메뉴 건너뛰기




Volumn 19, Issue 4, 2017, Pages 1450-1462

Evaluating the core microbiota in complex communities: A systematic investigation

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BACTERIUM; MICROBIOLOGY; MICROFLORA; PHYLOGENY; SPONGE (PORIFERA);

EID: 85012920476     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.13647     Document Type: Article
Times cited : (164)

References (79)
  • 1
    • 84942197900 scopus 로고    scopus 로고
    • The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts
    • Ainsworth, T.D., Krause, L., Bridge, T., Torda, G., Raina, J.B., Zakrzewski, M., et al. (2015) The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME J 9: 2261–2274.
    • (2015) ISME J , vol.9 , pp. 2261-2274
    • Ainsworth, T.D.1    Krause, L.2    Bridge, T.3    Torda, G.4    Raina, J.B.5    Zakrzewski, M.6
  • 2
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson, M.J. (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32–46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 4
    • 84869188027 scopus 로고    scopus 로고
    • Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications
    • Bäckhed, F., Fraser, C.M., Ringel, Y., Sanders, M.E., Sartor, R.B., Sherman, P.M., et al. (2012) Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe 12: 611–622.
    • (2012) Cell Host Microbe , vol.12 , pp. 611-622
    • Bäckhed, F.1    Fraser, C.M.2    Ringel, Y.3    Sanders, M.E.4    Sartor, R.B.5    Sherman, P.M.6
  • 5
    • 67749099944 scopus 로고    scopus 로고
    • Disentangling the web of life
    • Bascompte, J. (2009) Disentangling the web of life. Science 325: 416–419.
    • (2009) Science , vol.325 , pp. 416-419
    • Bascompte, J.1
  • 6
    • 84925284153 scopus 로고    scopus 로고
    • Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: implications for conservation and management
    • Bell, J.J., Smith, D.J., Hannan, D., Haris, A., Jompa, J., and Thomas, L. (2014) Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: implications for conservation and management. PLoS One 9: e91635.
    • (2014) PLoS One , vol.9
    • Bell, J.J.1    Smith, D.J.2    Hannan, D.3    Haris, A.4    Jompa, J.5    Thomas, L.6
  • 7
    • 84962119088 scopus 로고    scopus 로고
    • Characterization of the core and caste-specific microbiota in the termite, Reticulitermes flavipes
    • Benjamino, J., and Graf, J. (2016) Characterization of the core and caste-specific microbiota in the termite, Reticulitermes flavipes. Front Microbiol 7: 171.
    • (2016) Front Microbiol , vol.7 , pp. 171
    • Benjamino, J.1    Graf, J.2
  • 8
    • 84905030166 scopus 로고    scopus 로고
    • Deciphering microbial interactions and detecting keystone species with co-occurrence networks
    • Berry, D., and Widder, S. (2014) Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front Microbiol 5: 1–14.
    • (2014) Front Microbiol , vol.5 , pp. 1-14
    • Berry, D.1    Widder, S.2
  • 9
    • 84892171409 scopus 로고    scopus 로고
    • Specificity and temporal dynamics of complex bacteria – sponge symbiotic interactions
    • Björk, J.R., Díez-Vives, C., Coma, R., Ribes, M., and Montoya, J.M. (2013) Specificity and temporal dynamics of complex bacteria – sponge symbiotic interactions. Ecology 94: 2781–2791.
    • (2013) Ecology , vol.94 , pp. 2781-2791
    • Björk, J.R.1    Díez-Vives, C.2    Coma, R.3    Ribes, M.4    Montoya, J.M.5
  • 10
    • 33748894852 scopus 로고    scopus 로고
    • Measuring specialization in species interaction networks
    • Blüthgen, N., Menzel, F., and Blüthgen, N. (2006) Measuring specialization in species interaction networks. BMC Ecol 6: 1–12.
