-
1
-
-
2442728636
-
Construction of biologically functional bacterial plasmids in vitro
-
Cohen SN, Chang AC, Boyer HW, Helling RB (1973) Construction of biologically functional bacterial plasmids in vitro. Proc Natl Acad Sci USA 70(11):3240-3244.
-
(1973)
Proc Natl Acad Sci USA
, vol.70
, Issue.11
, pp. 3240-3244
-
-
Cohen, S.N.1
Chang, A.C.2
Boyer, H.W.3
Helling, R.B.4
-
2
-
-
79951501719
-
DNA assembly for synthetic biology: From parts to pathways and beyond
-
Ellis T, Adie T, Baldwin GS (2011) DNA assembly for synthetic biology: From parts to pathways and beyond. Integr Biol (Camb) 3(2):109-118.
-
(2011)
Integr Biol (Camb)
, vol.3
, Issue.2
, pp. 109-118
-
-
Ellis, T.1
Adie, T.2
Baldwin, G.S.3
-
3
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang HH, et al. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature 460(7257):894-898.
-
(2009)
Nature
, vol.460
, Issue.7257
, pp. 894-898
-
-
Wang, H.H.1
-
4
-
-
79960502359
-
Precise manipulation of chromosomes in vivo enables genome-wide codon replacement
-
Isaacs FJ, et al. (2011) Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science 333(6040):348-353.
-
(2011)
Science
, vol.333
, Issue.6040
, pp. 348-353
-
-
Isaacs, F.J.1
-
5
-
-
84962138875
-
BioPartsBuilder: A synthetic biology tool for combinatorial assembly of biological parts
-
Yang K, Stracquadanio G, Luo J, Boeke JD, Bader JS (2016) BioPartsBuilder: A synthetic biology tool for combinatorial assembly of biological parts. Bioinformatics 32(6):937-939.
-
(2016)
Bioinformatics
, vol.32
, Issue.6
, pp. 937-939
-
-
Yang, K.1
Stracquadanio, G.2
Luo, J.3
Boeke, J.D.4
Bader, J.S.5
-
6
-
-
85013248914
-
BioPartsDB: A synthetic biology workflow web-application for education and research
-
Stracquadanio G, Yang K, Boeke JD, Bader JS (2016) BioPartsDB: A synthetic biology workflow web-application for education and research. Bioinformatics 32(22):3519-3521.
-
(2016)
Bioinformatics
, vol.32
, Issue.22
, pp. 3519-3521
-
-
Stracquadanio, G.1
Yang, K.2
Boeke, J.D.3
Bader, J.S.4
-
8
-
-
67849130568
-
Writing DNA with GenoCAD
-
Czar MJ, Cai Y, Peccoud J (2009) Writing DNA with GenoCAD. Nucleic Acid Res 37(Web Server issue):W40-W47.
-
(2009)
Nucleic Acid Res
, vol.37
, Issue.WEB SERVER ISSUE
, pp. W40-W47
-
-
Czar, M.J.1
Cai, Y.2
Peccoud, J.3
-
9
-
-
35748938455
-
A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts
-
Cai Y, Hartnett B, Gustafsson C, Peccoud J (2007) A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. Bioinformatics 23(20):2760-2767.
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2760-2767
-
-
Cai, Y.1
Hartnett, B.2
Gustafsson, C.3
Peccoud, J.4
-
10
-
-
84879816810
-
Building-in biosafety for synthetic biology
-
Wright O, Stan GB, Ellis T (2013) Building-in biosafety for synthetic biology. Microbiology 159(Pt 7):1221-1235.
-
(2013)
Microbiology
, vol.159
, pp. 1221-1235
-
-
Wright, O.1
Stan, G.B.2
Ellis, T.3
-
11
-
-
0037820426
-
Biological containment of genetically modified Lactococcus lactis for intestinal delivery of human interleukin 10
-
Steidler L, et al. (2003) Biological containment of genetically modified Lactococcus lactis for intestinal delivery of human interleukin 10. Nat Biotechnol 21(7):785-789.
-
(2003)
Nat Biotechnol
, vol.21
, Issue.7
, pp. 785-789
-
-
Steidler, L.1
-
12
-
-
0024311086
-
A family of genes encoding a cell-killing function may be conserved in all gram-negative bacteria
-
Poulsen LK, Larsen NW, Molin S, Andersson P (1989) A family of genes encoding a cell-killing function may be conserved in all gram-negative bacteria. Mol Microbiol 3(11):1463-1472.
