEL M;

ANIMAL; BAYES THEOREM; EUROPE; EYE DISEASE; FOSSIL; GENE FREQUENCY; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; HAIR COLOR; HISTORY; HORSE; HORSE DISEASE; MOLECULAR GENETICS; MYOPIA; NIGHT BLINDNESS; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; VETERINARY; X CHROMOSOME LINKED DISORDER;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; DNA; DNA MUTATIONAL ANALYSIS; DNA PRIMERS; EUROPE; EYE DISEASES, HEREDITARY; FOSSILS; GENE FREQUENCY; GENETIC DISEASES, X-LINKED; GENETIC VARIATION; HAIR COLOR; HISTORY, ANCIENT; HISTORY, MEDIEVAL; HORSE DISEASES; HORSES; MOLECULAR SEQUENCE DATA; MYOPIA; NIGHT BLINDNESS; POLYMORPHISM, SINGLE NUCLEOTIDE; SELECTION, GENETIC; TRPM CATION CHANNELS;

EID: 84916227686     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2013.0386     Document Type: Article

References (35)

1. Fradier G. 2001 Mosaiques Romaines de Tunisie. Tunis, Tunisia: Cèrés éditions (in French).
2. Williams JW. 1993 The art of medieval Spain AD 500-1200. New York, NY: Harry N. Abrams.
3. Morales DC. 2010 El Caballo en la Edad Media: un estado de la cuestión. In Homenaje al Profesor Eloy B. Ruano, vol. 2, pp. 537-552. Madrid: Sociedad Española de Estudios Medievales (in Spanish).
4. Terry RB, Archer S, Brooks S, Bernoco D, Bailey E. 2004 Assignment of the appaloosa coat colour gene (LP) to equine chromosome 1. Anim. Genet. 35, 134-137. (doi:10.1111/j.1365-2052.2004. 01113.x)
5. Bellone RR, Brooks SA, Sandmeyer L, Murphy BA, Forsyth G, Archer S, Bailey E, Grahn B. 2008 Differential gene expression of TRPM1, the potential cause of congenital stationary night blindness and coat spotting patterns (LP) in the Appaloosa horse (Equus caballus). Genetics 179, 1861-1870. (doi:10.1534/genetics.108.088807)
6. Bellone RR et al. 2010 Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses. Brief Funct. Genomics 9, 193-207. (doi:10.1093/bfgp/elq002)
7. Bellone RR, Archer S, Wade CM, Cuka-Lawson C, Haase B, Leeb T, Forsyth G, Sandmeyer L, Grahn B. 2010 Association analysis of candidate SNPs in TRPM1 with leopard complex spotting (LP) and congenital stationary night blindness (CSNB) in horses. Anim. Genet. 41(Suppl. 2), 207. (doi:10. 1111/j.1365-2052.2010.02119.x)
8. Bellone RR et al. 2013 LTR driven premature polyadenylation in TRPM1 causes congenital stationary night blindness and leopard complex spotting in horse: an ancient example of balancing selection. PLoS ONE 8, e78280. (doi:10.1371/journal.pone. 0078280)
9. Sandmeyer LS, Breaux CB, Archer S, Grahn BH. 2007 Clinical and electroretinographic characteristics of congenital stationary night blindness in the Appaloosa and the association with the leopard complex. Vet. Ophthalmol. 6, 368-375. (doi:10. 1111/j.1463-5224.2007.00572.x)
10. Sandmeyer LS, Bellone RR, Archer S, Bauer BS, Nelson J, Forsyth G, Grahn BH. 2012 Congenital stationary night blindness is associated with the leopard complex in the miniature horse. Vet. Ophthalmol. 15, 18-22. (doi:10.1111/j.1463-5224. 2011.00903.x)
11. Cieslak M, Reissmann M, Hofreiter M, Ludwig A. 2011 Colours of domestication. Biol. Rev. 86, 885- 899. (doi:10.1111/j.1469-185X.2011.00177.x)
12. Reissmann M, Ludwig A. 2013 Pleiotropic effects of coat-colour associated mutations in human, mice and other mammals. Semin. Cell Dev. Biol. 24, 376-386. (doi:10.1016/j.semcdb.2013.03.014)
13. Murphy J, Hall C, Arkins S. 2009 What horses and humans see: a comparative review. Int. J. Zool. 2009, 721798. (doi:10.1155/2009/721798)