    • (2006) BMC Ecol , vol.6 , pp. 1-12
    • Blüthgen, N.1    Menzel, F.2    Blüthgen, N.3
  • 11
    • 33846917421 scopus 로고    scopus 로고
    • Specialization, constraints, and conflicting interests in mutualistic networks
    • Blüthgen, N., Menzel, F., Hovestadt, T., Fiala, B., and Blüthgen, N. (2007) Specialization, constraints, and conflicting interests in mutualistic networks. Curr Biol 17: 341–346.
    • (2007) Curr Biol , vol.17 , pp. 341-346
    • Blüthgen, N.1    Menzel, F.2    Hovestadt, T.3    Fiala, B.4    Blüthgen, N.5
  • 12
    • 84986626338 scopus 로고    scopus 로고
    • Insights into the coral microbiome: Underpinning the health and resilience of reef ecosystems
    • Bourne, D.G., Morrow, K.M. and Webster, N.S. (2016) Insights into the coral microbiome: Underpinning the health and resilience of reef ecosystems. Annual Reviews of Microbiology 70: 317–340.
    • (2016) Annual Reviews of Microbiology , vol.70 , pp. 317-340
    • Bourne, D.G.1    Morrow, K.M.2    Webster, N.S.3
  • 13
    • 0000286531 scopus 로고
    • An ordination of the upland forest community of southern Wisconsin
    • Bray, J.R., and Curtis, J.T. (1957) An ordination of the upland forest community of southern Wisconsin. Ecol Monogr 27: 325–349.
    • (1957) Ecol Monogr , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 14
    • 72949118701 scopus 로고    scopus 로고
    • Associations between species and groups of sites: Indices and statistical inference
    • De Cáceres, M., and Legendre, P. (2009) Associations between species and groups of sites: Indices and statistical inference. Ecology 90: 3566–3574.
    • (2009) Ecology , vol.90 , pp. 3566-3574
    • De Cáceres, M.1    Legendre, P.2
  • 16
    • 84901695100 scopus 로고    scopus 로고
    • Influence of environmental variation on symbiotic bacterial communities of two temperate sponges
    • Cárdenas, C.A., Bell, J.J., Davy, S.K., Hoggard, M., and Taylor, M.W. (2014) Influence of environmental variation on symbiotic bacterial communities of two temperate sponges. FEMS Microbiol Ecol 88: 516–527.
    • (2014) FEMS Microbiol Ecol , vol.88 , pp. 516-527
    • Cárdenas, C.A.1    Bell, J.J.2    Davy, S.K.3    Hoggard, M.4    Taylor, M.W.5
  • 17
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao, A. (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11: 265–270.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 18
    • 84942693125 scopus 로고    scopus 로고
    • Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children
    • Cheng, J., Ringel-Kulka, T., Heikamp-de Jong, I., Ringel, Y., Carroll, I., de Vos, W.M., et al. (2016) Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children. ISME J 10: 1002–1014.
    • (2016) ISME J , vol.10 , pp. 1002-1014
    • Cheng, J.1    Ringel-Kulka, T.2    Heikamp-de Jong, I.3    Ringel, Y.4    Carroll, I.5    de Vos, W.M.6
  • 19
    • 85016762782 scopus 로고    scopus 로고
    • PRIMER v6 User Manual/Tutorial
    • Clarke, K.R., and Gorley, R.N. (2006) PRIMER v6: User Manual/Tutorial.
    • (2006)
    • Clarke, K.R.1    Gorley, R.N.2
  • 20
    • 84947216877 scopus 로고    scopus 로고
    • The ecology of the microbiome: networks, competition, and stability
    • Coyte, K.Z., Schluter, J., and Foster, K.R. (2015) The ecology of the microbiome: networks, competition, and stability. Science 350: 663–666.
    • (2015) Science , vol.350 , pp. 663-666
    • Coyte, K.Z.1    Schluter, J.2    Foster, K.R.3
  • 22
    • 1042302949 scopus 로고    scopus 로고
    • The gut bacteria of insects: Nonpathogenic interactions
    • Dillon, R., and Dillon, V. (2004) The gut bacteria of insects: Nonpathogenic interactions. Annu Rev Entomol 49: 71–92.