-
(1989)
Mol Microbiol
, vol.3
, Issue.11
, pp. 1463-1472
-
-
Poulsen, L.K.1
Larsen, N.W.2
Molin, S.3
Andersson, P.4
-
13
-
-
0025966530
-
Development of efficient suicide mechanisms for biological containment of bacteria
-
Knudsen SM, Karlström OH (1991) Development of efficient suicide mechanisms for biological containment of bacteria. Appl Environ Microbiol 57(1):85-92.
-
(1991)
Appl Environ Microbiol
, vol.57
, Issue.1
, pp. 85-92
-
-
Knudsen, S.M.1
Karlström, O.H.2
-
14
-
-
0022764432
-
Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon
-
Gerdes K, et al. (1986) Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon. EMBO J 5(8):2023-2029.
-
(1986)
EMBO J
, vol.5
, Issue.8
, pp. 2023-2029
-
-
Gerdes, K.1
-
15
-
-
0023696645
-
Model suicide vector for containment of genetically engineered microorganisms
-
Bej AK, Perlin MH, Atlas RM (1988) Model suicide vector for containment of genetically engineered microorganisms. Appl Environ Microbiol 54(10):2472-2477.
-
(1988)
Appl Environ Microbiol
, vol.54
, Issue.10
, pp. 2472-2477
-
-
Bej, A.K.1
Perlin, M.H.2
Atlas, R.M.3
-
16
-
-
84925610163
-
GeneGuard: A modular plasmid system designed for biosafety
-
Wright O, Delmans M, Stan GB, Ellis T (2015) GeneGuard: A modular plasmid system designed for biosafety. ACS Synth Biol 4(3):307-316.
-
(2015)
ACS Synth Biol
, vol.4
, Issue.3
, pp. 307-316
-
-
Wright, O.1
Delmans, M.2
Stan, G.B.3
Ellis, T.4
-
17
-
-
0035377246
-
Dual system to reinforce biological containment of recombinant bacteria designed for rhizoremediation
-
Ronchel MC, Ramos JL (2001) Dual system to reinforce biological containment of recombinant bacteria designed for rhizoremediation. Appl Environ Microbiol 67(6):2649-2656.
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.6
, pp. 2649-2656
-
-
Ronchel, M.C.1
Ramos, J.L.2
-
18
-
-
84922595374
-
Recoded organisms engineered to depend on synthetic amino acids
-
Rovner AJ, et al. (2015) Recoded organisms engineered to depend on synthetic amino acids. Nature 518(7537):89-93.
-
(2015)
Nature
, vol.518
, Issue.7537
, pp. 89-93
-
-
Rovner, A.J.1
-
19
-
-
84923112573
-
Biocontainment of genetically modified organisms by synthetic protein design
-
Mandell DJ, et al. (2015) Biocontainment of genetically modified organisms by synthetic protein design. Nature 518(7537):55-60.
-
(2015)
Nature
, vol.518
, Issue.7537
, pp. 55-60
-
-
Mandell, D.J.1
-
20
-
-
84922678329
-
Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes
-
Cai Y, et al. (2015) Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes. Proc Natl Acad Sci USA 112(6):1803-1808.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.6
, pp. 1803-1808
-
-
Cai, Y.1
-
21
-
-
0034064282
-
Evolution and variation of the yeast (Saccharomyces) genome
-
Mortimer RK (2000) Evolution and variation of the yeast (Saccharomyces) genome. Genome Res 10(4):403-409.
-
(2000)
Genome Res
, vol.10
, Issue.4
, pp. 403-409
-
-
Mortimer, R.K.1
-
22
-
-
3142536716
-
Exploration of essential gene functions via titratable promoter alleles
-
Mnaimneh S, et al. (2004) Exploration of essential gene functions via titratable promoter alleles. Cell 118(1):31-44.
-
(2004)
Cell
, vol.118
, Issue.1
, pp. 31-44
-
-
Mnaimneh, S.1
-
23
-
-
0023484186
-
5-Fluoroorotic acid as a selective agent in yeast molecular genetics
-
Boeke JD, Trueheart J, Natsoulis G, Fink GR (1987) 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol 154:164-175.
-
(1987)
Methods Enzymol
, vol.154
, pp. 164-175
-
-
Boeke, J.D.1
Trueheart, J.2
Natsoulis, G.3
Fink, G.R.4
-
24
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
-
Brachmann CB, et al. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14(2):115-132.
-
(1998)
Yeast
, vol.14
, Issue.2
, pp. 115-132
-
-
Brachmann, C.B.1
-
25
-
-
84937157618
-
Yeast Golden Gate (yGG) for the efficient assembly of S. Cerevisiae transcription units
-
Agmon N, et al. (2015) Yeast Golden Gate (yGG) for the efficient assembly of S. cerevisiae transcription units. ACS Synth Biol 4(7):853-859.
