메뉴 건너뛰기




Volumn 6, Issue 2, 2017, Pages 224-232

Direct Combinatorial Pathway Optimization

Author keywords

combinatorial pathway optimization; E. coli; lycopene

Indexed keywords

LYCOPENE; OLIGONUCLEOTIDE; CAROTENOID; DNA;

EID: 85013196997     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/acssynbio.6b00122     Document Type: Article
Times cited : (51)

References (38)
  • 1
    • 84940111165 scopus 로고    scopus 로고
    • Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals
    • Jullesson, D., David, F., Pfleger, B., and Nielsen, J. (2015) Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals Biotechnol. Adv. 33, 1395 10.1016/j.biotechadv.2015.02.011
    • (2015) Biotechnol. Adv. , vol.33 , pp. 1395
    • Jullesson, D.1    David, F.2    Pfleger, B.3    Nielsen, J.4
  • 3
    • 84922212497 scopus 로고    scopus 로고
    • When plants produce not enough or at all: Metabolic engineering of flavonoids in microbial hosts
    • Trantas, E. A., Koffas, M., Xu, P., and Ververidis, F. (2015) When plants produce not enough or at all: metabolic engineering of flavonoids in microbial hosts Front. Plant Sci. 10.3389/fpls.2015.00007
    • (2015) Front. Plant Sci.
    • Trantas, E.A.1    Koffas, M.2    Xu, P.3    Ververidis, F.4
  • 4
    • 84920880193 scopus 로고    scopus 로고
    • A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories
    • Fisher, A. K., Freedman, B. G., Bevan, D. R., and Senger, R. S. (2014) A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories Comput. Struct. Biotechnol. J. 11, 91-99 10.1016/j.csbj.2014.08.010
    • (2014) Comput. Struct. Biotechnol. J. , vol.11 , pp. 91-99
    • Fisher, A.K.1    Freedman, B.G.2    Bevan, D.R.3    Senger, R.S.4
  • 5
    • 84923809316 scopus 로고    scopus 로고
    • Biorefineries for the production of top building block chemicals and their derivatives
    • Choi, S., Song, C. W., Shin, J. H., and Lee, S. Y. (2015) Biorefineries for the production of top building block chemicals and their derivatives Metab. Eng. 28, 223-239 10.1016/j.ymben.2014.12.007
    • (2015) Metab. Eng. , vol.28 , pp. 223-239
    • Choi, S.1    Song, C.W.2    Shin, J.H.3    Lee, S.Y.4
  • 6
    • 78649716727 scopus 로고    scopus 로고
    • Manufacturing molecules through metabolic engineering
    • Keasling, J. D. (2010) Manufacturing molecules through metabolic engineering Science (Washington, DC, U. S.) 330, 1355-8 10.1126/science.1193990
    • (2010) Science (Washington, DC, U. S.) , vol.330 , pp. 1355-1358
    • Keasling, J.D.1
  • 7
    • 0034496492 scopus 로고    scopus 로고
    • Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria
    • Jones, K. L., Kim, S.-W., and Keasling, J. (2000) Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria Metab. Eng. 2, 328-338 10.1006/mben.2000.0161
    • (2000) Metab. Eng. , vol.2 , pp. 328-338
    • Jones, K.L.1    Kim, S.-W.2    Keasling, J.3
  • 8
    • 0034578389 scopus 로고    scopus 로고
    • Aggresomes, inclusion bodies and protein aggregation
    • Kopito, R. R. (2000) Aggresomes, inclusion bodies and protein aggregation Trends Cell Biol. 10, 524-530 10.1016/S0962-8924(00)01852-3
    • (2000) Trends Cell Biol. , vol.10 , pp. 524-530
    • Kopito, R.R.1
  • 9
    • 84897406062 scopus 로고    scopus 로고
    • Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels
    • Seo, S. W., Yang, J.-S., Cho, H.-S., Yang, J., Kim, S. C., Park, J. M., Kim, S., and Jung, G. Y. (2014) Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels Sci. Rep. 10.1038/srep04515
    • (2014) Sci. Rep.
    • Seo, S.W.1    Yang, J.-S.2    Cho, H.-S.3    Yang, J.4    Kim, S.C.5    Park, J.M.6    Kim, S.7    Jung, G.Y.8
  • 10
    • 0037677435 scopus 로고    scopus 로고
    • Metabolic load of recombinant protein production: Inhibition of cellular capacities for glucose uptake and respiration after induction of a heterologous gene in Escherichia coli
    • Neubauer, P., Lin, H. Y., and Mathiszik, B. (2003) Metabolic load of recombinant protein production: inhibition of cellular capacities for glucose uptake and respiration after induction of a heterologous gene in Escherichia coli Biotechnol. Bioeng. 83, 53-64 10.1002/bit.10645
    • (2003) Biotechnol. Bioeng. , vol.83 , pp. 53-64
    • Neubauer, P.1    Lin, H.Y.2    Mathiszik, B.3
  • 11
    • 33847309176 scopus 로고    scopus 로고
    • Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
    • Pitera, D. J., Paddon, C. J., Newman, J. D., and Keasling, J. D. (2007) Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli Metab. Eng. 9, 193-207 10.1016/j.ymben.2006.11.002
    • (2007) Metab. Eng. , vol.9 , pp. 193-207
    • Pitera, D.J.1    Paddon, C.J.2    Newman, J.D.3    Keasling, J.D.4
  • 12
    • 34547471980 scopus 로고    scopus 로고
    • Construction and model-based analysis of a promoter library for E. Coli: An indispensable tool for metabolic engineering
    • De Mey, M., Maertens, J., Lequeux, G. J., Soetaert, W. K., and Vandamme, E. J. (2007) Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering BMC Biotechnol. 7, 34 10.1186/1472-6750-7-34
    • (2007) BMC Biotechnol. , vol.7 , pp. 34
    • De Mey, M.1    Maertens, J.2    Lequeux, G.J.3    Soetaert, W.K.4    Vandamme, E.J.5
  • 15
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis, H. M., Mirsky, E. A., and Voigt, C. a. (2009) Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27, 946-50 10.1038/nbt.1568
    • (2009) Nat. Biotechnol. , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, A.C.3
  • 17
    • 67349270900 scopus 로고    scopus 로고
    • Enzymatic assembly of DNA molecules up to several hundred kilobases
    • III C.A.H.
    • Gibson, D. G., Young, L., Chuang, R.-y. Y., Venter, J. C., Iii, C. A. H., Smith, H. O., and America, N. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases Nat. Methods 6, 12-16 10.1038/nmeth.1318
    • (2009) Nat. Methods , vol.6 , pp. 12-16
    • Gibson, D.G.1    Young, L.2    Chuang R, Y.-Y.3    Venter, J.C.4    Smith, H.O.5    America, N.6
  • 18
    • 56649114274 scopus 로고    scopus 로고
    • A one pot, one step, precision cloning method with high throughput capability
    • Engler, C., Kandzia, R., and Marillonnet, S. (2008) A one pot, one step, precision cloning method with high throughput capability PLoS One 3, e3647 10.1371/journal.pone.0003647
    • (2008) PLoS One , vol.3 , pp. e3647
    • Engler, C.1    Kandzia, R.2    Marillonnet, S.3
  • 20
    • 79951997641 scopus 로고    scopus 로고
    • A modular cloning system for standardized assembly of multigene constructs
    • Weber, E., Engler, C., Gruetzner, R., Werner, S., and Marillonnet, S. (2011) A modular cloning system for standardized assembly of multigene constructs PLoS One 6, e16765 10.1371/journal.pone.0016765
    • (2011) PLoS One , vol.6 , pp. e16765
    • Weber, E.1    Engler, C.2    Gruetzner, R.3    Werner, S.4    Marillonnet, S.5
  • 22
    • 79951773902 scopus 로고    scopus 로고
    • Single-step linker-based combinatorial assembly of promoter and gene cassettes for pathway engineering
    • Ramon, A. and Smith, H. O. (2011) Single-step linker-based combinatorial assembly of promoter and gene cassettes for pathway engineering Biotechnol. Lett. 33, 549-55 10.1007/s10529-010-0455-x
    • (2011) Biotechnol. Lett. , vol.33 , pp. 549-555
    • Ramon, A.1    Smith, H.O.2
  • 23
    • 84896142083 scopus 로고    scopus 로고
    • One step DNA assembly for combinatorial metabolic engineering
    • Coussement, P., Maertens, J., Beauprez, J., Van Bellegem, W., and De Mey, M. (2014) One step DNA assembly for combinatorial metabolic engineering Metab. Eng. 23, 70-77 10.1016/j.ymben.2014.02.012
    • (2014) Metab. Eng. , vol.23 , pp. 70-77
    • Coussement, P.1    Maertens, J.2    Beauprez, J.3    Van Bellegem, W.4    De Mey, M.5
  • 24
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H. H., Isaacs, F. J., Carr, P. A., Sun, Z. Z., Xu, G., Forest, C. R., and Church, G. M. (2009) Programming cells by multiplex genome engineering and accelerated evolution Nature 460, 894-8 10.1038/nature08187
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 26
    • 35548954677 scopus 로고    scopus 로고
    • Engineering microbial cell factories for biosynthesis of isoprenoid molecules: Beyond lycopene
    • Klein-Marcuschamer, D., Ajikumar, P. K., and Stephanopoulos, G. (2007) Engineering microbial cell factories for biosynthesis of isoprenoid molecules: beyond lycopene Trends Biotechnol. 25, 417-24 10.1016/j.tibtech.2007.07.006
    • (2007) Trends Biotechnol. , vol.25 , pp. 417-424
    • Klein-Marcuschamer, D.1    Ajikumar, P.K.2    Stephanopoulos, G.3
  • 28
    • 0028485650 scopus 로고