    • (2004) Annu Rev Entomol , vol.49 , pp. 71-92
    • Dillon, R.1    Dillon, V.2
  • 23
    • 67650774722 scopus 로고    scopus 로고
    • Introducing the bipartite package: analysing ecological networks
    • Dormann, C.F., Gruber, B., and Fründ, J. (2008) Introducing the bipartite package: analysing ecological networks. R News 8: 8–11.
    • (2008) R News , vol.8 , pp. 8-11
    • Dormann, C.F.1    Gruber, B.2    Fründ, J.3
  • 24
    • 84892473124 scopus 로고    scopus 로고
    • A method for detecting modules in quantitative bipartite networks
    • Dormann, C.F., and Strauss, R. (2014) A method for detecting modules in quantitative bipartite networks. Methods Ecol Evol 5: 90–98.
    • (2014) Methods Ecol Evol , vol.5 , pp. 90-98
    • Dormann, C.F.1    Strauss, R.2
  • 25
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460–2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 26
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: Highly accurate OTU sequences from microbial amplicon reads
    • Edgar, R.C. (2013) UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10: 996–998.
    • (2013) Nat Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 27
    • 84856035239 scopus 로고    scopus 로고
    • A specific mix of generalists: bacterial symbionts in Mediterranean Ircinia spp
    • Erwin, P.M., López-Legentil, S., González-Pech, R., and Turon, X. (2012) A specific mix of generalists: bacterial symbionts in Mediterranean Ircinia spp. FEMS Microbiol Ecol 79: 619–637.
    • (2012) FEMS Microbiol Ecol , vol.79 , pp. 619-637
    • Erwin, P.M.1    López-Legentil, S.2    González-Pech, R.3    Turon, X.4
  • 28
    • 35948953592 scopus 로고    scopus 로고
    • Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    • Fierer, N., Breitbart, M., Nulton, J., Salamon, P., Lozupone, C., Jones, R., et al. (2007) Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol 73: 7059–7066.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7059-7066
    • Fierer, N.1    Breitbart, M.2    Nulton, J.3    Salamon, P.4    Lozupone, C.5    Jones, R.6
  • 30
    • 84878331217 scopus 로고    scopus 로고
    • Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance?
    • Freeman, C.J., Thacker, R.W., Baker, D.M., and Fogel, M.L. (2013) Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance? ISME J 7: 1116–1125.
    • (2013) ISME J , vol.7 , pp. 1116-1125
    • Freeman, C.J.1    Thacker, R.W.2    Baker, D.M.3    Fogel, M.L.4
  • 31
    • 84920686651 scopus 로고    scopus 로고
    • Comparison of the gut microbiomes of 12 bony fish and 3 shark species
    • Givens, C.E., Ransom, B., Bano, N., and Hollibaugh, J.T. (2015) Comparison of the gut microbiomes of 12 bony fish and 3 shark species. Mar Ecol Prog Ser 518: 209–223.
    • (2015) Mar Ecol Prog Ser , vol.518 , pp. 209-223
    • Givens, C.E.1    Ransom, B.2    Bano, N.3    Hollibaugh, J.T.4
  • 32
    • 84960157936 scopus 로고    scopus 로고
    • The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance
    • Glasl, B., Herndl, G.J., and Frade, P.R. (2016) The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J 10: 1–13.
    • (2016) ISME J , vol.10 , pp. 1-13
    • Glasl, B.1    Herndl, G.J.2    Frade, P.R.3
  • 33
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: tools, techniques, and challenges
    • Hamady, M., and Knight, R. (2009) Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 19: 1141–1152.
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 36
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse, S.M., Ye, Y., Zhou, Y., and Fodor, A.A. (2012) A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One 7: e34242.
