메뉴 건너뛰기




Volumn 94, Issue 12, 2013, Pages 2781-2791

Specificity and temporal dynamics of complex bacteria-sponge symbiotic interactions

Author keywords

Bacterial community dynamics; Eecological networks; Marine sponges; Microbe host interactions; Phylogenetic community structure; Specialism; Temporal dynamics

Indexed keywords

COMMUNITY STRUCTURE; EVOLUTIONARY BIOLOGY; MARINE ECOSYSTEM; MICROBIAL ACTIVITY; PERSISTENCE; PHYLOGENETICS; SPONGE; SYMBIOSIS; TEMPORAL VARIATION;

EID: 84892171409     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/13-0557.1     Document Type: Article
Times cited : (25)

References (51)
  • 1
    • 33749556463 scopus 로고    scopus 로고
    • Mediterranean coralligenous assemblages: A synthesis of present knowledge
    • Ballesteros, E. 2006. Mediterranean coralligenous assemblages: A synthesis of present knowledge. Oceanography and Marine Biology: An Annual Review 44:123-195.
    • (2006) Oceanography and Marine Biology: An Annual Review , vol.44 , pp. 123-195
    • Ballesteros, E.1
  • 2
    • 67749099944 scopus 로고    scopus 로고
    • Disentangling the web of life
    • Bascompte, J. 2009. Disentangling the web of life. Science 325: 416-419.
    • (2009) Science , vol.325 , pp. 416-419
    • Bascompte, J.1
  • 4
    • 33745425276 scopus 로고    scopus 로고
    • The network structure of food webs
    • M. Pascual and J. A. Dunne, editors Oxford University Press, Oxford, UK
    • Dunne, J. A. 2006. The network structure of food webs. Pages 27-86 in M. Pascual and J. A. Dunne, editors. Ecological networks: Linking structure to dynamics in food webs. Oxford University Press, Oxford, UK.
    • (2006) Ecological Networks: Linking Structure to Dynamics in Food Webs , pp. 27-86
    • Dunne, J.A.1
  • 5
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics Society of America 131:479-491.
    • (1992) Genetics Society of America , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 6
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61:1-10.
    • (1992) Biological Conservation , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 8
    • 66149150877 scopus 로고    scopus 로고
    • Microbial community structure and its functional implications
    • Fuhrman, J. A. 2009. Microbial community structure and its functional implications. Nature 459:193-199.
    • (2009) Nature , vol.459 , pp. 193-199
    • Fuhrman, J.A.1
  • 9
    • 0031849624 scopus 로고    scopus 로고
    • Benthic suspension feeders: Their paramount role in littoral marine food webs
    • Gili, J. M., and R. Coma. 1998. Benthic suspension feeders: Their paramount role in littoral marine food webs. Trends in Ecology and Evolution 13:316-321.
    • (1998) Trends in Ecology and Evolution , vol.13 , pp. 316-321
    • Gili, J.M.1    Coma, R.2
  • 12
    • 57549112232 scopus 로고    scopus 로고
    • Review: Ecological networks - Beyond food webs
    • Ings, T. C., et al. 2009. Review: Ecological networks - beyond food webs. Journal of Animal Ecology 78:253-269.
    • (2009) Journal of Animal Ecology , vol.78 , pp. 253-269
    • Ings, T.C.1
  • 14
    • 70349414422 scopus 로고    scopus 로고
    • Evidence for vertical transmission of bacterial symbionts from adult to embryo in the Caribbean sponge Svenzea zeai
    • Lee, O. O., P. Y. Chui, Y. H. Wong, J. R. Pawlik, and P.-Y. Qian. 2009. Evidence for vertical transmission of bacterial symbionts from adult to embryo in the Caribbean sponge Svenzea zeai. Applied and Environmental Microbiology 75: 6147-6156.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 6147-6156
    • Lee, O.O.1    Chui, P.Y.2    Wong, Y.H.3    Pawlik, J.R.4    Qian, P.-Y.5
  • 15
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C., and R. Knight. 2005. UniFrac: A new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 71:8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 16
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig, W. 2004. ARB: A software environment for sequence data. Nucleic Acids Research 32:1363-1371.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 18
    • 84859601857 scopus 로고    scopus 로고
    • Princeton University Press, Princeton, New Jersey, USA
