Bottomless barrel-sponge species in the Indo-Pacific?

Zootaxa

Volumn 4136, Issue 2, 2016, Pages 393-396

  Setiawan, Edwin ^a,b   De Voogd, Nicole J ^c   Hooper, John N A ^d,f   Wörheide, Gert ^a,e   Erpenbeck, Dirk ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b DEPARTMENT OF ELECTRICAL ENGINEERING   (Indonesia)

^c NATURALIS BIODIVERSITY CENTER   (Netherlands)

^d QUEENSLAND MUSEUM   (Australia)

^e BAYERISCHE STAATSSAMMLUNG FÜR PALÄONTOLOGIE UND GEOLOGIE   (Germany)

^f GRIFFITH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANATOMY AND HISTOLOGY; ANIMAL; ANIMAL STRUCTURES; BODY SIZE; CLASSIFICATION; EXON; GROWTH, DEVELOPMENT AND AGING; INDIAN OCEAN; INTRON; ORGAN SIZE; PACIFIC OCEAN; PHYLOGENY; SPONGE (PORIFERA);

ANIMAL STRUCTURES; ANIMALS; BODY SIZE; EXONS; INDIAN OCEAN; INTRONS; ORGAN SIZE; PACIFIC OCEAN; PHYLOGENY; PORIFERA;

EID: 84977574329     PISSN: 11755326     EISSN: 11755334     Source Type: Journal    
DOI: 10.11646/zootaxa.4136.2.11     Document Type: Letter

References (20)

1. Angermeier, H., Kamke, J., Abdelmohsen, U.R., Krohne, G., Pawlik, J.R., Lindquist, N.L. & Hentschel, U. (2011) The pathology of sponge orange band disease affecting the Caribbean barrel sponge Xestospongia muta. FEMS Microbiology Ecology, 75, 218-230.http://dx.doi.org/10.1111/j.1574-6941.2010.01001.x.
2. Bell, J.J., Smith, D., Hannan, D., Haris, A., Jompa, J. & Thomas, L. (2014) Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: Implications for conservation and management. PLOS ONE, 9, e91635. http://dx.doi.org/10.1371/journal.pone.0091635.
3. Bentlage, B. & Wörheide, G. (2007) Low genetic structuring among Pericharax heteroraphis (Porifera: Calcarea) populations from the Great Barrier Reef (Australia), revealed by analysis of rDNA and nuclear intron sequences. Coral Reefs, 26, 807-816.http://dx.doi.org/10.1007/s00338-007-0267-1.
4. Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolution Bioinformatics Online, 1, 47-50.
5. Flot, J.F. (2010) Seqphase: Aweb tool for interconverting phase input/output files and fasta sequence alignments. Molecular Ecology Resources, 10, 162-166.http://dx.doi.org/10.1111/j.1755-0998.2009.02732.x.
6. Jarman, S.N., Ward, R.D. & Elliott, N.G. (2002) Oligonucleotide primers for PCR amplification of coelomate introns. Marine Biotechnology, 4, 347-355.http://dx.doi.org/10.1007/s10126-002-0029-6.
7. Jones, G.P., Srinivasan, M. & Almany, G.R. (2007) Population connectivity and conservation of marine biodiversity. Oceanography, 20, 100-111.http://dx.doi.org/10.5670/oceanog.2007.33.
8. Lamarck, J.B.P.D.M., Comte De (1815) Suite des polypiers empâtés. In: Mémoires du Muséum d'Histoire naturelle, Paris, Paris, pp. 69-80, 162-168, 331-340.
9. Librado, P. & Rozas, J. (2009) DnaSP v5: Asoftware for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.http://dx.doi.org/10.1093/bioinformatics/btp187.
10. Palumbi, S.R. & Baker, C.S. (1994) Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales.Molecular Biology and Evolution, 11, 426-435.
11. Reveillaud, J., Remerie, T., van Soest, R., Erpenbeck, D., Cardenas, P., Derycke, S., Xavier, J.R., Rigaux, A. & Vanreusel, A. (2010) Species boundaries and phylogenetic relationships between Atlanto-Mediterranean shallow-water and deep-sea coral associated Hexadella species (Porifera, Ianthellidae). Molecular Phylogenetics and Evolution, 56, 104-114.http://dx.doi.org/10.1016/j.ympev.2010.03.034.
12. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539-542.http://dx.doi.org/10.1093/sysbio/sys029.
13. Rua, C.P.J., Zilberberg, C. & Sole-Cava, A.M. (2011) New polymorphic mitochondrial markers for sponge phylogeography. Journal of the Marine Biological Association of the United Kingdom, 91, 1015-1022.http://dx.doi.org/10.1017/S0025315410002122.
14. Setiawan, E., de Voogd, N.J., Swierts, T., Hooper, J.N.A., Wörheide, G. & Erpenbeck, D. (2016) MtDNA diversity of the Indonesian giant barrel sponge Xestospongia testudinaria (Porifera: Haplosclerida) - implications from partial cytochrome oxidase 1 sequences. Journal of the Marine Biological Association of the United Kingdom, 96, 323-332.http://dx.doi.org/10.1017/S0025315415001149.
15. Shearer, T.L., van Oppen, M.J.H., Romano, S.L. & Wörheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11, 2475-2487.http://dx.doi.org/10.1046/j.1365-294X.2002.01652.x.
16. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758-771.http://dx.doi.org/10.1080/10635150802429642.
17. Swierts, T., Peijnenburg, K.T.C.A., de Leeuw, C., Cleary, D.F.R., Hörnlein, C., Setiawan, E., Wörheide, G., Erpenbeck, D. & de Voogd, N.J. (2013) Lock, stock and two different barrels: comparing the genetic composition of morphotypes of the Indo-Pacific sponge Xestospongia testudinaria. PLOS ONE, 8, e74396.http://dx.doi.org/10.1371/journal.pone.0074396.
18. van Soest, R.W.M. (1989) The Indonesian sponge fauna: A status report. Netherlands Journal of Sea Research, 23, 223-230.http://dx.doi.org/10.1016/0077-7579(89)90016-1.
19. Vargas, S., Schuster, A., Sacher, K., Büttner, G., Schätzle, S., Läuchli, B., Hall, K., Hooper, J.N.A., Erpenbeck, D. & Wörheide, G. (2012) Barcoding sponges: an overview based on comprehensive sampling. PLOS ONE, 7, e39345.http://dx.doi.org/10.1371/journal.pone.0039345.
20. Zhang, D.-X. & Hewitt, G.M. (2003) Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects.Molecular Ecology, 12, 563-584.http://dx.doi.org/10.1046/j.1365-294X.2003.01773.x.