    • (2012) PLoS One , vol.7
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 40
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone, C., and Knight, R. (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228–8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 42
    • 0037452044 scopus 로고    scopus 로고
    • Explaining the excess of rare species in natural species abundance distributions
    • Magurran, A.E., and Henderson, P.A. (2003) Explaining the excess of rare species in natural species abundance distributions. Nature 422: 714–716.
    • (2003) Nature , vol.422 , pp. 714-716
    • Magurran, A.E.1    Henderson, P.A.2
  • 43
    • 77955550380 scopus 로고    scopus 로고
    • Sex-specific asymmetry within the cloacal microbiota of the striped plateau lizard, Sceloporus virgatus
    • Martin, M.O., Gilman, F.R., and Weiss, S.L. (2010) Sex-specific asymmetry within the cloacal microbiota of the striped plateau lizard, Sceloporus virgatus. Symbiosis 51: 97–105.
    • (2010) Symbiosis , vol.51 , pp. 97-105
    • Martin, M.O.1    Gilman, F.R.2    Weiss, S.L.3
  • 44
    • 84868270724 scopus 로고    scopus 로고
    • The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
    • McDonald, D., Clemente, J.C., Kuczynski, J., Rideout, J., Stombaugh, J., Wendel, D., et al. (2012) The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7.
    • (2012) Gigascience , vol.1 , pp. 7
    • McDonald, D.1    Clemente, J.C.2    Kuczynski, J.3    Rideout, J.4    Stombaugh, J.5    Wendel, D.6
  • 45
    • 84892939264 scopus 로고    scopus 로고
    • Coral reefs of the Wakatobi: Abundance and diversity
    • In, Clifton, J., Unsworth, R., Smith, D., (eds)., New York, Nova Science Publishers
    • McMellor, S., and Smith, D.J. (2010) Coral reefs of the Wakatobi: Abundance and diversity. In Marine Research and Conservation in the Coral Triangle. The Wakatobi National Park. Clifton, J., Unsworth, R., and Smith, D. (eds). New York: Nova Science Publishers, pp. 11–26.
    • (2010) Marine Research and Conservation in the Coral Triangle. The Wakatobi National Park , pp. 11-26
    • McMellor, S.1    Smith, D.J.2
  • 46
    • 82955194453 scopus 로고    scopus 로고
    • Sponge-associated bacteria are strictly maintained in two closely related but geographically distant sponge hosts
    • Montalvo, N.F., and Hill, R.T. (2011) Sponge-associated bacteria are strictly maintained in two closely related but geographically distant sponge hosts. Appl Environ Microbiol 77: 7207–7216.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7207-7216
    • Montalvo, N.F.1    Hill, R.T.2
  • 47
    • 84931265429 scopus 로고    scopus 로고
    • Functional group diversity increases with modularity in complex food webs
    • Montoya, D., Yallop, M.L., and Memmott, J. (2015) Functional group diversity increases with modularity in complex food webs. Nat Commun 6: 7379.
    • (2015) Nat Commun , vol.6 , pp. 7379
    • Montoya, D.1    Yallop, M.L.2    Memmott, J.3
  • 48
    • 33746327503 scopus 로고    scopus 로고
    • Ecological networks and their fragility
    • Montoya, J.M., Pimm, S.L., and Solé, R.V. (2006) Ecological networks and their fragility. Nature 442: 259–264.
    • (2006) Nature , vol.442 , pp. 259-264
    • Montoya, J.M.1    Pimm, S.L.2    Solé, R.V.3
  • 49
    • 4344568725 scopus 로고    scopus 로고
    • The winnowing: establishing the squid-Vibrio symbiosis
    • Nyholm, S.V., and McFall-Ngai, M.J. (2004) The winnowing: establishing the squid-Vibrio symbiosis. Nat Rev Microbiol 2: 632–642.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 632-642
    • Nyholm, S.V.1    McFall-Ngai, M.J.2
  • 50
    • 84908090545 scopus 로고    scopus 로고
    • Identifying the core microbial community in the gut of fungus-growing termites
    • Otani, S., Mikaelyan, A., Nobre, T., Hansen, L.H., Koné, N.A., Sørensen, S.J., et al. (2014) Identifying the core microbial community in the gut of fungus-growing termites. Mol Ecol 23: 4631–4644.