14. Rebhun WC, Laratta LJ, Loew ER, Riis RC. 1984 Clinical manifestations of night blindness in the Appaloosa horse. Compendium Contin. Educ. 6, S103-S106.
15. Pruvost M et al. 2011 Genotypes of predomestic horses match phenotypes painted in Paleolithic works of cave art. Proc. Natl Acad. Sci. USA 108, 18 626-18 630. (doi:10.1073/pnas.1108982108)
16. Hodgson D. 2014 The significance of the Pech Merle spotted horses. Arts 3, 207-212. (doi:10.3390/ arts3020207)
17. Alpert BO. 2013 The meaning of the dots on the horses of Pech Merle. Arts 2, 476-490. (doi:10. 3390/arts2040476)
18. Ludwig A et al. 2009 Coat colour variation at the beginning of horse domestication. Science 324, 485. (doi:10.1126/science.1172750)
19. Rohland N, Hofreiter M. 2007 Ancient DNA extraction from bones and teeth. Nat. Protoc. 2, 1756-1762. (doi:10.1038/nprot.2007.247)
20. Rohland N, Hofreiter M. 2007 Comparison and optimization of ancient DNA extraction. Biotechniques 42, 343-352. (doi:10.2144/000112383)
21. Pruvost M, Reissmann M, Benecke N, Ludwig A. 2012 From genes to phenotypes - evaluation of two methods for the SNP analysis in archaeological remains: pyrosequencing and competitive allele specific PCR KASPar. Ann. Anat. 194, 74-81. (doi:10.1016/j.aanat.2011.10.007)
22. Sandoval-Castellanos E. 2010 Testing temporal changes in allele frequencies: a simulation approach. Genet. Res. Camb. 92, 309-320. (doi:10. 1017/S0016672310000339)
23. Bertorelle G, Benazzo A, Mona S. 2010 ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol. Ecol. 19, 2609-2625. (doi:10.1111/j.1365-294X.2010.04690.x)
24. Beaumont MA, Zhang WY, Balding DJ. 2002 Approximate Bayesian computation in population genetics. Genetics 162, 2025-2035.
25. Cieslak M, Pruvost M, Benecke N, Hofreiter M, Morales A, Reissmann M, Ludwig A. 2010 Origin and history of mitochondrial DNA lineages in domestic horses. PLoS ONE 5, e15311. (doi:10.1371/ journal.pone.0015311)
26. Pollak E. 1983 A new method for estimating the effective population size from allele frequency changes. Genetics 104, 531-548.
27. Benecke N. 2009 On the beginnings of horse husbandry in the Southern Balkan Peninsula: the horses from Kırklareli-Kanlıgeçit (Turkish Thrace). Turk. Acad. Sci. J. Archaeol. 12, 13-24.
28. Benecke N, Vasil'ev SK. 2013 Tierhaltung, Jagd und Fischfang in der spätbronze-/früheisenzeitlichen Siedlung von Čiča (Westsibirien). Beiträge zur Archäozoologie und Prähistorischen Anthropologie 9, 81-96 (in German).
29. Warmuth V et al. 2011 European domestic horses originated in two Holocene refugia. PLoS ONE 6, e18194. (doi:10.1371/journal.pone.0018194)
30. Vilà C, Seddon J, Ellegren H. 2005 Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet. 21, 214-218. (doi:10.1016/j.tig.2005.02.004)
31. Larson G et al. 2007 Ancient DNA, pig domestication, and the spread of the Neolithic into Europe. Proc. Natl Acad. Sci. USA 104, 15 276-15 281. (doi:10.1073/ pnas.0703411104)
32. Jansen T, Forster P, Levine MA, Oelke H, Hurles M, Renfrew C, Weber J, Olex K. 2002 Mitochondrial DNA and the origins of the domestic horse. Proc. Natl Acad. Sci. USA 99, 10 905-10 910. (doi:10. 1073/pnas.152330099)
33. Čugunov KV, Parzinger H, Nagler A, 2010 Der skythenzeitliche Fürstenkurgan Aržan 2 in Tuva. Archäologie in Eurasien 26. Mainz, Germany: Philipp von Zabern (in German).
34. Nissen J. 1999 Noriker. In Enzyklopädie des Pferderassen. Europa, Band 3, pp. 177-182. Stuttgart, Germany: Kosmos (in German).
35. Reissmann M. 2009 Die Farben der Pferde. Brunsbek, Germany: Cadmos (in German).