    • Molecular structure and enzymatic function of lycopene cyclase from the cyanobacterium Synechococcus sp strain PCC7942
    • Cunningham, F. X., Sun, Z., Chamovitz, D., Hirschberg, J., and Gantt, E. (1994) Molecular structure and enzymatic function of lycopene cyclase from the cyanobacterium Synechococcus sp strain PCC7942 Plant Cell 6, 1107-1121 10.2307/3869889
    • (1994) Plant Cell , vol.6 , pp. 1107-1121
    • Cunningham, F.X.1    Sun, Z.2    Chamovitz, D.3    Hirschberg, J.4    Gantt, E.5
  • 29
    • 68149136937 scopus 로고    scopus 로고
    • Circular polymerase extension cloning of complex gene libraries and pathways
    • Quan, J. and Tian, J. (2009) Circular polymerase extension cloning of complex gene libraries and pathways PLoS One 4, e6441 10.1371/journal.pone.0006441
    • (2009) PLoS One , vol.4 , pp. e6441
    • Quan, J.1    Tian, J.2
  • 30
    • 84874244066 scopus 로고    scopus 로고
    • High level production of tyrosinase in recombinant Escherichia coli
    • Ren, Q., Henes, B., Fairhead, M., and Thöny-Meyer, L. (2013) High level production of tyrosinase in recombinant Escherichia coli BMC Biotechnol. 13, 18 10.1186/1472-6750-13-18
    • (2013) BMC Biotechnol. , vol.13 , pp. 18
    • Ren, Q.1    Henes, B.2    Fairhead, M.3    Thöny-Meyer, L.4
  • 31
    • 2642574503 scopus 로고    scopus 로고
    • R Core Team (), R Foundation for Statistical Computing, Vienna, Austria
    • R Core Team (2015) A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria.
    • (2015) A Language and Environment for Statistical Computing
  • 32
    • 77950900814 scopus 로고    scopus 로고
    • Modeling with a view to target identification in metabolic engineering: A critical evaluation of the available tools
    • Maertens, J. and Vanrolleghem, P. A. (2010) Modeling with a view to target identification in metabolic engineering: a critical evaluation of the available tools Biotechnol. Prog. 26, 313-331 10.1002/btpr.349
    • (2010) Biotechnol. Prog. , vol.26 , pp. 313-331
    • Maertens, J.1    Vanrolleghem, P.A.2
  • 33
    • 33751245592 scopus 로고    scopus 로고
    • Combinatorial biosynthesis of medicinal plant secondary metabolites
    • Julsing, M. K., Koulman, A., Woerdenbag, H. J., Quax, W. J., and Kayser, O. (2006) Combinatorial biosynthesis of medicinal plant secondary metabolites Biomol. Eng. 23, 265-279 10.1016/j.bioeng.2006.08.001
    • (2006) Biomol. Eng. , vol.23 , pp. 265-279
    • Julsing, M.K.1    Koulman, A.2    Woerdenbag, H.J.3    Quax, W.J.4    Kayser, O.5
  • 35
    • 0031896232 scopus 로고    scopus 로고
    • Random mutagenesis by whole-plasmid PCR amplification
    • Parikh, A. and Guengerich, F. P. (1998) Random mutagenesis by whole-plasmid PCR amplification Biotechniques 24, 428-431
    • (1998) Biotechniques , vol.24 , pp. 428-431
    • Parikh, A.1    Guengerich, F.P.2
  • 36
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R. C., Carey, V. J., and Bates, D. M. et al. 2004, Bioconductor: Open software development for computational biology and bioinformatics Genome Biology 5, R80 10.1186/gb-2004-5-10-r80
    • (2004) Genome Biology , vol.5 , pp. R80
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 37
    • 79958279010 scopus 로고    scopus 로고
    • Generation of families of construct variants using golden gate shuffling
    • Engler, C. and Marillonnet, S. (2011) Generation of families of construct variants using golden gate shuffling Methods Mol. Biol. (N. Y., NY, U. S.) 729, 167-181 10.1007/978-1-61779-065-2-11
    • (2011) Methods Mol. Biol. (N. Y., NY, U. S.) , vol.729 , pp. 167-181
    • Engler, C.1    Marillonnet, S.2
  • 38
    • 84855188601 scopus 로고    scopus 로고
    • Type 2 IDI performs better than type 1 for improving lycopene production in metabolically engineered E. Coli strains
    • Rad, S. A., Zahiri, H. S., Noghabi, K. A., Rajaei, S., Heidari, R., and Mojallali, L. (2012) Type 2 IDI performs better than type 1 for improving lycopene production in metabolically engineered E. coli strains World J. Microbiol. Biotechnol. 28, 313-321 10.1007/s11274-011-0821-4
    • (2012) World J. Microbiol. Biotechnol. , vol.28 , pp. 313-321
    • Rad, S.A.1    Zahiri, H.S.2    Noghabi, K.A.3    Rajaei, S.4    Heidari, R.5    Mojallali, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.