    • (2014) Mol Ecol , vol.23 , pp. 4631-4644
    • Otani, S.1    Mikaelyan, A.2    Nobre, T.3    Hansen, L.H.4    Koné, N.A.5    Sørensen, S.J.6
  • 51
    • 84899835978 scopus 로고    scopus 로고
    • Reduced diversity and high sponge abundance on a sedimented indo-pacific reef system: implications for future changes in environmental quality
    • Powell, A., Smith, D.J., Hepburn, L.J., Jones, T., Berman, J., Jompa, J., and Bell, J.J. (2014) Reduced diversity and high sponge abundance on a sedimented indo-pacific reef system: implications for future changes in environmental quality. PLoS One 9: e85253.
    • (2014) PLoS One , vol.9
    • Powell, A.1    Smith, D.J.2    Hepburn, L.J.3    Jones, T.4    Berman, J.5    Jompa, J.6    Bell, J.J.7
  • 52
    • 85016833886 scopus 로고    scopus 로고
    • R A Language and Environment for Statistical Computing
    • R Core Team (2014) R: A Language and Environment for Statistical Computing.
    • (2014)
  • 53
    • 84908132133 scopus 로고    scopus 로고
    • Biogeographic patterns in below-ground diversity in New York City ’ s Central Park are similar to those observed globally
    • 20141988
    • Ramirez, K.S., Leff, J.W., Barberán, A., Bates, S.T., Betley, J., Thomas, W., et al. (2014) Biogeographic patterns in below-ground diversity in New York City ’ s Central Park are similar to those observed globally. Proc R Soc B 281: 20141988. doi:10.1098/rspb.2014.1988.
    • (2014) Proc R Soc B , vol.281
    • Ramirez, K.S.1    Leff, J.W.2    Barberán, A.3    Bates, S.T.4    Betley, J.5    Thomas, W.6
  • 55
    • 0017341656 scopus 로고
    • Microbial ecology of the gastrointestinal tract
    • Savage, D.C. (1977) Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31: 107–133.
    • (1977) Annu Rev Microbiol , vol.31 , pp. 107-133
    • Savage, D.C.1
  • 56
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537–7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 57
    • 84857121586 scopus 로고    scopus 로고
    • Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
    • Schmitt, S., Tsai, P., Bell, J., Fomont, J., Ilan, M., Lindquist, N., et al. (2012) Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. ISME J 6: 564–576.
    • (2012) ISME J , vol.6 , pp. 564-576
    • Schmitt, S.1    Tsai, P.2    Bell, J.3    Fomont, J.4    Ilan, M.5    Lindquist, N.6
  • 58
    • 84873494170 scopus 로고    scopus 로고
    • Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges
    • Schöttner, S., Hoffmann, F., Cárdenas, P., Rapp, H.T., Boetius, A., and Ramette, A. (2013) Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges. PLoS One 8: e55505.
    • (2013) PLoS One , vol.8
    • Schöttner, S.1    Hoffmann, F.2    Cárdenas, P.3    Rapp, H.T.4    Boetius, A.5    Ramette, A.6
  • 59
    • 84964252305 scopus 로고    scopus 로고
    • The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender- and swarm-enriched microbial biomarkers
    • Segata, N., Baldini, F., Pompon, J., Garrett, W.S., Truong, D.T., Dabiré, R.K., et al. (2016) The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender- and swarm-enriched microbial biomarkers. Sci Rep 6: 24207.