    • McCann, K. S. 2012. Food webs. Princeton University Press, Princeton, New Jersey, USA.
    • (2012) Food Webs
    • McCann, K.S.1
  • 19
    • 52049102283 scopus 로고    scopus 로고
    • Are biologists in ''future shock'' Symbiosis integrates biology across domains
    • McFall-Ngai, M. 2008. Are biologists in ''future shock'' Symbiosis integrates biology across domains. Nature 6:789- 792.
    • (2008) Nature , vol.6 , pp. 789-792
    • McFall-Ngai, M.1
  • 20
    • 46949090173 scopus 로고    scopus 로고
    • Monitoring bacterial diversity of the marine sponge Ircinia strobilina upon transfer into aquaculture
    • Mohamed, N. M., V. Rao, M. T. Hamann, M. Kelly, and R. T. Hill. 2008. Monitoring bacterial diversity of the marine sponge Ircinia strobilina upon transfer into aquaculture. Applied and Environmental Microbiology 74:4133-4143.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 4133-4143
    • Mohamed, N.M.1    Rao, V.2    Hamann, M.T.3    Kelly, M.4    Hill, R.T.5
  • 21
    • 33746327503 scopus 로고    scopus 로고
    • Ecological networks and their fragility
    • Montoya, J. M., S. L. Pimm, and R. V. Solé . 2006. Ecological networks and their fragility. Nature 442:259-264.
    • (2006) Nature , vol.442 , pp. 259-264
    • Montoya, J.M.1    Pimm, S.L.2    Solé, R.V.3
  • 22
    • 69449086181 scopus 로고    scopus 로고
    • Press perturbations and indirect effects in real food webs
    • Montoya, J. M., G. Woodward, M. C. Emmerson, and R. V. Solé . 2009. Press perturbations and indirect effects in real food webs. Ecology 90:2426-2433.
    • (2009) Ecology , vol.90 , pp. 2426-2433
    • Montoya, J.M.1    Woodward, G.2    Emmerson, M.C.3    Solé, R.V.4
  • 23
    • 39449118068 scopus 로고    scopus 로고
    • Learning how to live together: Genomic insights into prokaryote- animal symbioses
    • Moya, A., J. Peretó, R. Gil, and A. Latorre. 2008. Learning how to live together: Genomic insights into prokaryote- animal symbioses. Nature Reviews Genetics 9:218-229.
    • (2008) Nature Reviews Genetics , vol.9 , pp. 218-229
    • Moya, A.1    Peretó, J.2    Gil, R.3    Latorre, A.4
  • 25
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59:695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 26
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer, G., and K. Smalla. 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 71:127-141.
    • (1998) Antonie Van Leeuwenhoek , vol.71 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 27
    • 84873734899 scopus 로고    scopus 로고
    • Analysis of artifacts suggest DGGE should not be used for quantitative diversity analysis
    • Neilson, J. W., F. L. Jordan, and R. M. Maier. 2013. Analysis of artifacts suggest DGGE should not be used for quantitative diversity analysis. Journal of Microbiological Methods 92:256-263.
    • (2013) Journal of Microbiological Methods , vol.92 , pp. 256-263
    • Neilson, J.W.1    Jordan, F.L.2    Maier, R.M.3
  • 29
  • 30
    • 74149093709 scopus 로고    scopus 로고
    • Realized fungal diversity increases functional stability of leaf decomposition under zinc stress
    • Pascoal, C., F. Cá ssio, L. Nikolcheva, and F. Ba rlocher. 2010. Realized fungal diversity increases functional stability of leaf decomposition under zinc stress. Microbial Ecology 59:84- 93.
    • (2010) Microbial Ecology , vol.59 , pp. 84-93
    • Pascoal, C.1    Cássio, F.2    Nikolcheva, L.3    Ba Rlocher, F.4
  • 31
    • 33744745905 scopus 로고    scopus 로고
    • Marine microbial diversity: Can it be determined
    • Pedró s-Alió, C. 2006. Marine microbial diversity: Can it be determined Trends in Microbiology 14:257-263.
    • (2006) Trends in Microbiology , vol.14 , pp. 257-263
    • Pedrós-Alió, C.1
  • 32
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., C. Quast, K. Knittel, B. M. Fuchs, W. Ludwig, J. Peplies, and F. O. Glockner. 2007. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35:7188-7196.
    • (2007) Nucleic Acids Research , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 35
    • 33749824905 scopus 로고    scopus 로고
    • Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors
    • Ruan, Q., D. Dutta, M. S. Schwalbach, J. A. Steele, J. A. Fuhrman, and F. Sun. 2006. Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics 22:2532-2538.
    • (2006) Bioinformatics , vol.22 , pp. 2532-2538
    • Ruan, Q.1    Dutta, D.2    Schwalbach, M.S.3    Steele, J.A.4    Fuhrman, J.A.5    Sun, F.6
  • 36
    • 52049108070 scopus 로고    scopus 로고
    • Symbiotic conversations are revealed under genetic interrogation
    • Ruby, E. G. 2008. Symbiotic conversations are revealed under genetic interrogation. Nature Reviews Microbiology 6:752- 762.
    • (2008) Nature Reviews Microbiology , vol.6 , pp. 752-762
    • Ruby, E.G.1
  • 37
    • 0037435042 scopus 로고    scopus 로고
    • Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system
    • Schauer, M., V. Balagué, C. Pedró s-Alió, and R. Massana. 2003. Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system. Aquatic Microbial Ecology 31:163-174.
    • (2003) Aquatic Microbial Ecology , vol.31 , pp. 163-174
    • Schauer, M.1    Balagué, V.2    Pedrós-Alió, C.3    Massana, R.4
  • 39
    • 40249113895 scopus 로고    scopus 로고
    • Evaluating different approaches that test whether microbial communities have the same structure
    • Schloss, P. D. 2008. Evaluating different approaches that test whether microbial communities have the same structure. ISME Journal 2:265-275.
    • (2008) ISME Journal , vol.2 , pp. 265-275
    • Schloss, P.D.1
  • 40
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D., et al. 2009. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75:7537-7541.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 41
    • 57449117293 scopus 로고    scopus 로고
    • Molecular microbial diversity survey of sponge reproductive stages and mechanistic insights into vertical transmission of microbial symbionts
    • Schmitt, S., H. Angermeier, R. Schiller, N. Lindquist, and U. Hentschel. 2008. Molecular microbial diversity survey of sponge reproductive stages and mechanistic insights into vertical transmission of microbial symbionts. Applied and Environmental Microbiology 74:7694-7708.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 7694-7708
    • Schmitt, S.1    Angermeier, H.2    Schiller, R.3    Lindquist, N.4    Hentschel, U.5
  • 42
    • 84856569941 scopus 로고    scopus 로고
    • Sponge-specific clusters revisited: A comprehensive phylogeny of sponge-associated microorganisms
    • Simister, R. L., P. Deines, E. S. Botté, N. S. Webster, and M. W. Taylor. 2012. Sponge-specific clusters revisited: A comprehensive phylogeny of sponge-associated microorganisms. Environmental Microbiology 14:517-524.
    • (2012) Environmental Microbiology , vol.14 , pp. 517-524
    • Simister, R.L.1    Deines, P.2    Botté, E.S.3    Webster, N.S.4    Taylor, M.W.5
  • 43
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 45
    • 0038454745 scopus 로고    scopus 로고
    • Host specificity of the symbiotic cyanobacterium Oscillatoria spongeliae in marine sponges, Dysidea spp
    • Thacker, R. W., and S. Starnes. 2003. Host specificity of the symbiotic cyanobacterium Oscillatoria spongeliae in marine sponges, Dysidea spp. Marine Biology 142:643-648.
    • (2003) Marine Biology , vol.142 , pp. 643-648
    • Thacker, R.W.1    Starnes, S.2
  • 47
  • 49
    • 84856583756 scopus 로고    scopus 로고
    • Marine sponges and their microbial symbionts: Love and other relationships
    • Webster, N. S., and M. W. Taylor. 2012. Marine sponges and their microbial symbionts: Love and other relationships. Environmental Microbiology 14:335-346.
    • (2012) Environmental Microbiology , vol.14 , pp. 335-346
    • Webster, N.S.1    Taylor, M.W.2
  • 51
    • 39249083059 scopus 로고    scopus 로고
    • Do associated microbial abundances impact marine demosponge pumping rates and tissue densities
    • Weisz, J. B., N. Lindquist, and C. S. Martens. 2008. Do associated microbial abundances impact marine demosponge pumping rates and tissue densities Oecologia 155:367-376.
    • (2008) Oecologia , vol.155 , pp. 367-376
    • Weisz, J.B.1    Lindquist, N.2    Martens, C.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.