-
(2015)
ACS Synth Biol
, vol.4
, Issue.7
, pp. 853-859
-
-
Agmon, N.1
-
26
-
-
0029809862
-
Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions
-
Vidal M, Brachmann RK, Fattaey A, Harlow E, Boeke JD (1996) Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions. Proc Natl Acad Sci USA 93(19):10315-10320.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, Issue.19
, pp. 10315-10320
-
-
Vidal, M.1
Brachmann, R.K.2
Fattaey, A.3
Harlow, E.4
Boeke, J.D.5
-
27
-
-
80655143315
-
Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae
-
McIsaac RS, et al. (2011) Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae. Mol Biol Cell 22(22):4447-4459.
-
(2011)
Mol Biol Cell
, vol.22
, Issue.22
, pp. 4447-4459
-
-
McIsaac, R.S.1
-
28
-
-
84876379604
-
Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast
-
McIsaac RS, et al. (2013) Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res 41(4):e57.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.4
, pp. e57
-
-
McIsaac, R.S.1
-
29
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh MC, et al. (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123(4):593-605.
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 593-605
-
-
Keogh, M.C.1
-
30
-
-
0346659954
-
Ubiquitous upstream repression sequences control activation of the inducible arginase gene in yeast
-
Sumrada RA, Cooper TG (1987) Ubiquitous upstream repression sequences control activation of the inducible arginase gene in yeast. Proc Natl Acad Sci USA 84(12):3997-4001.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, Issue.12
, pp. 3997-4001
-
-
Sumrada, R.A.1
Cooper, T.G.2
-
31
-
-
0030798070
-
A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
-
Garí E, Piedrafita L, Aldea M, Herrero E (1997) A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast 13(9):837-848.
-
(1997)
Yeast
, vol.13
, Issue.9
, pp. 837-848
-
-
Garí, E.1
Piedrafita, L.2
Aldea, M.3
Herrero, E.4
-
32
-
-
84943421779
-
Development of a tightly controlled off switch for Saccharomyces cerevisiae regulated by camphor, a low-cost natural product
-
Ikushima S, Zhao Y, Boeke JD (2015) Development of a tightly controlled off switch for Saccharomyces cerevisiae regulated by camphor, a low-cost natural product. G3 (Bethesda) 5(10):1983-1990.
-
(2015)
G3 (Bethesda)
, vol.5
, Issue.10
, pp. 1983-1990
-
-
Ikushima, S.1
Zhao, Y.2
Boeke, J.D.3
-
33
-
-
79958081747
-
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
-
Magtanong L, et al. (2011) Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nat Biotechnol 29(6):505-511.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.6
, pp. 505-511
-
-
Magtanong, L.1
-
35
-
-
0036275447
-
Getting started with yeast
-
Sherman F (2002) Getting started with yeast. Methods Enzymol 350:3-41.
-
(2002)
Methods Enzymol
, vol.350
, pp. 3-41
-
-
Sherman, F.1
-
36
-
-
0001313535
-
The distribution of the numbers of mutants in bacterial populations
-
Lea DE, Coulson CA (1949) The distribution of the numbers of mutants in bacterial populations. J Genet 49(3):264-285.
-
(1949)
J Genet
, vol.49
, Issue.3
, pp. 264-285
-
-
Lea, D.E.1
Coulson, C.A.2
-
38
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
39
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
-
40
-
-
0037371728
-
An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry
-
Castrillo JI, Hayes A, Mohammed S, Gaskell SJ, Oliver SG (2003) An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry. Phytochemistry 62(6):929-937.
-
(2003)
Phytochemistry
, vol.62
, Issue.6
, pp. 929-937
-
-
Castrillo, J.I.1
Hayes, A.2
Mohammed, S.3
Gaskell, S.J.4
Oliver, S.G.5
-
41
-
-
84919400169
-
Npr2 inhibits TORC1 to prevent inappropriate utilization of glutamine for biosynthesis of nitrogen-containing metabolites
-
Laxman S, Sutter BM, Shi L, Tu BP (2014) Npr2 inhibits TORC1 to prevent inappropriate utilization of glutamine for biosynthesis of nitrogen-containing metabolites. Sci Signal 7(356):ra120.
-
(2014)
Sci Signal
, vol.7
, Issue.356
-
-
Laxman, S.1
Sutter, B.M.2
Shi, L.3
Tu, B.P.4
-
42
-
-
36749067297
-
Cyclic changes in metabolic state during the life of a yeast cell
-
Tu BP, et al. (2007) Cyclic changes in metabolic state during the life of a yeast cell. Proc Natl Acad Sci USA 104(43):16886-16891.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.43
, pp. 16886-16891
-
-
Tu, B.P.1
|