    • (2016) Sci Rep , vol.6 , pp. 24207
    • Segata, N.1    Baldini, F.2    Pompon, J.3    Garrett, W.S.4    Truong, D.T.5    Dabiré, R.K.6
  • 61
    • 84855294263 scopus 로고    scopus 로고
    • Beyond the Venn diagram: The hunt for a core microbiome
    • Shade, A., and Handelsman, J. (2012) Beyond the Venn diagram: The hunt for a core microbiome. Environ Microbiol 14: 4–12.
    • (2012) Environ Microbiol , vol.14 , pp. 4-12
    • Shade, A.1    Handelsman, J.2
  • 62
    • 84899957349 scopus 로고    scopus 로고
    • Functional and phylogenetic assembly of microbial communities in the human microbiome
    • Shafquat, A., Joice, R., Simmons, S.L., and Huttenhower, C. (2014) Functional and phylogenetic assembly of microbial communities in the human microbiome. Trends Microbiol 22: 261–266.
    • (2014) Trends Microbiol , vol.22 , pp. 261-266
    • Shafquat, A.1    Joice, R.2    Simmons, S.L.3    Huttenhower, C.4
  • 63
    • 84870495828 scopus 로고    scopus 로고
    • Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge, Rhopaloeides odorabile
    • Simister, R., Taylor, M.W., Tsai, P., Fan, L., Bruxner, T.J., Crowe, M.L., and Webster, N. (2012a) Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge, Rhopaloeides odorabile. Environ Microbiol 14: 3232–3246.
    • (2012) Environ Microbiol , vol.14 , pp. 3232-3246
    • Simister, R.1    Taylor, M.W.2    Tsai, P.3    Fan, L.4    Bruxner, T.J.5    Crowe, M.L.6    Webster, N.7
  • 64
    • 84856569941 scopus 로고    scopus 로고
    • Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms
    • Simister, R.L., Deines, P., Botté, E.S., Webster, N.S., and Taylor, M.W. (2012b) Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms. Environ Microbiol 14: 517–524.
    • (2012) Environ Microbiol , vol.14 , pp. 517-524
    • Simister, R.L.1    Deines, P.2    Botté, E.S.3    Webster, N.S.4    Taylor, M.W.5
  • 65
    • 84862770956 scopus 로고    scopus 로고
    • Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
    • Sullam, K.E., Essinger, S.D., Lozupone, C.A., O'connor, M.P., Rosen, G.L., Knight, R., et al. (2012) Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis. Mol Ecol 21: 3363–3378.
    • (2012) Mol Ecol , vol.21 , pp. 3363-3378
    • Sullam, K.E.1    Essinger, S.D.2    Lozupone, C.A.3    O'connor, M.P.4    Rosen, G.L.5    Knight, R.6
  • 66
    • 34250733462 scopus 로고    scopus 로고
    • Sponge-associated microorganisms: evolution, ecology, and biotechnological potential
    • Taylor, M.W., Radax, R., Steger, D., and Wagner, M. (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71: 295–347.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 295-347
    • Taylor, M.W.1    Radax, R.2    Steger, D.3    Wagner, M.4
  • 67
    • 84872914192 scopus 로고    scopus 로고
    • Sponge-specific” bacteria are widespread (but rare) in diverse marine environments
    • Taylor, M.W., Tsai, P., Simister, R.L., Deines, P., Botte, E., Ericson, G., et al. (2013) “Sponge-specific” bacteria are widespread (but rare) in diverse marine environments. ISME J 7: 438–443.
    • (2013) ISME J , vol.7 , pp. 438-443
    • Taylor, M.W.1    Tsai, P.2    Simister, R.L.3    Deines, P.4    Botte, E.5    Ericson, G.6
  • 68
    • 77955625829 scopus 로고    scopus 로고
    • Stability of ecological communities and the architecture of mutualistic and trophic networks
    • Thébault, E., and Fontaine, C. (2010) Stability of ecological communities and the architecture of mutualistic and trophic networks. Science 329: 853–856.
