Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

Nature Protocols

Volumn 9, Issue 5, 2014, Pages 1056-1082

  Schubert, Mikkel ^a   Ermini, Luca ^a   Sarkissian, Clio Der ^a   Jónsson, Hákon ^a   Ginolhac, Aurélien ^a   Schaefer, Robert ^b   Martin, Michael D ^a   Fernández, Ruth ^a   Kircher, Martin ^c   McCue, Molly ^d   Willerslev, Eske ^a   Orlando, Ludovic ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF MINNESOTA   (United States)

^c UNIVERSITY OF WASHINGTON   (United States)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BOOTSTRAPPING; COMPUTER MODEL; COMPUTER PROGRAM; DATA PROCESSING; DNA SEQUENCE; GENE LIBRARY; GENE MAPPING; GENETIC DATABASE; GENOME ANALYSIS; GENOMICS; GENOTYPE; MAXIMUM LIKELIHOOD METHOD; METAGENOMICS; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENOMICS; PHYTOPHTHORA INFESTANS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; TAXONOMY; BIOLOGY; GENETICS; GENOME; HIGH THROUGHPUT SEQUENCING; PALEONTOLOGY; PHYLOGENY; PROCEDURES; STATISTICAL MODEL;

COMPUTATIONAL BIOLOGY; GENOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; LIKELIHOOD FUNCTIONS; METAGENOMICS; PALEONTOLOGY; PHYLOGENY; PHYTOPHTHORA INFESTANS; POLYMORPHISM, SINGLE NUCLEOTIDE; SOFTWARE;

EID: 84899508956     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2014.063     Document Type: Article

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