    • (2010) Science , vol.329 , pp. 853-856
    • Thébault, E.1    Fontaine, C.2
  • 71
    • 84905018877 scopus 로고    scopus 로고
    • Characterizing the avian gut microbiota: membership, driving influences, and potential function
    • Waite, D.W., and Taylor, M.W. (2014) Characterizing the avian gut microbiota: membership, driving influences, and potential function. Front Microbiol 5: 223.
    • (2014) Front Microbiol , vol.5 , pp. 223
    • Waite, D.W.1    Taylor, M.W.2
  • 72
    • 84956921023 scopus 로고    scopus 로고
    • High-throughput sequencing reveals the core gut microbiome of bar-headed goose (Anser indicus) in different wintering areas in Tibet
    • Wang, W., Cao, J., Yang, F., Wang, X., Zheng, S., Sharshov, K., and Li, L. (2016) High-throughput sequencing reveals the core gut microbiome of bar-headed goose (Anser indicus) in different wintering areas in Tibet. Microbiologyopen 5: 287–295.
    • (2016) Microbiologyopen , vol.5 , pp. 287-295
    • Wang, W.1    Cao, J.2    Yang, F.3    Wang, X.4    Zheng, S.5    Sharshov, K.6    Li, L.7
  • 73
    • 34248512288 scopus 로고    scopus 로고
    • Sponge disease: A global threat?
    • Webster, N.S. (2007) Sponge disease: A global threat? Environ Microbiol 9: 1363–1375.
    • (2007) Environ Microbiol , vol.9 , pp. 1363-1375
    • Webster, N.S.1
  • 74
    • 0037013001 scopus 로고    scopus 로고
    • A spongin-boring α-proteobacterium is the etiological agent of disease in the Great Barrier Reef sponge Rhopaloeides odorabile
    • Webster, N.S., Negri, A.P., Webb, R.I., and Hill, R.T. (2002) A spongin-boring α-proteobacterium is the etiological agent of disease in the Great Barrier Reef sponge Rhopaloeides odorabile. Mar Ecol Prog Ser 232: 305–309.
    • (2002) Mar Ecol Prog Ser , vol.232 , pp. 305-309
    • Webster, N.S.1    Negri, A.P.2    Webb, R.I.3    Hill, R.T.4
  • 75
    • 77955263252 scopus 로고    scopus 로고
    • Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
    • Webster, N.S., Taylor, M.W., Behnam, F., Lücker, S., Rattei, T., Whalan, S., et al. (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ Microbiol 12: 2070–2082.
    • (2010) Environ Microbiol , vol.12 , pp. 2070-2082
    • Webster, N.S.1    Taylor, M.W.2    Behnam, F.3    Lücker, S.4    Rattei, T.5    Whalan, S.6
  • 76
    • 84965143094 scopus 로고    scopus 로고
    • The Sponge Hologenome
    • Webster, N.S., and Thomas, T. (2016) The Sponge Hologenome. MBio 7: e00135–e00116.
    • (2016) MBio , vol.7 , pp. e00116-e00135
    • Webster, N.S.1    Thomas, T.2
  • 78
    • 84931269339 scopus 로고    scopus 로고
    • Stream microbial diversity in response to environmental changes: Review and synthesis of existing research
    • Zeglin, L.H. (2015) Stream microbial diversity in response to environmental changes: Review and synthesis of existing research. Front Microbiol 6: 1–15.
    • (2015) Front Microbiol , vol.6 , pp. 1-15
    • Zeglin, L.H.1
  • 79
    • 84901056709 scopus 로고    scopus 로고
    • Mongolians core gut microbiota and its correlation with seasonal dietary changes
    • Zhang, J., Guo, Z., Lim, A.A.Q., Zheng, Y., Koh, E.Y., Ho, D., et al. (2014) Mongolians core gut microbiota and its correlation with seasonal dietary changes. Sci Rep 4: 5001.
    • (2014) Sci Rep , vol.4 , pp. 5001
    • Zhang, J.1    Guo, Z.2    Lim, A.A.Q.3    Zheng, Y.4    Koh, E.Y.5    Ho, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.